BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.3 - phase: 0
(476 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PRX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1) 34 0.94
MYSN_ACACA (P05659) Myosin II heavy chain, non muscle 34 0.94
LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein) 33 1.6
YO22_CAEEL (P34672) Hypothetical protein ZK688.2 in chromosome III 32 2.7
Y6G2_ENCCU (Q8SV63) Hypothetical protein ECU06_1620 32 2.7
TRHY_SHEEP (P22793) Trichohyalin 32 2.7
IF2_AQUAE (O67825) Translation initiation factor IF-2 32 2.7
HOK1_MOUSE (Q8BIL5) Hook homolog 1 32 2.7
HOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1) 32 2.7
YAJ8_SCHPO (Q09908) Hypothetical protein C30D11.08c in chromosome I 32 3.6
TA4B_HUMAN (Q92750) Transcription initiation factor TFIID 105 kD... 32 3.6
PFDB_PYRHO (O58268) Prefoldin beta subunit (GimC beta subunit) 32 3.6
VIT6_CAEEL (P18948) Vitellogenin 6 precursor 32 4.7
RADI_CHICK (Q9PU45) Radixin 32 4.7
PGDS_RAT (P20786) Alpha platelet-derived growth factor receptor ... 32 4.7
AMIR_PSEAE (P10932) Aliphatic amidase regulator 32 4.7
PFDB_PYRAB (Q9UYJ4) Prefoldin beta subunit (GimC beta subunit) 31 6.1
GOA2_RAT (Q62839) Golgi autoantigen, golgin subfamily A member 2... 31 6.1
UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC ... 31 8.0
PRX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1) 31 8.0
>PRX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1)
Length = 736
Score = 33.9 bits (76), Expect = 0.94
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 390 ESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELEEKDELLMRDSKR 449
E++ KQ W + Q+ +++ R EQK E LK++L +++L + E
Sbjct: 206 ENKRKQNWPQQQQQSFQQLVS--ARKEQKREERRQLKQQLEDMQKQLRQLQE-------- 255
Query: 450 ARGRRDFFARYCDSDSESDD 469
+F+ Y +DSE+D+
Sbjct: 256 -----EFYQIYDSTDSENDE 270
>MYSN_ACACA (P05659) Myosin II heavy chain, non muscle
Length = 1509
Score = 33.9 bits (76), Expect = 0.94
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 392 REKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELEEKDELLMRDSKRAR 451
++K+ +A+ + E+ + LDG+ + LK ++ + +R LEE + R K +
Sbjct: 1143 KQKKALEAKLTELEDQVTALDGQKNAAAAQAKTLKTQVDETKRRLEEAEASAARLEKERK 1202
Query: 452 GRRDFFARY-CDSDSESD 468
D A+ D D+E D
Sbjct: 1203 NALDEVAQLTADLDAERD 1220
>LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)
Length = 1612
Score = 33.1 bits (74), Expect = 1.6
Identities = 28/132 (21%), Positives = 53/132 (39%), Gaps = 15/132 (11%)
Query: 349 DRAEEIGMPYPAMRYVSSSTPSMPLPL-------LPATQDMYQEHLAMESREKQVWKARY 401
D +E P+ + S+PS P PL + +QE L M+S E +
Sbjct: 1408 DDQQEAEQPWAVPSHAGGSSPSSPPPLGGNAPVRTAKAERRHQERLRMQSPELPAPERAL 1467
Query: 402 NQAENLIMTLDGRDEQKTHENLMLKKELAKARRELEEKDELLMRDSKRARGRRDFFARYC 461
+ AE + + R + L+++ +A ++++ S+ RG+R R
Sbjct: 1468 SPAERRALEAEKRALWRAARMKSLEQDALRA--------QMVLSKSQEGRGKRGPLERLA 1519
Query: 462 DSDSESDDPPTT 473
++ S + P T
Sbjct: 1520 EAPSPAPTPSPT 1531
>YO22_CAEEL (P34672) Hypothetical protein ZK688.2 in chromosome III
Length = 632
Score = 32.3 bits (72), Expect = 2.7
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 400 RYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELEEKDELLMRDSKRARGRRDFFAR 459
R+N+A + T RDE+K E L++E + E + K++ + +R R FF
Sbjct: 553 RFNEATGQLETEVKRDEKKKKEE-ELREEGDNGKEEKDNKEDKKEEQDRPSRPTRPFFIG 611
Query: 460 YCDSDSESDDPP 471
S+SE P
Sbjct: 612 VVRSESEDHSHP 623
>Y6G2_ENCCU (Q8SV63) Hypothetical protein ECU06_1620
Length = 579
Score = 32.3 bits (72), Expect = 2.7
Identities = 12/32 (37%), Positives = 24/32 (74%)
Query: 424 MLKKELAKARRELEEKDELLMRDSKRARGRRD 455
M+K+ + RE+E++ + L+RD ++A+GR+D
Sbjct: 302 MIKERQRRREREIEKRVKKLLRDEEKAKGRKD 333
>TRHY_SHEEP (P22793) Trichohyalin
Length = 1549
Score = 32.3 bits (72), Expect = 2.7
Identities = 16/66 (24%), Positives = 33/66 (49%)
Query: 390 ESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELEEKDELLMRDSKR 449
+ RE+Q + Q E + + ++ E L+KEL + L+E+++LL + ++
Sbjct: 614 QERERQYLEKVELQEEEQVQRQEREKRRQERERQYLEKELQRQEERLQEEEQLLREEREK 673
Query: 450 ARGRRD 455
R R+
Sbjct: 674 RRQERE 679
>IF2_AQUAE (O67825) Translation initiation factor IF-2
Length = 805
Score = 32.3 bits (72), Expect = 2.7
Identities = 16/73 (21%), Positives = 38/73 (51%)
Query: 378 ATQDMYQEHLAMESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELE 437
+ +++ +E L + +EK+ K + E + ++ + E++ E KKE K + ++
Sbjct: 127 SVEELIKEILEKKEKEKEKKKVEKERKEEKVRVVEVKKEERKEEKKEEKKEEEKPKIKMS 186
Query: 438 EKDELLMRDSKRA 450
+K+ +MR + A
Sbjct: 187 KKEREIMRKLEHA 199
>HOK1_MOUSE (Q8BIL5) Hook homolog 1
Length = 728
Score = 32.3 bits (72), Expect = 2.7
Identities = 20/60 (33%), Positives = 33/60 (54%), Gaps = 4/60 (6%)
Query: 378 ATQDMYQEHLAMESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELE 437
A Q ++ AME R +K +A N+I TLD + + E ++L+K+LA+ R +E
Sbjct: 591 ALQKKDEDMKAMEER----YKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKERRIE 646
>HOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1)
Length = 728
Score = 32.3 bits (72), Expect = 2.7
Identities = 20/60 (33%), Positives = 33/60 (54%), Gaps = 4/60 (6%)
Query: 378 ATQDMYQEHLAMESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELE 437
A Q ++ AME R +K +A N+I TLD + + E ++L+K+LA+ R +E
Sbjct: 591 ALQKKDEDMKAMEER----YKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKERRIE 646
>YAJ8_SCHPO (Q09908) Hypothetical protein C30D11.08c in chromosome I
Length = 538
Score = 32.0 bits (71), Expect = 3.6
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 358 YPAMRYVSSSTPSMPLPLLPATQD-MYQEHLAMESREKQVWKA-----RYNQAENLIMTL 411
Y R S T S P +PA+ + +AM K+ W A R N A+ L T
Sbjct: 125 YAHHRSADSQTKSALPPNVPASSSPLPPMSIAMNIARKRSWPASLAIERDNTADALFSTE 184
Query: 412 DGRDEQKTHENLMLKKELAKARRELEEKDELLMRDSKRARGRRDF--FARYCDSDSESDD 469
DGR+EQ E + K K R + + +R GRR A C
Sbjct: 185 DGREEQFNLEGVKTKSG-RKVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKCSVCQRLQS 243
Query: 470 PP 471
PP
Sbjct: 244 PP 245
>TA4B_HUMAN (Q92750) Transcription initiation factor TFIID 105 kDa
subunit (TAFII-105) (TAFII105) (Fragment)
Length = 801
Score = 32.0 bits (71), Expect = 3.6
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 4/78 (5%)
Query: 378 ATQDMYQEHLAMESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELE 437
ATQ+ + L + Q Y +EN I+ D R + K E L +L K R++LE
Sbjct: 626 ATQERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKL---DQLEKQRKDLE 682
Query: 438 EKDELLMRDSKRARGRRD 455
E+ E+L++ +K + D
Sbjct: 683 ER-EMLLKAAKSRSNKED 699
>PFDB_PYRHO (O58268) Prefoldin beta subunit (GimC beta subunit)
Length = 117
Score = 32.0 bits (71), Expect = 3.6
Identities = 22/67 (32%), Positives = 35/67 (51%), Gaps = 4/67 (5%)
Query: 381 DMYQEHLAMESREKQVWKARYNQAENLIMTL----DGRDEQKTHENLMLKKELAKARREL 436
D YQ+ L + ++KQ +A N+A+ + + D KT L++K KA +EL
Sbjct: 16 DTYQQQLQLVIQQKQKVQADLNEAKKALEEIETLPDDAQIYKTVGTLIVKTTKEKAVQEL 75
Query: 437 EEKDELL 443
+EK E L
Sbjct: 76 KEKIETL 82
>VIT6_CAEEL (P18948) Vitellogenin 6 precursor
Length = 1650
Score = 31.6 bits (70), Expect = 4.7
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 386 HLAMESREKQVWKARYNQAENLIMTLDGRDEQKT----HENLMLKKELAKARRELEEKDE 441
HL+ R +Q + E D +++ T ++ + K RE+ EK+E
Sbjct: 1466 HLSALYRNQQCGLCGHYDNEKETEFYDAENQENTIPKFAKSYLYKDSKCNYEREMFEKEE 1525
Query: 442 LLMRDSKRARGRRDFFARYCDSDSESDDPPTTSYA 476
R K +D Y +S E DD PT A
Sbjct: 1526 NFQRIEKNQEEEKDQEMNYEESRREQDDEPTEQVA 1560
>RADI_CHICK (Q9PU45) Radixin
Length = 583
Score = 31.6 bits (70), Expect = 4.7
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 364 VSSSTPSMPLPLLPATQDMYQEH---LAMESREKQVWKARYNQAENLIMTLDGRDEQKTH 420
+S+ P P P++P T++ + EH A S E +++E +T ++E+
Sbjct: 467 MSAPPPPPPPPVIPPTENEHDEHDENNAEASAELSSDGVMNHRSEEERVTETQKNERVKK 526
Query: 421 ENLMLKKELAKARRELE--EKDELLMRDSKRARGR 453
+ L ELA+AR E + + D L + K RG+
Sbjct: 527 QLQALSSELAQARDETKKTQNDVLHAENVKAGRGK 561
>PGDS_RAT (P20786) Alpha platelet-derived growth factor receptor
precursor (EC 2.7.1.112) (PDGF-R-alpha)
Length = 1088
Score = 31.6 bits (70), Expect = 4.7
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 33 RYGGLLTLLRTDVEEKLVHTLVQFYDPSFRCFTFPDFQLVPT--LEAYSNLVGLPIAEKA 90
RY L L+R E+ +T++ D + +TF LVP LE + G +
Sbjct: 373 RYQSKLKLIRAKEEDSGHYTIIVQNDDDMKSYTFELSTLVPASILELVDDHHGSGGGQTV 432
Query: 91 PFTGPGTSLTPL--VIAKDLYLKTSDVS--------NHLITKSHIRG 127
T GT L + +I KD+ +D S +++IT+ H RG
Sbjct: 433 RCTAEGTPLPNIEWMICKDIKKCNNDTSWTVLASNVSNIITEFHQRG 479
>AMIR_PSEAE (P10932) Aliphatic amidase regulator
Length = 196
Score = 31.6 bits (70), Expect = 4.7
Identities = 20/69 (28%), Positives = 38/69 (54%), Gaps = 7/69 (10%)
Query: 373 LPLLPATQDMYQEHLAMESREKQVWK-----ARYNQAENLIMTLDGRDEQKTHENLMLKK 427
LP+L + + + +E ++ + +Q+ + AR NQA+ L+M G DE++ H+ L +
Sbjct: 116 LPVLVSARRISEEMAKLKQKTEQLQERIAGQARINQAKALLMQRHGWDEREAHQ--YLSR 173
Query: 428 ELAKARREL 436
E K R +
Sbjct: 174 EAMKRREPI 182
>PFDB_PYRAB (Q9UYJ4) Prefoldin beta subunit (GimC beta subunit)
Length = 117
Score = 31.2 bits (69), Expect = 6.1
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 4/67 (5%)
Query: 381 DMYQEHLAMESREKQVWKARYNQAENLIMTL----DGRDEQKTHENLMLKKELAKARREL 436
+ YQ+ L + ++KQ +A N+A+ + + D KT L++K KA +EL
Sbjct: 16 ESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVGTLIVKTTKEKALQEL 75
Query: 437 EEKDELL 443
+EK E L
Sbjct: 76 KEKVETL 82
>GOA2_RAT (Q62839) Golgi autoantigen, golgin subfamily A member 2
(Cis-Golgi matrix protein GM130)
Length = 986
Score = 31.2 bits (69), Expect = 6.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 373 LPLLPATQDMYQEHLAMESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKA 432
L L +D Y E+L ES +W+ R Q + L EQ+ + L+ LA+
Sbjct: 374 LKQLQVERDQYAENLKGESA---MWQQRVQQMAEQVHALKEEKEQRESQVQELEASLAEL 430
Query: 433 RRELEE 438
R ++EE
Sbjct: 431 RSQMEE 436
>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC
3.1.2.15) (Ubiquitin thiolesterase 8)
(Ubiquitin-specific processing protease 8)
(Deubiquitinating enzyme 8) (mUBPy)
Length = 1080
Score = 30.8 bits (68), Expect = 8.0
Identities = 16/45 (35%), Positives = 27/45 (59%), Gaps = 4/45 (8%)
Query: 415 DEQKTHENLMLKKELAKARRELEEKD----ELLMRDSKRARGRRD 455
+ ++ E+L L+ E A+ R++LEEKD E L + ++ GR D
Sbjct: 101 EAERLSESLKLRYEEAEVRKQLEEKDRREEEQLQQQKRQEMGRED 145
>PRX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1)
Length = 737
Score = 30.8 bits (68), Expect = 8.0
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 378 ATQDMYQEHLAMESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELE 437
A Q + E++ KQ K Q ++ + R EQK E LK++L +++L
Sbjct: 194 APQSVSPRESYRENKRKQ--KLPQQQQQSFQQLVSARKEQKREERRQLKQQLEDMQKQLR 251
Query: 438 EKDELLMRDSKRARGRRDFFARYCDSDSESDD 469
+ E F+ Y +DSE+D+
Sbjct: 252 QLQE-------------KFYQVYDSTDSENDE 270
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,276,278
Number of Sequences: 164201
Number of extensions: 2579296
Number of successful extensions: 7086
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7061
Number of HSP's gapped (non-prelim): 42
length of query: 476
length of database: 59,974,054
effective HSP length: 114
effective length of query: 362
effective length of database: 41,255,140
effective search space: 14934360680
effective search space used: 14934360680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC140913.3