BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141110.1 + phase: 0 /pseudo
(143 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ACCA_SYNY3 (P74638) Acetyl-coenzyme A carboxylase carboxyl trans... 36 0.032
HEM1_STRAW (Q82E77) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR) 33 0.16
HEM1_STRCO (Q9WX15) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR) 33 0.27
RNH2_STRA5 (Q8DZT5) Ribonuclease HII (EC 3.1.26.4) (RNase HII) 30 1.3
RNH2_STRA3 (Q8E5I2) Ribonuclease HII (EC 3.1.26.4) (RNase HII) 30 1.3
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 30 1.3
ALF1_FUSNN (Q8RGH3) Fructose-bisphosphate aldolase class I (EC 4... 29 3.0
ABI3_ARATH (Q01593) Abscisic acid-insensitive protein 3 29 3.0
CDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor (PCDH-gamm... 29 3.9
TOP1_SCHPO (P07799) DNA topoisomerase I (EC 5.99.1.2) 28 6.7
THIE_STRCO (Q9S2V2) Probable thiamine-phosphate pyrophosphorylas... 28 6.7
MLEY_HUMAN (P14649) Myosin light chain 1, slow-twitch muscle A i... 28 6.7
YYDC_BACSU (Q45599) Hypothetical protein yydC 28 8.7
>ACCA_SYNY3 (P74638) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha (EC 6.4.1.2)
Length = 326
Score = 35.8 bits (81), Expect = 0.032
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 31 MRIVLTHEKKLYVLDGPIPE------APPAGASAALRNAHAKHLNDSVEVSCIMLASMTP 84
++I KL ++DG IPE A P GA+A L+ A HLN LA +TP
Sbjct: 253 LKITADDLAKLQIIDGIIPEPKGAAHANPLGAAAKLKEALLFHLN--------TLAQLTP 304
Query: 85 ELQKQHEGMTAFDMIEHLKTLYE 107
+ +KQ +D HL E
Sbjct: 305 QERKQ----LRYDKFRHLGQFLE 323
>HEM1_STRAW (Q82E77) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR)
Length = 569
Score = 33.5 bits (75), Expect = 0.16
Identities = 28/102 (27%), Positives = 48/102 (46%), Gaps = 2/102 (1%)
Query: 32 RIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLNDSVEVSCIMLASMTPELQKQHE 91
R LT + ++ +L + A PA +A L + L V+ +A ++ L QH
Sbjct: 20 RATLTADAQVKLLQDTVA-AEPATEAAVLATCNRIELYADVDKFHAGVAELST-LLAQHS 77
Query: 92 GMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPVG 133
G+ ++ +L YE++A H F V+ L S + EG +G
Sbjct: 78 GVGLEELTPYLYVHYEDRAVHHLFSVACGLDSMVVGEGQILG 119
>HEM1_STRCO (Q9WX15) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR)
Length = 581
Score = 32.7 bits (73), Expect = 0.27
Identities = 28/102 (27%), Positives = 47/102 (45%), Gaps = 2/102 (1%)
Query: 32 RIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLNDSVEVSCIMLASMTPELQKQHE 91
R L + +L +L + A PA +A L + L V+ +A ++ L QH
Sbjct: 20 RASLNADAQLKLLQDTVA-AEPAAEAAVLATCNRIELYADVDKFHAGVAELST-LLAQHS 77
Query: 92 GMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPVG 133
G+ ++ +L YE++A H F V+ L S + EG +G
Sbjct: 78 GVGLEELTPYLYVHYEDRAVHHLFSVACGLDSMVVGEGQILG 119
>RNH2_STRA5 (Q8DZT5) Ribonuclease HII (EC 3.1.26.4) (RNase HII)
Length = 253
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/83 (26%), Positives = 45/83 (53%), Gaps = 13/83 (15%)
Query: 4 NASTNILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYV--------LD--GPIPEAPP 53
++ + +++++++K +++ +D + +L +EKKLY+ +D G P A P
Sbjct: 28 DSRAGVQKAILQRKKNIQSD-LDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGP 86
Query: 54 AGASAALR--NAHAKHLNDSVEV 74
A+A + N KHLNDS ++
Sbjct: 87 VVAAAVILPPNCKIKHLNDSKKI 109
>RNH2_STRA3 (Q8E5I2) Ribonuclease HII (EC 3.1.26.4) (RNase HII)
Length = 253
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/83 (26%), Positives = 45/83 (53%), Gaps = 13/83 (15%)
Query: 4 NASTNILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYV--------LD--GPIPEAPP 53
++ + +++++++K +++ +D + +L +EKKLY+ +D G P A P
Sbjct: 28 DSRAGVQKAILQRKKNIQSD-LDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGP 86
Query: 54 AGASAALR--NAHAKHLNDSVEV 74
A+A + N KHLNDS ++
Sbjct: 87 VVAAAVILPPNCKIKHLNDSKKI 109
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/104 (25%), Positives = 45/104 (42%), Gaps = 16/104 (15%)
Query: 27 WSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHA---KHLNDSVEVSCIMLASMT 83
W +R +L + L V+DG +P A R A + ++L+DS
Sbjct: 19 WKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSF----------- 67
Query: 84 PELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLS 127
L +TA ++E+L +YE ++ + + K L S KLS
Sbjct: 68 --LNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLS 109
>ALF1_FUSNN (Q8RGH3) Fructose-bisphosphate aldolase class I (EC
4.1.2.13) (FBP aldolase)
Length = 295
Score = 29.3 bits (64), Expect = 3.0
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 6/76 (7%)
Query: 60 LRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSK 119
LR+ KHLN E S +ML P ++ +E T + + L +R + D+
Sbjct: 193 LRDEIRKHLNALPETSNVMLKLTLPTVENLYEEFTKHPRVVRVVALSGGYSREKANDILS 252
Query: 120 ------ALFSTKLSEG 129
A FS L+EG
Sbjct: 253 KNKGVIASFSRALTEG 268
>ABI3_ARATH (Q01593) Abscisic acid-insensitive protein 3
Length = 720
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 46 GPIPEAPPAGASAALRNAHAKHLNDSVEVSCIMLASMTPELQK 88
G PEAPP+ A+ +N +++N++ + +++AS T + K
Sbjct: 678 GQKPEAPPSSAATKRQNKSQRNINNNSPSANVVVASPTSQTVK 720
>CDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor
(PCDH-gamma-A10)
Length = 936
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/45 (33%), Positives = 23/45 (50%)
Query: 44 LDGPIPEAPPAGASAALRNAHAKHLNDSVEVSCIMLASMTPELQK 88
L P+ E P G AL N H + +V+C +LA + +L+K
Sbjct: 356 LFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEK 400
>TOP1_SCHPO (P07799) DNA topoisomerase I (EC 5.99.1.2)
Length = 814
Score = 28.1 bits (61), Expect = 6.7
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 79 LASMTPELQKQHEGMTAFDMIEHLKTLYE 107
LA PEL + EG+T +++H +TLYE
Sbjct: 645 LAKSKPELLAKEEGITDSWIVKHHETLYE 673
>THIE_STRCO (Q9S2V2) Probable thiamine-phosphate pyrophosphorylase
(EC 2.5.1.3) (TMP pyrophosphorylase) (TMP-PPase)
(Thiamine-phosphate synthase)
Length = 223
Score = 28.1 bits (61), Expect = 6.7
Identities = 24/87 (27%), Positives = 37/87 (41%), Gaps = 14/87 (16%)
Query: 48 IPEAPPAGASAALRNAHA-------KHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIE 100
+P+ P A A L +A + D E +LA +Q + +GM A + +E
Sbjct: 1 MPDTAPTAARARLADARLYLCTDARRSQGDLPEFLDAVLAGGVDIVQLRDKGMEAAEELE 60
Query: 101 HLKTLYEEQARH-------ERFDVSKA 120
HL + ARH +R DV+ A
Sbjct: 61 HLAVFADACARHGKLLAVNDRADVAHA 87
>MLEY_HUMAN (P14649) Myosin light chain 1, slow-twitch muscle A
isoform (MLC1sa) (Alkali)
Length = 208
Score = 28.1 bits (61), Expect = 6.7
Identities = 26/93 (27%), Positives = 40/93 (42%), Gaps = 13/93 (13%)
Query: 51 APPAGASA--ALRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEE 108
APPA A A+ A K V++S +++ +L++ E FD + K LY +
Sbjct: 29 APPAKTKAEPAVPQAPQKTQEPPVDLSKVVIEFNKDQLEEFKEAFELFDRVGDGKILYSQ 88
Query: 109 QARHERFDVSKALFSTKLSEGGPVGPHVLKMIG 141
DV +AL P VLK++G
Sbjct: 89 CG-----DVMRALGQ------NPTNAEVLKVLG 110
>YYDC_BACSU (Q45599) Hypothetical protein yydC
Length = 132
Score = 27.7 bits (60), Expect = 8.7
Identities = 15/40 (37%), Positives = 26/40 (64%), Gaps = 2/40 (5%)
Query: 6 STNILRSLIEKEKLTETNFIDWSRNMRIV--LTHEKKLYV 43
S+ IL L+EKEK + F+D++++ I+ L E+ LY+
Sbjct: 70 SSKILYELLEKEKHIDQLFLDYAKSQGIIINLNIERILYL 109
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,369,868
Number of Sequences: 164201
Number of extensions: 601205
Number of successful extensions: 1643
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 13
length of query: 143
length of database: 59,974,054
effective HSP length: 99
effective length of query: 44
effective length of database: 43,718,155
effective search space: 1923598820
effective search space used: 1923598820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC141110.1