BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.4 - phase: 0
(374 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FKB3_YEAST (P38911) FK506-binding nuclear protein (EC 5.2.1.8) (... 60 1e-08
UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream bin... 59 2e-08
NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neur... 58 3e-08
IFH1_YEAST (P39520) IFH1 protein (RRP3 protein) 58 4e-08
UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream b... 57 1e-07
SIS2_YEAST (P36024) SIS2 protein (Halotolerance protein HAL3) 56 1e-07
UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream b... 56 2e-07
NMD2_YEAST (P38798) Nonsense-mediated mRNA decay protein 2 (Up-f... 54 5e-07
YB00_YEAST (P38114) Putative 126.9 kDa transcriptional regulator... 54 6e-07
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 54 6e-07
NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof... 54 8e-07
YDE1_SCHPO (Q10435) Probable ubiquitin fusion degradation protei... 53 1e-06
TAF7_YEAST (Q05021) Transcription initiation factor TFIID subuni... 52 2e-06
NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3 52 2e-06
MP62_LYTPI (P91753) Mitotic apparatus protein p62 52 2e-06
FKB4_SPOFR (Q26486) 46 kDa FK506-binding nuclear protein (EC 5.2... 52 3e-06
NUCL_CHICK (P15771) Nucleolin (Protein C23) 50 7e-06
YHT1_YEAST (P38835) Hypothetical 95.1 kDa protein in ACT5-YCK1 i... 50 1e-05
YAB9_YEAST (P31380) Hypothetical 128.5 kDa helicase in ATS1-TPD3... 50 1e-05
UBF2_XENLA (P25980) Nucleolar transcription factor 2 (Upstream b... 50 1e-05
>FKB3_YEAST (P38911) FK506-binding nuclear protein (EC 5.2.1.8)
(Peptidyl-prolyl cis-trans isomerase) (PPIase) (Proline
rotamase) (Nucleolar proline isomerase) (FKBP-70)
Length = 411
Score = 59.7 bits (143), Expect = 1e-08
Identities = 67/311 (21%), Positives = 125/311 (39%), Gaps = 37/311 (11%)
Query: 32 NTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDD 91
+T I+ +D+D G FD + E E+ EE K ++ + +K E + ED D+
Sbjct: 50 STLRIIKRNPDFEDDDFLGGDFDEDEIDEESSEEEEEEKTQKKKKSKGKKAESESED-DE 108
Query: 92 DDDDDSGETESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNS 151
+DDD+ E + +TLSP + +L+++P E++ F + S + L+ N
Sbjct: 109 EDDDEDDEFQESVLLTLSPEAQYQQSLDLTITPEEEVQF----IVTGSYAISLSGNYVKH 164
Query: 152 SSSEP---NNKPQFTASLLKSATKFRVFMSGLKKPKTDSVLEKKQ---HKPERIKFKVEE 205
P + + + + + + + P D ++ E + ++EE
Sbjct: 165 PFDTPMGVEGEDEDEDADIYDSEDYDL------TPDEDEIIGDDMDDLDDEEEEEVRIEE 218
Query: 206 VPIVSLFTRDNSSKNSNKSQTNQNQKVEHESSLSPLEEKRFSKEIVMHKYLKMVKPLYIR 265
V D + + + Q ++V+ E S E+KR +E K K VK + +
Sbjct: 219 VQEEDEEDNDGEEEQEEEEEEEQKEEVKPEPKKSKKEKKRKHEEKEEEKKAKKVKKVEFK 278
Query: 266 VS--------RRYSHGDKSSPSEKVEAETATEGETVAENEENNAKTQSQKQGNNIPAGLR 317
+ DK P KV EG V E+ Q+++ G R
Sbjct: 279 KDLEEGPTKPKSKKEQDKHKPKSKV-----LEGGIVIEDRTIGDGPQAKR-------GAR 326
Query: 318 VVYKHLGKSRS 328
V +++GK ++
Sbjct: 327 VGMRYIGKLKN 337
>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1)
Length = 764
Score = 58.9 bits (141), Expect = 2e-08
Identities = 30/102 (29%), Positives = 54/102 (52%)
Query: 18 GLSPSSDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQ 77
G +P S TT + + + E DD+D+E D + E+ D E ++ +
Sbjct: 661 GPNPKSSRTTLQSKSESEEDDDEEDDDDDDEEEEEDDENGDSSEDGGDSSESSSEDESED 720
Query: 78 EEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDAN 119
+E ++DDD++ DD+DDD+ + ESE + S S+ + SD++
Sbjct: 721 GDENEDDDDDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 762
Score = 51.6 bits (122), Expect = 3e-06
Identities = 31/97 (31%), Positives = 54/97 (54%), Gaps = 7/97 (7%)
Query: 34 TTILTTAESSDDNDDEGPFFDLEFTAPEEE-----EDGFEETNHKNQQQEEEKDEDDDED 88
TT+ + +ES +D+D+E D E ++E EDG + + ++ ++E +D D++ED
Sbjct: 669 TTLQSKSESEEDDDEEDDDDDDEEEEEDDENGDSSEDGGDSS--ESSSEDESEDGDENED 726
Query: 89 SDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPS 125
DDD+DDD + E E + S++ S + S S S
Sbjct: 727 DDDDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSDS 763
>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 848
Score = 58.2 bits (139), Expect = 3e-08
Identities = 69/283 (24%), Positives = 108/283 (37%), Gaps = 55/283 (19%)
Query: 59 APEEEEDGFEETNHKNQQQEEEKD--------EDDDEDSDDDDDDDSGETESEFKITLSP 110
A EEEE+G +E + Q++EEE+D E+ + + + D GE E E T +
Sbjct: 509 AKEEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDEGEQEEEEGETEAE 568
Query: 111 SNNERSDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNSSSSEPNN-----KPQFTAS 165
E ++A E+ +GK+ ++ I + S P + KP+ A
Sbjct: 569 GEGEEAEA------KEEKKIEGKVEEVAVKEEIKVEKPEKAKSPMPKSPVEEVKPKPEAK 622
Query: 166 LLKSATKFRVFMSGLKK------PKTDSVLEKKQHKPERIKFK------VEEVPIVSLFT 213
K K + KK PK + V EKK+ KP+ + K V+E + + T
Sbjct: 623 AGKGEQKEEEKVEEEKKEVTKESPKEEKV-EKKEEKPKDVADKKKAESPVKEKAVEEVIT 681
Query: 214 RDNSSKNSNKSQTNQNQKVEHESSLSPLEEKRFSKEIVMHKYLKMVKPLYIRVSRRYSHG 273
S K S + T + + E EE+ S+E G
Sbjct: 682 ISKSVKVSLEKDTKEEKPQPQEKVKEKAEEEGGSEE----------------------EG 719
Query: 274 DKSSPSEKVEAETATEGETVAENEENNAKTQSQKQGNNIPAGL 316
SP E + + A GE V EE +TQ + G G+
Sbjct: 720 SDRSPQESKKEDIAINGE-VEGKEEEEQETQEKGSGREEEKGV 761
>IFH1_YEAST (P39520) IFH1 protein (RRP3 protein)
Length = 1085
Score = 57.8 bits (138), Expect = 4e-08
Identities = 68/288 (23%), Positives = 117/288 (40%), Gaps = 51/288 (17%)
Query: 45 DNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGETESEF 104
DNDDEG E + + DG E +N+++E E++E+DD++ DDDDDDD +++S+
Sbjct: 104 DNDDEGT----ESSDYQAVTDGEES---ENEEEESEEEEEDDDEDDDDDDDDGSDSDSD- 155
Query: 105 KITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNSSSSEPNNKPQFTA 164
S D N+ L + K +K+ S +N N+N SS N+ +
Sbjct: 156 ------SETSSDDENIDF---VKLTAQRKKRAMKALS-AMNTNSNTLYSSRENSNKNKSV 205
Query: 165 SLLKSATKFRVFMSGLKKPKTDSVLEKKQHKPE-------------RIKFKVEEVPIVSL 211
L +K K + +++ +K E KFK E+ I
Sbjct: 206 KLSPKKENEEEQKEEKEKEKEEQQKQQESNKKEVNGSGTTTTQQALSFKFKKEDDGI--S 263
Query: 212 FTRDNSSKN-----------SNKSQTNQNQKVEHESSLSPLEEKRFS--KEIVMHKYLKM 258
F N N + ++ N+ K++ + L +E RF E +Y
Sbjct: 264 FGNGNEGYNEDIGEEVLDLKNKENNGNEEDKLDSKVMLGNNDELRFPNISESDESEYDID 323
Query: 259 VKPLYIRVSRRYSHGDKSSPSEKVEAETATEGETVAENEENNAKTQSQ 306
+ ++ SHG+ + + ET + + E EE N ++ Q
Sbjct: 324 QDAYFDVINNEDSHGEIGT-----DLETGEDDLPILEEEEQNIVSELQ 366
Score = 33.1 bits (74), Expect = 1.2
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 45/182 (24%)
Query: 34 TTILTTAESSDDNDDEGPFFDLEFT-APEEEEDGFEETNHKNQQQEEEKDEDDD------ 86
+T+L + + D +DDE L+ P ++E ET+H EE + D D
Sbjct: 549 STVLNSGKY-DSSDDEYDNILLDVAHMPSDDECSESETSHDADTDEELRALDSDSLDIGT 607
Query: 87 --EDSDDDDDDDSGET------------------ESEFKITLSPSNNERSDANLSLSPSE 126
+D +DDDDDS T +S+ +L SN+++ +++ S
Sbjct: 608 ELDDDYEDDDDDSSVTNVFIDIDDLDPDSFYFHYDSDGSSSLISSNSDKENSDGSKDCKH 667
Query: 127 DLFFKGKLVQLKSSSFILNNNNNNSSSSEPNNKPQFTASLLKSATKFRVFMS----GLKK 182
DL L++ ++ ++ S+ E +N P ++ +K + +S GL+
Sbjct: 668 DL--------LETVVYV-----DDESTDEDDNLPPPSSRSKNIGSKAKEIVSSNVVGLRP 714
Query: 183 PK 184
PK
Sbjct: 715 PK 716
>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1)
Length = 765
Score = 56.6 bits (135), Expect = 1e-07
Identities = 29/94 (30%), Positives = 53/94 (55%), Gaps = 9/94 (9%)
Query: 34 TTILTTAESSDDNDDEGPFFDLEFTAPEEEEDG---------FEETNHKNQQQEEEKDED 84
TT+ + +ES +D+D+E + E E++E+G E ++ + +E D+D
Sbjct: 669 TTLQSKSESEEDDDEEEEDDEEEEEEEEDDENGDSSEDGGDSSESSSEDESEDGDENDDD 728
Query: 85 DDEDSDDDDDDDSGETESEFKITLSPSNNERSDA 118
DD++ D+DDDD+ + ESE + S S+ + SD+
Sbjct: 729 DDDEDDEDDDDEDEDNESEGSSSSSSSSGDSSDS 762
Score = 35.0 bits (79), Expect = 0.31
Identities = 13/68 (19%), Positives = 35/68 (51%)
Query: 60 PEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDAN 119
P+ + + + +EE+++D++E+ +++DD++ +E + S S +E D +
Sbjct: 664 PKSSRTTLQSKSESEEDDDEEEEDDEEEEEEEEDDENGDSSEDGGDSSESSSEDESEDGD 723
Query: 120 LSLSPSED 127
+ +D
Sbjct: 724 ENDDDDDD 731
Score = 30.8 bits (68), Expect = 5.8
Identities = 15/56 (26%), Positives = 28/56 (49%)
Query: 71 NHKNQQQEEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPSE 126
N K+ + + + +ED D++++DD E E E S+ + D++ S S E
Sbjct: 663 NPKSSRTTLQSKSESEEDDDEEEEDDEEEEEEEEDDENGDSSEDGGDSSESSSEDE 718
>SIS2_YEAST (P36024) SIS2 protein (Halotolerance protein HAL3)
Length = 562
Score = 56.2 bits (134), Expect = 1e-07
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E DD++DE EE++D E+T KN+ ++ D+DDD+D DDDDDDD +
Sbjct: 496 EEEDDDEDE-----------EEDDDEEEDTEDKNENNNDDDDDDDDDDDDDDDDDDDDDD 544
Query: 101 ESE 103
+ E
Sbjct: 545 DDE 547
Score = 53.5 bits (127), Expect = 8e-07
Identities = 25/63 (39%), Positives = 36/63 (56%), Gaps = 6/63 (9%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E DD D+E E EE+ + E N+ + +++ D+DDD+D DDDDDDD E
Sbjct: 497 EEDDDEDEE------EDDDEEEDTEDKNENNNDDDDDDDDDDDDDDDDDDDDDDDDEDED 550
Query: 101 ESE 103
E+E
Sbjct: 551 EAE 553
Score = 38.1 bits (87), Expect = 0.036
Identities = 14/44 (31%), Positives = 27/44 (60%)
Query: 60 PEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGETESE 103
P+ E+ ++ + + EEE ED +E+++DDDDDD + + +
Sbjct: 492 PKNNEEEDDDEDEEEDDDEEEDTEDKNENNNDDDDDDDDDDDDD 535
Score = 36.2 bits (82), Expect = 0.14
Identities = 15/49 (30%), Positives = 26/49 (52%), Gaps = 11/49 (22%)
Query: 66 GFEETNHKNQQQEEEKDEDDDE-----------DSDDDDDDDSGETESE 103
G+ + N + E+E+++DD+E D DDDDDDD + + +
Sbjct: 490 GYPKNNEEEDDDEDEEEDDDEEEDTEDKNENNNDDDDDDDDDDDDDDDD 538
>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1) (Autoantigen NOR-90)
Length = 764
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/102 (27%), Positives = 54/102 (52%)
Query: 18 GLSPSSDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQ 77
G +P S TT + + + + D+++DE D + E+ D E ++ +
Sbjct: 661 GPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESED 720
Query: 78 EEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDAN 119
+E +EDD+++ DD+DDD+ + ESE + S S+ + SD++
Sbjct: 721 GDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 762
Score = 45.4 bits (106), Expect = 2e-04
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 34 TTILTTAESS-DDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDE--DSD 90
TT+ + +ES DD +DE + E +E D E+ ++ E++ ED DE + D
Sbjct: 669 TTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDD 728
Query: 91 DDDDDDSGETESEFKITLSPSNNERSDANLSLSPS 125
+D+DDD + E E + S++ S + S S S
Sbjct: 729 EDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSDS 763
>NMD2_YEAST (P38798) Nonsense-mediated mRNA decay protein 2
(Up-frameshift suppressor 2)
Length = 1089
Score = 54.3 bits (129), Expect = 5e-07
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 16 VVGLSPSSDSTTTTNVNTTTILTTAESSDDNDDEGPFF-----DLEFTAPEEEEDGFEET 70
V G S S + + V +I E DD +D+G D E + P E +
Sbjct: 821 VKGSSASIHNGKESAVPIESITEDDEDEDDENDDGVDLLGEDEDAEISTPNTESAPGKH- 879
Query: 71 NHKNQQQEEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPSEDLFF 130
K + E+E DEDDDED DDDDDDD + E + ++E D DL +
Sbjct: 880 QAKQDESEDEDDEDDDEDDDDDDDDDDDDGEEGDEDDDEDDDDEDDDDEEEEDSDSDLEY 939
Query: 131 KGKL 134
G L
Sbjct: 940 GGDL 943
Score = 40.4 bits (93), Expect = 0.007
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
+ S+D DDE D + ++++DG E ++ ++E D+D++E+ D D + G+
Sbjct: 884 DESEDEDDEDDDEDDDDDDDDDDDDGEEGDEDDDEDDDDEDDDDEEEEDSDSDLEYGGDL 943
Query: 101 ESEFKITL 108
+++ I +
Sbjct: 944 DADRDIEM 951
>YB00_YEAST (P38114) Putative 126.9 kDa transcriptional regulatory
protein in YSW1-RIB7 intergenic region
Length = 1094
Score = 53.9 bits (128), Expect = 6e-07
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 23 SDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKD 82
S+ T T N TT T +++++N++ + + + + +N+ + D
Sbjct: 934 SNGTNTDNNETTGADDTDDNNNNNNNNNKNGNNSSSTINNNNNNYSNSNNNDNDNNINDD 993
Query: 83 EDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSF 142
+DDD+D DDDDDDD + +++ + + ++++ D + S F L L +S+
Sbjct: 994 DDDDDDDDDDDDDDDDDDDNDDDYSNNGADDDEEDDDYDRS-----LFPTGLASLLDASY 1048
Query: 143 ILNNNNNNSSSSEPNNK 159
N+ +E +NK
Sbjct: 1049 PERTANDYRDENEQSNK 1065
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 53.9 bits (128), Expect = 6e-07
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E +D +DE + E A EE+ED EE + + EE+ DED+DED +D+++++ E
Sbjct: 604 EEDEDEEDEDDAEEDEDDA-EEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEE 662
Query: 101 ESEFKITLSPSNNER 115
ESE KI + N +
Sbjct: 663 ESEKKIKRNLRKNAK 677
Score = 52.0 bits (123), Expect = 2e-06
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E ++ ++E + E EE+ED EE ++ E++ +EDDDE+ DD++DDD E
Sbjct: 589 EEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDED 648
Query: 101 ESE 103
E E
Sbjct: 649 EDE 651
Score = 51.2 bits (121), Expect = 4e-06
Identities = 23/63 (36%), Positives = 40/63 (62%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
ES + +DE + E EEEE+ EE + +++EEE++E++DED +D+DD + E
Sbjct: 561 ESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDED 620
Query: 101 ESE 103
++E
Sbjct: 621 DAE 623
Score = 47.8 bits (112), Expect = 5e-05
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E +D D+E E A E+E+D E+ + + +EE D+++D+D D+D+D++ E
Sbjct: 602 EEEEDEDEED-----EDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEE 656
Query: 101 ESE 103
E E
Sbjct: 657 EEE 659
Score = 46.2 bits (108), Expect = 1e-04
Identities = 20/63 (31%), Positives = 38/63 (59%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E +++++E + E EEEE+ EE + ++ E+E+DEDD E+ +DD ++D +
Sbjct: 570 EEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDA 629
Query: 101 ESE 103
E +
Sbjct: 630 EED 632
Score = 46.2 bits (108), Expect = 1e-04
Identities = 20/63 (31%), Positives = 38/63 (59%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E ++ ++E + E EEEE+ EE +++ +E+E D ++DED ++D+DD+ E
Sbjct: 573 EEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEED 632
Query: 101 ESE 103
+ E
Sbjct: 633 DDE 635
Score = 45.4 bits (106), Expect = 2e-04
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDD---DEDSDDDDDDDS 97
E ++ ++E + E EE+ED +E + + + + E+DEDD D+D +DDD++D
Sbjct: 584 EEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDD 643
Query: 98 GETESE 103
E E E
Sbjct: 644 DEDEDE 649
Score = 43.9 bits (102), Expect = 7e-04
Identities = 17/63 (26%), Positives = 40/63 (62%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
ES + ++ + E E+EE+ EE + +++EEE++E+++E+ +++D+D+ E
Sbjct: 554 ESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDED 613
Query: 101 ESE 103
++E
Sbjct: 614 DAE 616
Score = 40.8 bits (94), Expect = 0.006
Identities = 20/69 (28%), Positives = 39/69 (55%), Gaps = 6/69 (8%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKD------EDDDEDSDDDDD 94
E S + +E + EE+E+ EE + +++EEE++ E+++ED D++D+
Sbjct: 553 EESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDE 612
Query: 95 DDSGETESE 103
DD+ E E +
Sbjct: 613 DDAEEDEDD 621
Score = 40.0 bits (92), Expect = 0.010
Identities = 13/63 (20%), Positives = 38/63 (59%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
+ +D +E E +E+E+ EE + +++EEE++E+++E+ +++++++ E
Sbjct: 546 DKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 605
Query: 101 ESE 103
+ +
Sbjct: 606 DED 608
Score = 37.0 bits (84), Expect = 0.081
Identities = 64/315 (20%), Positives = 124/315 (39%), Gaps = 34/315 (10%)
Query: 19 LSPSSDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQE 78
+S S+D T NVN + + D ++ D + +E++D E+ + K ++ +
Sbjct: 96 ISSSTDPTNIINVNDKDNENSVDKKKDKKEKKHKKDKK--EKKEKKDKKEKKDKKEKKHK 153
Query: 79 EEKDEDDDEDSDDDDDDDSGETESEFKITLSPSN-NERSDANLSLSPSEDLFFKGKLVQL 137
+EK D+ ++ + S + K P N E + NL ++ + L
Sbjct: 154 KEKKHKKDKKKKENSEVMSLYKTGQHK----PKNATEHGEENLDEEMVSEINNNAQGGLL 209
Query: 138 KSSSF---------ILNNNNNNSSSSEPNNKPQFTASLLKSATKFRVFMSGLKKPKTDSV 188
SS + I+++ + S+ ++ N+K + + + + + KK +
Sbjct: 210 LSSPYQYREQGGCGIISSVHETSNDTKDNDKENISEDKKEDHQQEEMLKTLDKKERKQKE 269
Query: 189 LE-KKQHKPERIKFKVEEVPIVSLFTRDNSSKNSNKSQTNQNQK-VEHESSLSPLEEKRF 246
E K+Q K E+ K K EE ++ K K + Q +K ++ + + +K+
Sbjct: 270 KEMKEQEKIEKKKKKQEE---KEKKKQEKERKKQEKKERKQKEKEMKKQKKIEKERKKKE 326
Query: 247 SKEIVMHKYLK-----MVKP--------LYIRVSRRYSHGDKSSPSEKVEAETATEGETV 293
KE K+ K M +P I V D ++P E E E E
Sbjct: 327 EKEKKKKKHDKENEETMQQPDQTSEETNNEIMVPLPSPLTDVTTPEEHKEGEHKEEEHKE 386
Query: 294 AENEENNAKTQSQKQ 308
E++E K + K+
Sbjct: 387 GEHKEGEHKEEEHKE 401
Score = 33.1 bits (74), Expect = 1.2
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 61 EEEEDGFEETNHKNQQ----QEEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERS 116
++EED EE+ ++ QE+E++ ++DE+ +++++++ E E E + E
Sbjct: 546 DKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 605
Query: 117 D 117
D
Sbjct: 606 D 606
Score = 31.2 bits (69), Expect = 4.5
Identities = 54/278 (19%), Positives = 106/278 (37%), Gaps = 42/278 (15%)
Query: 61 EEEEDGFEETNHKNQQQ-EEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSN----NER 115
E E + ++ N K++ +EEKDE DD + +D+ + +E + P+N N++
Sbjct: 52 ETELEKNKDDNSKSETLLKEEKDEKDDVPTTSNDNLKNAHNNNEISSSTDPTNIINVNDK 111
Query: 116 SDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNSSSSEPNNKPQFTASLLKSATKFRV 175
+ N S+ +D K K + + + K + K V
Sbjct: 112 DNEN-SVDKKKDKKEKKHKKDKKEKKEKKDKKEKKDKKEKKHKKEKKHKKDKKKKENSEV 170
Query: 176 ---FMSGLKKPKTDSVLEKKQHKPERIK---------------FKVEEVP----IVSLFT 213
+ +G KPK + ++ E + ++ E I S+
Sbjct: 171 MSLYKTGQHKPKNATEHGEENLDEEMVSEINNNAQGGLLLSSPYQYREQGGCGIISSVHE 230
Query: 214 RDNSSKNSNKSQTNQNQKVEH--ESSLSPLEEK-RFSKEIVMHKYLKMVKPLYIRVSRRY 270
N +K+++K ++++K +H E L L++K R KE M + K+ K
Sbjct: 231 TSNDTKDNDKENISEDKKEDHQQEEMLKTLDKKERKQKEKEMKEQEKIEK---------- 280
Query: 271 SHGDKSSPSEKVEAETATEGETVAENEENNAKTQSQKQ 308
K EK + E + + E ++ + + QK+
Sbjct: 281 -KKKKQEEKEKKKQEKERKKQEKKERKQKEKEMKKQKK 317
>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 845
Score = 53.5 bits (127), Expect = 8e-07
Identities = 72/302 (23%), Positives = 118/302 (38%), Gaps = 57/302 (18%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDD--------- 91
E +++ ++E +PE +E+ E + + QEEE++ED+ SD
Sbjct: 488 EEAEEKEEEPEVEKSPVKSPEAKEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKE 547
Query: 92 -DDDDDSGETESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNN 150
+ D GE E E + T + E ++A E+ +GK+ ++ I
Sbjct: 548 GSSEKDEGEQEEEGE-TEAEGEGEEAEA------KEEKKTEGKVEEMAIKEEIKVEKPEK 600
Query: 151 SSSSEPNN-----KPQFTASLLKSATKFRVFMSGLKK-----PKTDSVLEKKQHKPERIK 200
+ S P + KP+ A K K + K+ PK + V EKK+ KP+ +
Sbjct: 601 AKSPVPKSPVEEVKPKPEAKAGKDEQKEEEKVEEKKEVAKESPKEEKV-EKKEEKPKDVP 659
Query: 201 FK------VEEVPIVSLFTRDNSSKNSNKSQTNQNQKVEHESSLSPLEEKRFSKEIVMHK 254
K V+E + + T S K S + T + + + E EE+ S+E V
Sbjct: 660 DKKKAESPVKEKAVEEMITITKSVKVSLEKDTKEEKPQQQEKVKEKAEEEGGSEEEV--- 716
Query: 255 YLKMVKPLYIRVSRRYSHGDKSSPSEKVEAETATEGETVAENEENNAKTQSQKQGNNIPA 314
GDK SP E + + A GE V EE +TQ + G
Sbjct: 717 ------------------GDK-SPQESKKEDIAINGE-VEGKEEEEQETQEKGSGQEEEK 756
Query: 315 GL 316
G+
Sbjct: 757 GV 758
Score = 35.4 bits (80), Expect = 0.24
Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 34/276 (12%)
Query: 41 ESSDDNDDEGPFFD-LEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGE 99
E + D++ D L A E EE +++EE + E S + +++ GE
Sbjct: 457 EETKVEDEKSEMEDALTVIAEELAASAKEEKEEAEEKEEEPEVEKSPVKSPEAKEEEEGE 516
Query: 100 TESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNSSSSEPNNK 159
E E + E D + +E+ G + + SS +E +
Sbjct: 517 KEEEEE---GQEEEEEEDEGVKSDQAEE---GGS--EKEGSSEKDEGEQEEEGETEAEGE 568
Query: 160 PQFTASLLKSATKFRVFMSGLKKPKTDSVLEKKQHKPERIKFKVEEVPIVSLFTRDNSSK 219
+ + + T+ +V +K+ E K KPE+ K V + P+ + +
Sbjct: 569 GEEAEAKEEKKTEGKVEEMAIKE-------EIKVEKPEKAKSPVPKSPVEEV--KPKPEA 619
Query: 220 NSNKSQTNQNQKVEHESSL---SPLEEKRFSKEIVMHKYLKMVKPLYIRVSRRYSHGDKS 276
+ K + + +KVE + + SP EEK KE KP + ++ +S
Sbjct: 620 KAGKDEQKEEEKVEEKKEVAKESPKEEKVEKKE---------EKPKDVPDKKK----AES 666
Query: 277 SPSEKVEAETATEGETVAENEENNAKTQSQKQGNNI 312
EK E T ++V + E + K + +Q +
Sbjct: 667 PVKEKAVEEMITITKSVKVSLEKDTKEEKPQQQEKV 702
>YDE1_SCHPO (Q10435) Probable ubiquitin fusion degradation protein
C12B10.01c
Length = 1647
Score = 52.8 bits (125), Expect = 1e-06
Identities = 52/230 (22%), Positives = 99/230 (42%), Gaps = 36/230 (15%)
Query: 22 SSDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFE----------ETN 71
+S+S TT +++ T+ +SS ND + +D +++ + E E+
Sbjct: 185 NSNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESY 244
Query: 72 HKNQQQEEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSN-----NERSDANLSLSPSE 126
+++ +EE++EDDDE++D+ DD+D E + SP+ NE+ + N+S
Sbjct: 245 ERDEDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEY 304
Query: 127 D---------LFFKGKLVQLKSSSFILNNNNNNSSSSEPNNKPQ----------FTASLL 167
D +G Q +SS + + N NS + + PQ F ++
Sbjct: 305 DETNLLNELGRIRRGNQFQSLASSILSSGNLENSDDEDVSLGPQTYRFNSSFHPFRSAFS 364
Query: 168 KSATKFRVFMSGLKKPKTDSV-LEKKQHKPERIKFKVEEVPIVSLFTRDN 216
+F + G+K +V + Q E E++ +V LF+ D+
Sbjct: 365 APGVQFGRLLEGIKDFSDPTVQMLSLQELSEAFAMSTEDM-LVGLFSTDS 413
>TAF7_YEAST (Q05021) Transcription initiation factor TFIID subunit 7
(TBP-associated factor 7) (TBP-associated factor 67 kDa)
(TAFII-67)
Length = 590
Score = 52.4 bits (124), Expect = 2e-06
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 41 ESSDDNDDEGPFFDLEFTAP-EEEEDGFEETNHKNQQQEEEKDE-DDDEDSDDDDDDDSG 98
E ++ +E DL+ A E EE+G K QQQEE DE D D +DDDDDD G
Sbjct: 361 EEGEEGMEEEEEEDLDLGAAFESEEEGSGAEGDKEQQQEEVGDEVDQDTGGEDDDDDDDG 420
Query: 99 ETESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNSSSSEPNN 158
+ E+ + S + + + L E L +L+++ + + + S ++ P
Sbjct: 421 DIEAAGGESESDDEKDENRQHTELLADE-------LNELETT--LAHTKHKLSKATNPLL 471
Query: 159 KPQFTASLLKSATKFRVFMSGLKKPKTDSVLEKKQHK-----------PERIKFKVEEVP 207
K +F S+ K + + L++ + DSV ++ QH+ E + + EE
Sbjct: 472 KSRFIDSIKKLEKEAELKRKQLQQTE-DSVQKQHQHRSDAETANNVEEEEEEEEEEEEED 530
Query: 208 IVSLFTRDNSSKNSNKSQTNQNQKVEHESSLSPLEE 243
V D+ + ++ ++ + ++ + L+E
Sbjct: 531 EVDEDEEDDEENDEDEDNVHEREHIQENKVVRELDE 566
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3
Length = 802
Score = 52.4 bits (124), Expect = 2e-06
Identities = 24/69 (34%), Positives = 41/69 (58%), Gaps = 6/69 (8%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEED------GFEETNHKNQQQEEEKDEDDDEDSDDDDD 94
E +D +++G EEEE+ G ++ + N+++EEE+++DDD+D DDDDD
Sbjct: 68 EEEEDKEEKGEENGEVINTEEEEEEEHQQKGGNDDDDDDNEEEEEEEEDDDDDDDDDDDD 127
Query: 95 DDSGETESE 103
++ E E E
Sbjct: 128 EEEEEEEEE 136
Score = 45.8 bits (107), Expect = 2e-04
Identities = 21/64 (32%), Positives = 36/64 (55%)
Query: 40 AESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGE 99
AE ++N+++ D+ E++E+ EE +EEE++E + +DDDDDD+ E
Sbjct: 50 AEREEENEEQHELEDVNDEEEEDKEEKGEENGEVINTEEEEEEEHQQKGGNDDDDDDNEE 109
Query: 100 TESE 103
E E
Sbjct: 110 EEEE 113
Score = 43.5 bits (101), Expect = 9e-04
Identities = 33/142 (23%), Positives = 57/142 (39%), Gaps = 35/142 (24%)
Query: 21 PSSDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDG--FEETNHKNQQQE 78
PS + + +N N ++ + + D + + P + E EE E+ E+ N + ++ +
Sbjct: 14 PSPELSVDSNSNENELMNNSSADDGIEFDAPEEEREAEREEENEEQHELEDVNDEEEEDK 73
Query: 79 EEK------------------------DEDDD---------EDSDDDDDDDSGETESEFK 105
EEK D+DDD ED DDDDDDD + E E +
Sbjct: 74 EEKGEENGEVINTEEEEEEEHQQKGGNDDDDDDNEEEEEEEEDDDDDDDDDDDDEEEEEE 133
Query: 106 ITLSPSNNERSDANLSLSPSED 127
++N ++ + ED
Sbjct: 134 EEEEGNDNSSVGSDSAAEDGED 155
Score = 34.7 bits (78), Expect = 0.40
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
E DD+DD+ D E EEEE+G + ++ + E D +D+ED D D E
Sbjct: 113 EEEDDDDDDDDDDDDEEEEEEEEEEGNDNSSVGSDSAAE--DGEDEEDKKDKTKDKEVEL 170
Query: 101 ESEFKITLSPSNNERSDANLSLSPSED 127
E TL + +A ++ E+
Sbjct: 171 RRE---TLEKEQKDVDEAIKKITREEN 194
Score = 33.9 bits (76), Expect = 0.69
Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 43 SDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDD-------EDSDDDDDD 95
+DD+DD+ + E ++++D ++ + +++EEE +++ ED +D++D
Sbjct: 100 NDDDDDDNEEEEEEEEDDDDDDDDDDDDEEEEEEEEEEGNDNSSVGSDSAAEDGEDEEDK 159
Query: 96 DSGETESEFKITLSPSNNERSDAN 119
+ E ++ E+ D +
Sbjct: 160 KDKTKDKEVELRRETLEKEQKDVD 183
>MP62_LYTPI (P91753) Mitotic apparatus protein p62
Length = 411
Score = 52.4 bits (124), Expect = 2e-06
Identities = 41/172 (23%), Positives = 77/172 (43%), Gaps = 35/172 (20%)
Query: 24 DSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDE 83
D T+ V ++ DD DDE D ++ +EEE+ + + ++ EEE++E
Sbjct: 227 DGTSKRKVPNGSVENGHAIDDDEDDEE---DEDYKVGDEEEEEEATSGEEEEEDEEEEEE 283
Query: 84 DDDEDS--DDDDDDDSGETESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSS 141
+DDE+ DDDD+D E + E + + + E + + + P++ KGK+
Sbjct: 284 EDDEEMALGDDDDEDDDEEDDEDEEGMDDEDEEEEEDSSPVKPAKKA--KGKV------- 334
Query: 142 FILNNNNNNSSSSEPNNKPQFTASLLKSATKFRVFMSGLKKPKTDSVLEKKQ 193
+ +++P P+ A+ G+K+ KT S+ + KQ
Sbjct: 335 ---------NGTAKPKGTPKSQAN------------KGMKEKKTYSLEDMKQ 365
Score = 34.7 bits (78), Expect = 0.40
Identities = 29/151 (19%), Positives = 59/151 (38%), Gaps = 19/151 (12%)
Query: 63 EEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGETESEFKITL-------SPSNNER 115
++DG + N E DDDED ++D+D G+ E E + T E
Sbjct: 225 DKDGTSKRKVPNGSVENGHAIDDDEDDEEDEDYKVGDEEEEEEATSGEEEEEDEEEEEEE 284
Query: 116 SDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNSSSSEPNNKPQFTASLLKSATKFRV 175
D ++L +D ++ + + + + + +S +K A K +
Sbjct: 285 DDEEMALGDDDD------------EDDDEEDDEDEEGMDDEDEEEEEDSSPVKPAKKAKG 332
Query: 176 FMSGLKKPKTDSVLEKKQHKPERIKFKVEEV 206
++G KPK + + E+ + +E++
Sbjct: 333 KVNGTAKPKGTPKSQANKGMKEKKTYSLEDM 363
Score = 30.4 bits (67), Expect = 7.6
Identities = 19/62 (30%), Positives = 28/62 (44%), Gaps = 10/62 (16%)
Query: 54 DLEFTAPEEEEDGFEETNHKNQQQE----------EEKDEDDDEDSDDDDDDDSGETESE 103
DLE EE++ EET K + K + D+ D D+DDD++ E E E
Sbjct: 141 DLEDEDEGEEDEEEEETPKKGSPKRIVKKIAAVKGRMKGKGDELDEDEDDDEEEEEEEEE 200
Query: 104 FK 105
+
Sbjct: 201 IQ 202
>FKB4_SPOFR (Q26486) 46 kDa FK506-binding nuclear protein (EC
5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase)
Length = 412
Score = 51.6 bits (122), Expect = 3e-06
Identities = 44/173 (25%), Positives = 73/173 (41%), Gaps = 31/173 (17%)
Query: 40 AESSDDNDDEGP---FFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDD 96
AES D+DDE F D E +E ++ F+ +E+D+D+DE+ ++DDD+D
Sbjct: 151 AESDSDDDDEDQLQKFLDGEDIDTDENDESFKMNTSAEGDDSDEEDDDEDEEDEEDDDED 210
Query: 97 SGETESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSFILNNNNNNSSSSEP 156
E E K ++ + +L S++ KL KS L + +P
Sbjct: 211 DEEEEEAPK---KKKKQPAAEQDSTLDTSKESVDMSKL--SKSQKRRLKKKLQQQAKQQP 265
Query: 157 NNKPQFTASLLKSATKFRVFMSGLKKPKTDSVLEK-KQHKPERIKFKVEEVPI 208
++G+ KPK + +K ++ KPE K EE P+
Sbjct: 266 Q-------------------VNGVDKPKKEEPQQKAEKKKPEA---KKEEAPV 296
>NUCL_CHICK (P15771) Nucleolin (Protein C23)
Length = 694
Score = 50.4 bits (119), Expect = 7e-06
Identities = 32/109 (29%), Positives = 58/109 (52%), Gaps = 10/109 (9%)
Query: 41 ESSDDNDDEGPFFDLEFT-APEEEEDGFEETNHK----NQQQEEEKDEDDDEDSDDDDDD 95
E D+ DDE ++ T AP ++ + T K ++ +E+E+DED+DE+ +DD+++
Sbjct: 180 EEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEEDEDEDEEDEDDEEE 239
Query: 96 DSGETESEFKITLSPSNNERSDANLSLSPSEDLFFKGKLVQLKSSSFIL 144
D E+E E + +P ++ AN S + K K + +S+F L
Sbjct: 240 DEEESEDEKPVKEAPGKRKKEMANKSAPEA-----KKKKTETPASAFSL 283
Score = 40.4 bits (93), Expect = 0.007
Identities = 18/57 (31%), Positives = 36/57 (62%), Gaps = 2/57 (3%)
Query: 71 NHKNQQQEE--EKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPS 125
N KN ++EE E+DEDD++D +D+D+++ + E E + + P+ + + A + P+
Sbjct: 107 NGKNAKKEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKPA 163
Score = 34.7 bits (78), Expect = 0.40
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 17/75 (22%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGF--EETNHKN--------------QQQEEEKDED 84
E DD DDE D E + EEEE + K+ +Q+ EE++E+
Sbjct: 119 EDEDDEDDEEDE-DEEEESDEEEEPAVPVKPAAKKSAAAVPAKKPAVVPAKQESEEEEEE 177
Query: 85 DDEDSDDDDDDDSGE 99
DDE+ D++DD+ E
Sbjct: 178 DDEEEDEEDDESEDE 192
>YHT1_YEAST (P38835) Hypothetical 95.1 kDa protein in ACT5-YCK1
intergenic region
Length = 840
Score = 49.7 bits (117), Expect = 1e-05
Identities = 21/62 (33%), Positives = 36/62 (57%), Gaps = 7/62 (11%)
Query: 38 TTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDS 97
TT ++ D +D+G + E+D ++ + + +E+ D+DDD+D DDDDDDD
Sbjct: 783 TTKDAEDHGEDDGD-------GDDGEDDDDDDDDDDDDDDDEDDDDDDDDDDDDDDDDDD 835
Query: 98 GE 99
G+
Sbjct: 836 GQ 837
Score = 37.7 bits (86), Expect = 0.048
Identities = 25/106 (23%), Positives = 52/106 (48%), Gaps = 14/106 (13%)
Query: 18 GLSPSSDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQ 77
GL+P+ +S T + ++ ++ T ++ NDDE +A E +ED + +
Sbjct: 589 GLAPNGESATDLSQSSRSLCLTNRDAEINDDE--------SATETDED------ENDGET 634
Query: 78 EEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLS 123
+E +D ++D+DD + + +ES++ + R A+ +LS
Sbjct: 635 DEYAGDDTNDDTDDSNIGYAYGSESDYSCLIEERIRNRRRASSTLS 680
>YAB9_YEAST (P31380) Hypothetical 128.5 kDa helicase in ATS1-TPD3
intergenic region
Length = 1131
Score = 49.7 bits (117), Expect = 1e-05
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 20 SPSSDSTTTTNVNTTTILTTAESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEE 79
+P+ T + TT E DD+ D D E E E+D +EE + +EE
Sbjct: 459 APAPVERETKRIRNTTKPKVVEDEDDDVDLEAIDD-ELPQSEHEDDDYEEEDEDYNDEEE 517
Query: 80 EKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPSEDLFFKGK 133
+ + DD +D DDDDD+ ++ I+ + N + FFKGK
Sbjct: 518 DVEYDDGDDDDDDDDEFVATRKNTHVISTTSRNGRKPIVK---------FFKGK 562
Score = 35.0 bits (79), Expect = 0.31
Identities = 43/206 (20%), Positives = 85/206 (40%), Gaps = 26/206 (12%)
Query: 71 NHKNQQQEEEKDEDDDEDSDDDDDDDSGE--TESEFKITLSPS----NNERSDANLSLSP 124
N K + + DE+++E DDDD SG+ TES +I L N+ +LS
Sbjct: 240 NRKYGRHANDNDEEEEESMMTDDDDASGDDYTESTPQINLDEQVLQFINDSDIVDLS-DL 298
Query: 125 SEDLFFKGKLV-----QLKSSSFILNNNNNNSSSSEPNNKPQFTAS------------LL 167
S+ K +L+ ++F+ N N+ + +NK + A+ +
Sbjct: 299 SDTTMHKAQLIASHRPYSSLNAFVNTNFNDKDTEENASNKRKRRAAASANESERLLDKIT 358
Query: 168 KSATKFRVFMSGLKKPKTDSVLEKKQHKPERIKFKVE--EVPIVSLFTRDNSSKNSNKSQ 225
+S + S +KK + L Q K ++ + + E+ +++L D+ + +
Sbjct: 359 QSIRGYNAIESVIKKCSSYGDLVTSQMKKWGVQVEGDNSELDLMNLGEDDDDDNDDGNND 418
Query: 226 TNQNQKVEHESSLSPLEEKRFSKEIV 251
N + + + +EK +K +V
Sbjct: 419 NNNSNNNNTAGADATSKEKEDTKAVV 444
>UBF2_XENLA (P25980) Nucleolar transcription factor 2 (Upstream
binding factor-2) (UBF-2) (xUBF-2)
Length = 701
Score = 49.7 bits (117), Expect = 1e-05
Identities = 26/80 (32%), Positives = 45/80 (55%), Gaps = 5/80 (6%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDD-DSGE 99
E DD+DD+ D + E++ + ++EE +EDDDED+++DDDD +SG
Sbjct: 626 EEDDDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENEDEEDEEDDDEDNEEDDDDNESGS 685
Query: 100 TESEFKITLSPSNNERSDAN 119
+ S + S +++ SD+N
Sbjct: 686 SSS----SSSSADSSDSDSN 701
Score = 45.8 bits (107), Expect = 2e-04
Identities = 21/79 (26%), Positives = 46/79 (57%), Gaps = 1/79 (1%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGET 100
+ DD D+E D + + EDG + ++ + + EE +E++DE+ ++DDD+D+ E
Sbjct: 619 DDEDDEDEEDDDDDDDEDKEDSSEDG-DSSDSSSDEDSEEGEENEDEEDEEDDDEDNEED 677
Query: 101 ESEFKITLSPSNNERSDAN 119
+ + + S S++ +D++
Sbjct: 678 DDDNESGSSSSSSSSADSS 696
Score = 42.4 bits (98), Expect = 0.002
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 41 ESSDDNDDEGPFFDLEFTAPEEEEDGFEETNHKNQQQEEEKDE-DDDEDSDDDDDDDSGE 99
+ DD DDE D + E++ED E+ + + +E+ +E +++ED +D++DDD
Sbjct: 616 DDEDDEDDEDEEDD-DDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENEDEEDEEDDDEDN 674
Query: 100 TESEFKITLSPSNNERSDANLSLSPS 125
E + S++ S A+ S S S
Sbjct: 675 EEDDDDNESGSSSSSSSSADSSDSDS 700
Score = 40.0 bits (92), Expect = 0.010
Identities = 21/56 (37%), Positives = 32/56 (56%), Gaps = 1/56 (1%)
Query: 73 KNQQQEEEKDEDD-DEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPSED 127
+++ ++E DEDD DE+ DDDDDD+ E SE + S++E S+ ED
Sbjct: 611 QSKSDDDEDDEDDEDEEDDDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENEDEED 666
Score = 36.2 bits (82), Expect = 0.14
Identities = 14/69 (20%), Positives = 34/69 (48%)
Query: 59 APEEEEDGFEETNHKNQQQEEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDA 118
AP + ++ + + +E+ ++++D+D DDD+D + + + + S ++E +
Sbjct: 601 APSSKSKLVIQSKSDDDEDDEDDEDEEDDDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEE 660
Query: 119 NLSLSPSED 127
N ED
Sbjct: 661 NEDEEDEED 669
Score = 35.8 bits (81), Expect = 0.18
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 69 ETNHKNQQQEEEKDEDDDEDSDDDDDDDSGETESEFKITLSPSNNERSDANLSLSPSED 127
+ + ++ E+E+D+DDD+D D +D + G++ S E D ED
Sbjct: 615 DDDEDDEDDEDEEDDDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENEDEEDEEDDDED 673
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.304 0.123 0.325
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,764,518
Number of Sequences: 164201
Number of extensions: 2006477
Number of successful extensions: 34567
Number of sequences better than 10.0: 1270
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 565
Number of HSP's that attempted gapping in prelim test: 15316
Number of HSP's gapped (non-prelim): 6983
length of query: 374
length of database: 59,974,054
effective HSP length: 112
effective length of query: 262
effective length of database: 41,583,542
effective search space: 10894888004
effective search space used: 10894888004
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC140913.4