BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141107.11 + phase: 0 /pseudo
(650 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABF1_STRCX (P82593) Alpha-N-arabinofuranosidase I precursor (EC ... 275 4e-73
ABFA_ASPNG (P42254) Alpha-N-arabinofuranosidase A precursor (EC ... 214 7e-55
ABFA_BACHD (Q9KBR4) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (A... 74 1e-12
ABF2_BACOV (Q59219) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) ... 74 2e-12
ABFA_STRLI (P53627) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (A... 72 5e-12
ABFA_BACST (Q9XBQ3) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (A... 70 2e-11
ABFA_BACSU (P94531) Alpha-N-arabinofuranosidase 1 (EC 3.2.1.55) ... 64 1e-09
ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) ... 58 7e-08
KDSB_RICCN (Q92I96) 3-deoxy-manno-octulosonate cytidylyltransfer... 34 1.0
MURE_STRP8 (Q8P2B4) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 32 6.8
SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.... 31 8.9
SYGB_HELPJ (Q9ZKM9) Glycyl-tRNA synthetase beta chain (EC 6.1.1.... 31 8.9
MURE_STRP3 (Q8K8H6) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 31 8.9
>ABF1_STRCX (P82593) Alpha-N-arabinofuranosidase I precursor (EC
3.2.1.55) (Arabinosidase I) (Alpha-N-AFase I)
Length = 825
Score = 275 bits (702), Expect = 4e-73
Identities = 184/568 (32%), Positives = 288/568 (50%), Gaps = 62/568 (10%)
Query: 39 AAQGRPMPNTLFGIFYEEINHAGSGGIWAQLVNNSGFEAA--GTRTPSNIFPWTIIGTES 96
AA+G + +T++G+F+E+IN A GG++A+LV N FE + R+ + + W + GT
Sbjct: 42 AAKGAAIDDTMYGVFFEDINRAADGGLYAELVQNRSFEYSTDDNRSYTPLTSWIVDGTGE 101
Query: 97 SVKLQTELSSCFERNKVALRMDVLCDKCPPDGVGVSNPGF-WGMNIVQGKKYKVVFFYRS 155
V L+ ERN+ L + G V+N G+ G+ + QGK+Y + R+
Sbjct: 102 VVNDAGRLN---ERNRNYLSLGA--------GSSVTNAGYNTGIRVEQGKRYDFSVWARA 150
Query: 156 LGSLDMRVAFRDAISGRILASSHIIRHKASKKKGSKWQRVQTILEARASSSNSNLTLTTT 215
+ + VA +DA LA++ + + W + + A +S+ L +
Sbjct: 151 GSASTLTVALKDAAG--TLATARQVAVEGG------WAKYRATFTATRTSNRGRLAVAAN 202
Query: 216 KEGTVWLDQVSAMPTDTFKG--HGFRKDLVEMLIQLKPAFLRFPGGCFVE---------- 263
LD VS P DT++ +G RKDL E + L P F+RFPGGC V
Sbjct: 203 DAAA--LDMVSLFPRDTYRNQQNGLRKDLAEKIAALHPGFVRFPGGCLVNTGSMEDYSAA 260
Query: 264 -GVQLRNAFRWKDSVGPWEQRPGHLNDIWNYWTDDGLGFFEGLQLAEDIGALPIWVFN-- 320
G Q + +++WKD+VGP E+R + N W Y GLG++E + +EDIGA+P+ V
Sbjct: 261 SGWQRKRSYQWKDTVGPVEERATNAN-FWGYNQSYGLGYYEYFRFSEDIGAMPLPVVPAL 319
Query: 321 -NGISHSDEVDT-SVISPFVKEALEGIEFARGSSTSKWGSVRASMGHPKPFNLKYVAIGN 378
G + VD +++ +++ L+ IEFA G +TSKWG VRA MGHP+PF L ++ +GN
Sbjct: 320 VTGCGQNKAVDDEALLKRHIQDTLDLIEFANGPATSKWGKVRAEMGHPRPFRLTHLEVGN 379
Query: 379 EDCYKKNYYGNYMAFYKAIKKFYPDIQIISNC----------PAFKTPLNHPADLYDYHT 428
E+ ++ + F AI+ YPDI ++SN A+K ++ D H
Sbjct: 380 EENLPDEFFDRFKQFRAAIEAEYPDITVVSNSGPDDAGTTFDTAWKLNREANVEMVDEHY 439
Query: 429 YPIDARAMFNAYHD-FDKSPRNGPKAFVSEYALIGALQAKYGTLLGAVSEAGFLIGLERN 487
Y ++ F +D +D R GPK F+ EYA G +SEA F+ GLERN
Sbjct: 440 Y--NSPNWFLQNNDRYDSYDRGGPKVFLGEYASQG------NAWKNGLSEAAFMTGLERN 491
Query: 488 SDHVAMASYAPLLVNANDRNWNPDAIVFNSYQAYGTPSYWVTYMFKESNGATFLNSQ-LQ 546
+D V +ASYAPLL N + W PD + FN+ ++ + +Y V +F + G + S+
Sbjct: 492 ADVVKLASYAPLLANEDYVQWRPDLVWFNNRASWNSANYEVQKLFMNNVGDRVVPSKATT 551
Query: 547 TPDPGSLIASAILCQSPQNNSTYLKIKI 574
TPD I A+ + + Y +K+
Sbjct: 552 TPDVSGPITGAVGLSTWATGTAYDDVKV 579
>ABFA_ASPNG (P42254) Alpha-N-arabinofuranosidase A precursor (EC
3.2.1.55) (Arabinosidase A) (ABF A)
Length = 628
Score = 214 bits (544), Expect = 7e-55
Identities = 181/641 (28%), Positives = 297/641 (46%), Gaps = 56/641 (8%)
Query: 26 NANGSQISSLVVNAAQGRPMPNTLFGIFYEEINHAGSGGIWAQLVNNSGFEAAGTRTPSN 85
NA+G SL V+ G L+G +E+INH+G GGI+ Q++ N G + T N
Sbjct: 22 NAHGI---SLKVSTQGGNSSSPILYGFMFEDINHSGDGGIYGQMLQNPGLQG----TAPN 74
Query: 86 IFPWTIIGTES-SVKLQTELSSCFERNKVALRMDVLCDKCPPDGVGVSNPGFWGMNIVQG 144
+ W +G + ++ + L+S +++++ D VG++N G+WG+ V G
Sbjct: 75 LTAWAAVGDATIAIDGDSPLTSAIPST---IKLNIADDAT--GAVGLTNEGYWGIP-VDG 128
Query: 145 KKYKVVFFYRSLGSLDMRVAFRDAISGRILASSHIIRHKASKKKGSKWQRVQTILEARAS 204
++ F+ + S D+ V +G S+ I + + T
Sbjct: 129 SEFHSSFWIKGDYSGDITVRLVGNYTGTEYGSTTITHTSTADNFTQASVKFPT-----TK 183
Query: 205 SSNSNLTLTTTKEGTVWLDQ-----VSAMPTDTFKG--HGFRKDLVEMLIQLKPAFLRFP 257
+ + N+ T +G+V + +T+K +G + L +L +K +FLRFP
Sbjct: 184 APDGNVLYELTVDGSVAAGSSLNFGYLTLFGETYKSRENGLKPQLANVLDDMKGSFLRFP 243
Query: 258 GGCFVEGVQLRNAFRWKDSVGPWEQRPGHLNDIWNYWTDDGLGFFEGLQLAEDIGALPIW 317
GG +EG N ++W +++G RPG W Y+ DGLG E ED+G +P+
Sbjct: 244 GGNNLEGNSAENRWKWNETIGDLCDRPGR-EGTWTYYNTDGLGLHEYFYWCEDLGLVPVL 302
Query: 318 VFNNGISHSDEVDTSV----ISPFVKEALEGIEFARGSSTSKWGSVRASMGHPKPFNLKY 373
+G + +T + ++P++ + L +E+ G +++ +G+ RA+ G +P+NL
Sbjct: 303 GVWDGFALESGGNTPLTGDALTPYIDDVLNELEYILGDTSTTYGAWRAANGQEEPWNLTM 362
Query: 374 VAIGNEDCYK---KNYYGNYMAFYKAIKKFYPDIQII-SNCPAFKTPLNHPADLY-DYHT 428
V IGNED ++Y + AFY AI YPD+ +I S A P + P + DYH
Sbjct: 363 VEIGNEDMLGGGCESYAERFTAFYDAIHAAYPDLILIASTSEADCLPESMPEGSWVDYHD 422
Query: 429 YPIDARAMFNAYHDFDKSPRNGPKAFVSEYALIGALQAKYGTLLGAVSEAGFLIGLERNS 488
Y + ++ FD R+ P F+ EY+ + + + G+V+EA F+IG ERNS
Sbjct: 423 YSTPD-GLVGQFNYFDNLNRSVPY-FIGEYS---RWEIDWPNMKGSVAEAVFMIGFERNS 477
Query: 489 DHVAMASYAPLLVNANDRNWNPDAIVFNSY--QAYGTPSYWVTYMFKESNGATFLNSQLQ 546
D V MA+YAPLL N W PD I + + + SY+V MF + G T +
Sbjct: 478 DVVKMAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDT-IKEVTS 536
Query: 547 TPDPGSLIASAILCQSPQNNSTYLKIKIANIGSIPVNLKISLQGYVSKNLAGSTKTVLTS 606
D G L A S +S Y +K+AN GS +L +S+ G + L TVL
Sbjct: 537 DSDFGPLYWVA----SSAGDSYY--VKLANYGSETQDLTVSIPGTSTGKL-----TVLAD 585
Query: 607 GNILDENTFAAPKKIAPQTSPLQNPGNEMNVMIPPVSLTVL 647
+ D + P S +Q +P ++ VL
Sbjct: 586 SD-PDAYNSDTQTLVTPSESTVQASNGTFTFSLPAWAVAVL 625
>ABFA_BACHD (Q9KBR4) Alpha-N-arabinofuranosidase (EC 3.2.1.55)
(Arabinosidase)
Length = 500
Score = 73.9 bits (180), Expect = 1e-12
Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 237 GFRKDLVEMLIQLKPAFLRFPGGCFVEGVQLRNAFRWKDSVGPWEQRPGHLNDIWNYWTD 296
GFRKD++ ++ +L+ +R+PGG FV G + W+D VGP +RP L+ W
Sbjct: 50 GFRKDVIRLVQELQVPLVRYPGGNFVSG------YNWEDGVGPVSERPKRLDLAWRTTET 103
Query: 297 DGLGFFEGLQLAEDIGALPIWVFNNGISHSDEVDTSVISPFVKEALEGIEFARGSSTSKW 356
+ +G E + A+ +GA N G S V A +E+ S S W
Sbjct: 104 NEIGTNEFVDWAKKVGAEVNMAVNLG------------SRGVDAARNLVEYCNHPSGSYW 151
Query: 357 GSVRASMGHPKPFNLKYVAIGNE-------DCYKKNYYGNYMA-FYKAIKKFYPDIQII- 407
+R S G+ P N+K +GNE YG A K +K P I+++
Sbjct: 152 SDLRISHGYKDPHNIKTWCLGNEMDGPWQIGQKTAEEYGRVAAEAGKVMKLVDPSIELVA 211
Query: 408 -----SNCPAF----KTPLNHPADLYDY---HTY 429
S F T L+H D DY HTY
Sbjct: 212 CGSSNSKMATFADWEATVLDHTYDYVDYISLHTY 245
>ABF2_BACOV (Q59219) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
(Arabinosidase 2)
Length = 514
Score = 73.6 bits (179), Expect = 2e-12
Identities = 53/190 (27%), Positives = 80/190 (41%), Gaps = 28/190 (14%)
Query: 218 GTVWLDQVSAMPTDTFKGHGFRKDLVEMLIQLKPAFLRFPGGCFVEGVQLRNAFRWKDSV 277
G +W+ + S +P G+R D+ L L LR+PGGCF + + W D +
Sbjct: 55 GGLWVGENSDIPNIK----GYRTDVFNALKDLSVPVLRWPGGCFAD------EYHWMDGI 104
Query: 278 GPWEQRPGHLNDIWNYWTDDG-LGFFEGLQLAEDIGALPIWVFNNGISHSDEVDTSVISP 336
GP E RP +N+ W +D G E L L E +G P V +V S
Sbjct: 105 GPKENRPKMVNNNWGGTIEDNSFGTHEFLNLCEMLGCEPY------------VSGNVGSG 152
Query: 337 FVKEALEGIEFARGSSTSKWGSVRASMGHPKPFNLKYVAIGNED-----CYKKNYYGNYM 391
V+E + +E+ S ++R G K + LKY+ +GNE + YY +
Sbjct: 153 TVEELAKWVEYMTSDGDSPMANLRRKNGRDKAWKLKYLGVGNESWGCGGSMRPEYYADLY 212
Query: 392 AFYKAIKKFY 401
Y + Y
Sbjct: 213 RRYSTYCRNY 222
Score = 35.0 bits (79), Expect = 0.62
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 523 TPSYWVTYMFKESNGATFLNSQLQTPDPG---SLIASAILCQSPQNNSTYLKIKIANIGS 579
TP+Y+V M+K AT+L L + + + +N + I ++N+ +
Sbjct: 385 TPTYYVFKMYKVHQDATYLPIDLTCEKMSVRDNRTVPMVSATASKNKDGVIHISLSNVDA 444
Query: 580 IPV-NLKISLQGYVSKNLAGSTKTVLTSGNILDENTFAAPK--KIAPQTSPLQNPGNEMN 636
+ I+L +K G +LT+ + D N+F P K AP N G M
Sbjct: 445 DEAQEITINLGDTKAKKAIGE---ILTASKLTDYNSFEKPNIVKPAPFKEVKINKGT-MK 500
Query: 637 VMIPPVSLTVLDM 649
V +P S+ L++
Sbjct: 501 VKLPAKSIVTLEL 513
Score = 31.2 bits (69), Expect = 8.9
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 15 LIIVSFVAFQCNANGSQISSLVVNAAQGRPM-PNTLFGIFYEEINHAGSGGIW 66
L+ +F+A + + + +++ V+A QG+ + P ++G F E + GG+W
Sbjct: 6 LVSTAFLAASVSLSAQKSATITVHADQGKEIIPKEIYGQFAEHLGSCIYGGLW 58
>ABFA_STRLI (P53627) Alpha-N-arabinofuranosidase (EC 3.2.1.55)
(Arabinosidase) (ABF) (Alpha-L-AF)
Length = 662
Score = 72.0 bits (175), Expect = 5e-12
Identities = 74/291 (25%), Positives = 120/291 (40%), Gaps = 51/291 (17%)
Query: 232 TFKGHGFRKDLVEMLIQLKPAFLRFPGGCFVEGVQLRNAFRWKDSVGPWEQRPGHLNDIW 291
T G R+D++E++ +L +R+PGG FV G ++W+DSVGP E RP L+ W
Sbjct: 44 TADAEGLRQDVLELVRELGVTAVRYPGGNFVSG------YKWEDSVGPVEDRPRRLDLAW 97
Query: 292 NYWTDDGLGFFEGLQLAEDIG--ALPIWVFNNGISHSDEVDTSVISPFVKEALEGIEFAR 349
+ G E + + IG A P+ N G + V EALE E+A
Sbjct: 98 RSTETNRFGLSEYIAFLKKIGPQAEPMMAVNLG------------TRGVAEALELQEYAN 145
Query: 350 GSSTSKWGSVRASMGHPKPFNLKYVAIGNE-------DCYKKNYYGNYMA-FYKAIKKFY 401
S + +RA G PF ++ +GNE YG A +A+++
Sbjct: 146 HPSGTALSDLRAEHGDKDPFGIRLWCLGNEMDGPWQTGHKTAEEYGRVAAETARAMRQID 205
Query: 402 PDIQII---SNCPAFKTPLNHPADLYDYHTYPIDARAMFNAYHDFDKSPRNGPKAFVSEY 458
PD++++ S+ + +T A + TY + +AY++ P +G V +
Sbjct: 206 PDVELVACGSSGQSMETFAEWEATVLK-ETYDLVDHISLHAYYE----PHDGD---VDSF 257
Query: 459 ALIGALQAKYGTLLGAVSEAGFLIGLERNSDHVAMASYAPLLVNANDRNWN 509
L AV F+ + DHV + +N + WN
Sbjct: 258 ------------LASAVDMESFIENVVATCDHVGARLKSKKKINLSFDEWN 296
>ABFA_BACST (Q9XBQ3) Alpha-N-arabinofuranosidase (EC 3.2.1.55)
(Arabinosidase)
Length = 501
Score = 69.7 bits (169), Expect = 2e-11
Identities = 43/144 (29%), Positives = 70/144 (47%), Gaps = 18/144 (12%)
Query: 236 HGFRKDLVEMLIQLKPAFLRFPGGCFVEGVQLRNAFRWKDSVGPWEQRPGHLNDIWNYWT 295
+GFR+D++E++ +L+ +R+PGG FV G + W+D VGP EQRP L+ W
Sbjct: 49 NGFRQDVIELVKELQVPIIRYPGGNFVSG------YNWEDGVGPKEQRPRRLDLAWKSVE 102
Query: 296 DDGLGFFEGLQLAEDIGALPIWVFNNGISHSDEVDTSVISPFVKEALEGIEFARGSSTSK 355
+ +G E + A+ +GA N G D A +E+ S S
Sbjct: 103 TNEIGLNEFMDWAKMVGAEVNMAVNLGTRGID------------AARNLVEYCNHPSGSY 150
Query: 356 WGSVRASMGHPKPFNLKYVAIGNE 379
+ +R + G+ +P +K +GNE
Sbjct: 151 YSDLRIAHGYKEPHKIKTWCLGNE 174
>ABFA_BACSU (P94531) Alpha-N-arabinofuranosidase 1 (EC 3.2.1.55)
(Arabinosidase 1)
Length = 500
Score = 63.9 bits (154), Expect = 1e-09
Identities = 40/143 (27%), Positives = 63/143 (43%), Gaps = 18/143 (12%)
Query: 237 GFRKDLVEMLIQLKPAFLRFPGGCFVEGVQLRNAFRWKDSVGPWEQRPGHLNDIWNYWTD 296
GFRKD+ ++ +L+ +R+PGG F+ G + W+D VGP E RP L+ W
Sbjct: 49 GFRKDVQSLIKELQVPIIRYPGGNFLSG------YNWEDGVGPVENRPRRLDLAWQTTET 102
Query: 297 DGLGFFEGLQLAEDIGALPIWVFNNGISHSDEVDTSVISPFVKEALEGIEFARGSSTSKW 356
+ +G E L + + N G D A +E+ S W
Sbjct: 103 NEVGTNEFLSWPKKVNTEVNMAVNLGTRGID------------AARNLVEYCNHPKGSYW 150
Query: 357 GSVRASMGHPKPFNLKYVAIGNE 379
+R S G+ +P+ +K +GNE
Sbjct: 151 SDLRRSHGYEQPYGIKTWCLGNE 173
>ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
(Arabinosidase 2)
Length = 495
Score = 58.2 bits (139), Expect = 7e-08
Identities = 48/162 (29%), Positives = 69/162 (41%), Gaps = 26/162 (16%)
Query: 220 VWLDQVSAMPTDTFKGHGFRKDLVEMLIQLKPAFLRFPGGCFVEGVQLRNAFRWKDSVGP 279
+W+ S +P +G RKD++E L QL LR+PGGCF + + W + VG
Sbjct: 37 IWVGTDSDIPNI----NGIRKDVLEALKQLHIPVLRWPGGCFAD------EYHWANGVG- 85
Query: 280 WEQRPGHLNDIWNYWTDDG-LGFFEGLQLAEDIGALPIWVFNNGISHSDEVDTSVISPFV 338
R LN W + G E + L E + P N G E +
Sbjct: 86 --DRKTMLNTHWGGTIESNEFGTHEFMMLCELLECEPYICGNVGSGTVQE---------M 134
Query: 339 KEALEGIEFARGSSTSKWGSVRASMGHPKPFNLKYVAIGNED 380
E +E + F G+ S W R G +P+ LKY +GNE+
Sbjct: 135 SEWIEYMTFEEGTPMSDW---RKQNGREEPWKLKYFGVGNEN 173
Score = 35.4 bits (80), Expect = 0.47
Identities = 34/132 (25%), Positives = 57/132 (42%), Gaps = 8/132 (6%)
Query: 523 TPSYWVTYMFKESNGATFLNSQLQTPD---PGSLIASAILCQSPQNNSTYLKIKIANIG- 578
TP+Y V MFK A+ L ++ + D G + S Q + I I NI
Sbjct: 363 TPTYHVFNMFKVHQDASLLATETMSADYEWNGETFPQISISASKQAEGD-INITICNIDH 421
Query: 579 SIPVNLKISLQGYVSKNLAGSTKTVLTSGNILDENTFAAPKKIAPQT-SPLQNPGNEMNV 637
+I L+G A + +LT+ + NTF P + P++ N++ V
Sbjct: 422 QNKAEAEIELRGL--HKAADHSGVILTAEKMNAHNTFDDPHHVKPESFRQYTLSKNKLKV 479
Query: 638 MIPPVSLTVLDM 649
+PP+S+ +L +
Sbjct: 480 KLPPMSVVLLTL 491
>KDSB_RICCN (Q92I96) 3-deoxy-manno-octulosonate cytidylyltransferase
(EC 2.7.7.38) (CMP-KDO synthetase)
(CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS)
Length = 246
Score = 34.3 bits (77), Expect = 1.0
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 188 KGSKWQRVQTILEARASS--SNSNLTLTTTKEGTVWLDQVSAMPT--DTFKGH----GFR 239
K SK+ V I++ S ++SN+T+ GT S +P + F H GFR
Sbjct: 121 KNSKYDVVTPIVKVDRESVKASSNVTVAVDSAGTALYFSRSLIPNGAEEFLYHVGMYGFR 180
Query: 240 KDLVEMLIQLKPAFL 254
K+ +E + LKP FL
Sbjct: 181 KNALEKFVSLKPTFL 195
>MURE_STRP8 (Q8P2B4)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13)
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
Length = 481
Score = 31.6 bits (70), Expect = 6.8
Identities = 42/184 (22%), Positives = 71/184 (37%), Gaps = 46/184 (25%)
Query: 421 ADLYDYHTYPIDARAMFNAYHDFDKSPRNGPKAFVSEYALIGALQAKYGTLLGA---VSE 477
AD Y YH + + +D +G F ++ A A K G +SE
Sbjct: 23 ADGYHYHYQGLSFERL-----SYDSRQVDGKTLFFAKGATFKADYLKEAITNGLQLYISE 77
Query: 478 AGFLIGL--------ERNSDHVAMASYAPLLVNANDRNWNPDA----IVFNSYQAYGTPS 525
+ +G+ ++ +AMA Y NP + F + T +
Sbjct: 78 VDYELGIPVVLVTDIKKAMSLIAMAFYG-----------NPQEKLKLLAFTGTKGKTTAA 126
Query: 526 YWVTYMFKES-------------NGATFLNSQLQTPDPGSLIASAILCQSPQNNSTYLKI 572
Y+ +M KES +G TF SQL TP+ SL A++ + N T+L +
Sbjct: 127 YFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPE--SLDLFAMMAECVTNGMTHLIM 184
Query: 573 KIAN 576
++++
Sbjct: 185 EVSS 188
>SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
(Glycine--tRNA ligase beta chain) (GlyRS)
Length = 701
Score = 31.2 bits (69), Expect = 8.9
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 8/74 (10%)
Query: 298 GLGFFEGLQLAEDIGALPIWVFNNGIS-----HSDEVDTSVISPFVKEALEGIEFARGSS 352
GLGF++ L L + + N + H E +I P V E LEG+ F +
Sbjct: 94 GLGFYQKLGLKDHQYFQTAFKNNKEVLYHAKIHEKEPTKDLIMPIVLEFLEGLNFGK--- 150
Query: 353 TSKWGSVRASMGHP 366
+ +WG+V S P
Sbjct: 151 SMRWGNVEKSFIRP 164
>SYGB_HELPJ (Q9ZKM9) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
(Glycine--tRNA ligase beta chain) (GlyRS)
Length = 701
Score = 31.2 bits (69), Expect = 8.9
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 298 GLGFFEGLQLAEDIGALPIWVFNNGIS-----HSDEVDTSVISPFVKEALEGIEFARGSS 352
GLGF++ L L + + N + H+ + +I P V E LEG+ F +
Sbjct: 94 GLGFYQKLGLKDHQHFQTAFKSNKEVLYHAKIHAKQPTKDLIMPIVLEFLEGLNFGK--- 150
Query: 353 TSKWGSVRASMGHP 366
+ +WG+V S P
Sbjct: 151 SMRWGNVEKSFIRP 164
>MURE_STRP3 (Q8K8H6)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (EC 6.3.2.13)
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
Length = 481
Score = 31.2 bits (69), Expect = 8.9
Identities = 42/184 (22%), Positives = 70/184 (37%), Gaps = 46/184 (25%)
Query: 421 ADLYDYHTYPIDARAMFNAYHDFDKSPRNGPKAFVSEYALIGALQAKYGTLLGA---VSE 477
AD Y YH + +D +G F ++ A A K G +SE
Sbjct: 23 ADEYHYHYQGFSFERL-----SYDSRQVDGKTLFFAKGATFKADYLKEAITNGLQLYISE 77
Query: 478 AGFLIGL--------ERNSDHVAMASYAPLLVNANDRNWNPDA----IVFNSYQAYGTPS 525
+ +G+ ++ +AMA Y NP + F + T +
Sbjct: 78 VDYELGIPVVLVTDIKKAMSLIAMAFYG-----------NPQEKLKLLAFTGTKGKTTAA 126
Query: 526 YWVTYMFKES-------------NGATFLNSQLQTPDPGSLIASAILCQSPQNNSTYLKI 572
Y+ +M KES +G TF SQL TP+ SL A++ + N T+L +
Sbjct: 127 YFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPE--SLDLFAMMAECVTNGMTHLIM 184
Query: 573 KIAN 576
++++
Sbjct: 185 EVSS 188
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,344,663
Number of Sequences: 164201
Number of extensions: 3460002
Number of successful extensions: 7566
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7527
Number of HSP's gapped (non-prelim): 18
length of query: 650
length of database: 59,974,054
effective HSP length: 117
effective length of query: 533
effective length of database: 40,762,537
effective search space: 21726432221
effective search space used: 21726432221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)
Medicago: description of AC141107.11