BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140850.3 + phase: 0 /pseudo
(650 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 61 1e-08
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 58 7e-08
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 57 1e-07
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 55 4e-07
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 54 1e-06
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 54 2e-06
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 54 2e-06
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 54 2e-06
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 52 6e-06
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 51 8e-06
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 45 8e-04
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 44 0.001
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 44 0.001
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 44 0.002
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 43 0.003
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 42 0.005
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 41 0.009
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 41 0.011
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 40 0.015
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 40 0.015
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 60.8 bits (146), Expect = 1e-08
Identities = 26/75 (34%), Positives = 46/75 (60%)
Query: 104 WVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGY 163
W + +V V KKDG +RMC+D+R +NK + PLP+I+ + + A K+++ D +G+
Sbjct: 978 WSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGF 1037
Query: 164 NLIKMSPEDREKTSF 178
I + + +E T+F
Sbjct: 1038 WQIPLDEKSKEITAF 1052
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 58.2 bits (139), Expect = 7e-08
Identities = 26/64 (40%), Positives = 43/64 (66%)
Query: 119 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPEDREKTSF 178
R+ +DFR LN+ + D +P+P I +++ N ++K F+ +D SGY+ I ++ DREKTSF
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297
Query: 179 ITHG 182
+G
Sbjct: 298 SVNG 301
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 57.4 bits (137), Expect = 1e-07
Identities = 31/97 (31%), Positives = 55/97 (55%), Gaps = 6/97 (6%)
Query: 90 RLMRVFLMTVEYPEWVANIVPVPKKDG------KVRMCVDFRDLNKASPKDNFPLPHIDV 143
+L++ ++ ++ + ++ VPKK K R+ +D+R +NK D FPLP ID
Sbjct: 336 KLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDD 395
Query: 144 LVDNTAQSKVFSFMDGFSGYNLIKMSPEDREKTSFIT 180
++D ++K FS +D SG++ I++ R+ TSF T
Sbjct: 396 ILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFST 432
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 55.5 bits (132), Expect = 4e-07
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 102 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 161
P W+ P P + + RM VDF+ LN + D +P+P I+ + + +K F+ +D S
Sbjct: 162 PIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTS 221
Query: 162 GYNLIKMSPEDREKTSFIT 180
G++ I M D KT+F T
Sbjct: 222 GFHQIHMKESDIPKTAFST 240
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 54.3 bits (129), Expect = 1e-06
Identities = 24/63 (38%), Positives = 41/63 (64%)
Query: 118 VRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPEDREKTS 177
+RMC+D+R L K + K+ +P+P +D L D AQ+ F+ +D SGY ++++ D KT+
Sbjct: 6 LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65
Query: 178 FIT 180
+T
Sbjct: 66 CVT 68
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 111 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSP 170
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+LI++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 171 EDREKTSF 178
D K +F
Sbjct: 515 GDEHKLAF 522
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 111 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSP 170
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+LI++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 171 EDREKTSF 178
D K +F
Sbjct: 515 GDEHKLAF 522
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 111 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSP 170
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+LI++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 171 EDREKTSF 178
D K +F
Sbjct: 515 GDEHKLAF 522
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 51.6 bits (122), Expect = 6e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 102 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 161
P WV P K R+ +D+R LN+ + D +P+P++D ++ + + F+ +D
Sbjct: 245 PTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAK 304
Query: 162 GYNLIKMSPEDREKTSFIT 180
G++ I+M E KT+F T
Sbjct: 305 GFHQIEMDEESISKTAFST 323
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 51.2 bits (121), Expect = 8e-06
Identities = 30/87 (34%), Positives = 47/87 (53%), Gaps = 11/87 (12%)
Query: 102 PEWVANIVPVPKKDG-----KVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSF 156
P WV VPKK K R+ +D+R LN+ + D P+P++D ++ + F+
Sbjct: 246 PIWV-----VPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTT 300
Query: 157 MDGFSGYNLIKMSPEDREKTSFIT-HG 182
+D G++ I+M PE KT+F T HG
Sbjct: 301 IDLAKGFHQIEMDPESVSKTAFSTKHG 327
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 44.7 bits (104), Expect = 8e-04
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 113 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPED 172
K+ GK RM V+++ +NKA+ D + LP+ D L+ K+FS D SG+ + + E
Sbjct: 295 KRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQES 354
Query: 173 REKTSF 178
R T+F
Sbjct: 355 RPLTAF 360
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 113 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPED 172
K+ GK RM V+++ +NKA+ D + LP+ D L+ K+FS D SG+ + + E
Sbjct: 295 KRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQES 354
Query: 173 REKTSF 178
R T+F
Sbjct: 355 RPLTAF 360
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 113 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPED 172
K+ GK RM V+++ +NKA+ D + LP+ D L+ K+FS D SG+ + + E
Sbjct: 295 KRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQES 354
Query: 173 REKTSF 178
R T+F
Sbjct: 355 RPLTAF 360
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 43.5 bits (101), Expect = 0.002
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 113 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPED 172
+K GK RM +++ LN+ + D + LP I+ ++ +SK++S D SG+ + M E
Sbjct: 1458 EKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEES 1517
Query: 173 REKTSFI 179
T+F+
Sbjct: 1518 VPWTAFL 1524
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 42.7 bits (99), Expect = 0.003
Identities = 20/65 (30%), Positives = 38/65 (57%)
Query: 114 KDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPEDR 173
K GK RM ++++ +N+A+ D++ LP D +++ S FS +D SGY +++ +
Sbjct: 253 KRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTK 312
Query: 174 EKTSF 178
T+F
Sbjct: 313 PLTAF 317
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 42.0 bits (97), Expect = 0.005
Identities = 23/66 (34%), Positives = 37/66 (55%)
Query: 113 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPED 172
K+ GK RM V+++ +NKA+ D + P+ D L+ K+FS D SG+ + + E
Sbjct: 290 KRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQES 349
Query: 173 REKTSF 178
R T+F
Sbjct: 350 RPLTAF 355
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 41.2 bits (95), Expect = 0.009
Identities = 23/75 (30%), Positives = 39/75 (51%)
Query: 108 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIK 167
+ PVPK DGK RM +D+R++NK P H ++ + + K + +D +G+
Sbjct: 214 VYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHSAGILSSIYRGKYKTTLDLTNGFWAHP 273
Query: 168 MSPEDREKTSFITHG 182
++PE T+F G
Sbjct: 274 ITPESYWLTAFTWQG 288
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 40.8 bits (94), Expect = 0.011
Identities = 22/63 (34%), Positives = 35/63 (54%)
Query: 116 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPEDREK 175
G RM V+++ +NKA+ D + LP+ D L+ K+FS D SG+ + + E R
Sbjct: 299 GNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 358
Query: 176 TSF 178
T+F
Sbjct: 359 TAF 361
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 40.4 bits (93), Expect = 0.015
Identities = 22/71 (30%), Positives = 38/71 (52%)
Query: 108 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIK 167
+ PVPK DGK RM +D+R++NK P H ++ + + K + +D +G+
Sbjct: 216 VYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHSAGILSSIFRGKYKTTLDLSNGFWAHS 275
Query: 168 MSPEDREKTSF 178
++PE T+F
Sbjct: 276 ITPESYWLTAF 286
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 40.4 bits (93), Expect = 0.015
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 108 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNLIK 167
+ PVPK DG+ RM +D+R++NK P H ++ + K + +D +G+
Sbjct: 5 VYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHP 64
Query: 168 MSPEDREKTSFITHG 182
++PE T+F G
Sbjct: 65 ITPESYWLTAFTWQG 79
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.347 0.151 0.514
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,630,760
Number of Sequences: 164201
Number of extensions: 2299662
Number of successful extensions: 7127
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7099
Number of HSP's gapped (non-prelim): 35
length of query: 650
length of database: 59,974,054
effective HSP length: 117
effective length of query: 533
effective length of database: 40,762,537
effective search space: 21726432221
effective search space used: 21726432221
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC140850.3