BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140848.2 + phase: 0 /pseudo
(573 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SR5C_ARATH (P37107) Signal recognition particle 54 kDa protein, ... 760 0.0
SR54_SYNP7 (Q55311) Signal sequence binding protein 476 e-134
SR54_SYNY3 (P74214) Signal recognition particle protein (Fifty-f... 473 e-133
SR54_BACSU (P37105) Signal recognition particle protein (Fifty-f... 398 e-110
SR54_STRMU (Q54431) Signal recognition particle protein (Fifty-f... 389 e-107
SR54_MYCTU (P66844) Signal recognition particle protein (Fifty-f... 368 e-101
SR54_MYCBO (P66845) Signal recognition particle protein (Fifty-f... 368 e-101
SR54_ECOLI (P07019) Signal recognition particle protein (Fifty-f... 367 e-101
SR54_MYCLE (O33013) Signal recognition particle protein (Fifty-f... 365 e-100
SR54_RICCN (Q92J55) Signal recognition particle protein (Fifty-f... 355 1e-97
SR54_RICPR (Q9ZDZ0) Signal recognition particle protein (Fifty-f... 348 3e-95
SR54_HAEIN (P44518) Signal recognition particle protein (Fifty-f... 342 2e-93
SR54_AQUAE (O67615) Signal recognition particle protein (Fifty-f... 341 3e-93
SR54_THEAQ (O07347) Signal recognition particle protein (Fifty-f... 332 2e-90
SR54_BUCAP (Q8K9F7) Signal recognition particle protein (Fifty-f... 311 3e-84
SR54_MYCMY (Q01442) Signal recognition particle protein (Fifty-f... 310 7e-84
SR54_HELPJ (Q9ZK62) Signal recognition particle protein (Fifty-f... 309 1e-83
SR54_BUCAI (P57473) Signal recognition particle protein (Fifty-f... 309 1e-83
SR54_METJA (Q57565) Signal recognition 54 kDa protein (SRP54) 309 1e-83
SR54_HELPY (P56005) Signal recognition particle protein (Fifty-f... 306 9e-83
>SR5C_ARATH (P37107) Signal recognition particle 54 kDa protein,
chloroplast precursor (SRP54) (54 chloroplast protein)
(54CP) (FFC)
Length = 564
Score = 760 bits (1962), Expect = 0.0
Identities = 410/559 (73%), Positives = 457/559 (81%), Gaps = 43/559 (7%)
Query: 23 SSSKLCSSLSYRNSFAKEIWGFVQSKSVTMRRMDMIRPVVVRAEMFGQLTTGLESAWNKL 82
+S+ L SS RN +EIW +V+SK+V R VRAEMFGQLT GLE+AW+KL
Sbjct: 38 NSASLSSS---RNLSTREIWSWVKSKTVVGH--GRYRRSQVRAEMFGQLTGGLEAAWSKL 92
Query: 83 KGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVK 142
KGEEVLTKDNI EPMRDIRRALLEADVSLPVVRRFVQSV+DQAVG+GV RGVKPDQQLVK
Sbjct: 93 KGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVK 152
Query: 143 IVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAG 202
IVHDELV+LMGGEVSEL FAK+GPTVILLAGLQGVGKTTVCAKLA Y KKQGKSCML+AG
Sbjct: 153 IVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAG 212
Query: 203 DVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQI 262
DVYRPAAIDQL ILG+QV VPVYTAGTDVKP+DIAKQG +EAKK +DVVI+DTAGRLQI
Sbjct: 213 DVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQI 272
Query: 263 DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGG 322
DK MMDELKDVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGG
Sbjct: 273 DKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGG 332
Query: 323 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAE 382
AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE
Sbjct: 333 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAE 392
Query: 383 DLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVI 442
DLQKKIMSAKFDFNDFLKQTRAVA+MGS++RV+GMIPGM KV+PAQIREAE+NL +ME +
Sbjct: 393 DLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAM 452
Query: 443 IKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFEKYTTIM--------SG 494
I+ MTPEERE+PELLAESP RRKR+A+DSGKTEQQ A+++ + M G
Sbjct: 453 IEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGG 512
Query: 495 KPTCSSTISNACSDEEPNGCNGRWIDANT**S*GST*NRGKVCLYQAPPGTARRRKKAES 554
S + +A E+ +APPGTARR++KA+S
Sbjct: 513 SIPALSGLEDALKAEQ-----------------------------KAPPGTARRKRKADS 543
Query: 555 RRLFADSTLRQP-PRGFGS 572
R+ F +S +P PRGFGS
Sbjct: 544 RKKFVESASSKPGPRGFGS 562
>SR54_SYNP7 (Q55311) Signal sequence binding protein
Length = 485
Score = 476 bits (1226), Expect = e-134
Identities = 241/427 (56%), Positives = 321/427 (74%), Gaps = 1/427 (0%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V ++AV
Sbjct: 1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V G++PDQQ +K+V+DELVQ+MG L A PTVIL+AGLQG GKTT AKL
Sbjct: 61 GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A + +K+G+S +LVA DVYRPAAIDQL LGKQ+DVPV+ G+D P +IA+QG E+A++
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ ID VIVDTAGRLQID MM+EL VK + P EVLLVVD+M GQEAA+L +F+ IG
Sbjct: 181 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE++E L+PF+P+RMA RILGMGDVL
Sbjct: 241 ITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGM-AKVT 425
+ VEKAQE + D E +Q+KI++AKFDF DFLKQ R + MGS++ I +IPG+ K+
Sbjct: 301 TLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKIN 360
Query: 426 PAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNF 485
Q+R+ ER L+ +E +I +MTP+ER P+LL+ SP RR R+A+ G+TE + I+ F
Sbjct: 361 DEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQF 420
Query: 486 EKYTTIM 492
++ T+M
Sbjct: 421 QQMRTMM 427
>SR54_SYNY3 (P74214) Signal recognition particle protein (Fifty-four
homolog)
Length = 482
Score = 473 bits (1216), Expect = e-133
Identities = 239/426 (56%), Positives = 316/426 (74%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V +A+
Sbjct: 1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKAL 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV P QQ +KIV+DELV LMG L A+ PTVIL+AGLQG GKTT AKL
Sbjct: 61 GADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A Y +KQ +S ++VA DVYRPAAIDQL LG+Q+DVPV+ G+D P +IA+QG E+AK+
Sbjct: 121 ALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKE 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+D V++DTAGRLQID MM EL ++K+V+ P + LLVVDAMTGQEAA L TF+ +IG
Sbjct: 181 LGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE++E L+PFYPDR+A RIL MGDVL
Sbjct: 241 ITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE + D E LQ KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM K++
Sbjct: 301 TLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSS 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
I + E+ L+ E +I +MT EER+ P+LLA+SP RR+R+AQ SG +E +++NF
Sbjct: 361 GDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFT 420
Query: 487 KYTTIM 492
K T+M
Sbjct: 421 KMRTMM 426
>SR54_BACSU (P37105) Signal recognition particle protein (Fifty-four
homolog)
Length = 446
Score = 398 bits (1022), Expect = e-110
Identities = 203/427 (47%), Positives = 301/427 (69%), Gaps = 4/427 (0%)
Query: 68 FGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVG 127
F L L+ +K++G+ +++ ++ E MR++R ALLEADV+ VV+ FV+ V+++AVG
Sbjct: 3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVG 62
Query: 128 VGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLA 187
V + + P QQ++K+V +EL +LMGGE S++ AK PTVI++ GLQG GKTT KLA
Sbjct: 63 QDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLA 122
Query: 188 NYF-KKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
N KK + MLVA D+YRPAAI QL LGKQ+D+PV++ G V P +IAKQ E+AK+
Sbjct: 123 NLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKAKE 182
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ D VI+DTAGRL ID +MDEL +VK + NP E+ LVVD+MTGQ+A + +FN ++G
Sbjct: 183 EHYDYVILDTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLG 242
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
+TG +LTKLDGD+RGGAALS++ V+ PIK G GE+++ LEPF+P+RMA RILGMGDVL
Sbjct: 243 LTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVL 302
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ +EKAQ + ++ A++L++K+ + F +DFL+Q V MG + ++ M+PG K+
Sbjct: 303 TLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKG 362
Query: 427 AQ-IREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNF 485
+ I+ E+ L +E IIK+MT E+E+P+++ S RRKR+A+ SG + Q+ + +L F
Sbjct: 363 LKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQF 420
Query: 486 EKYTTIM 492
++ +M
Sbjct: 421 DEMKKMM 427
>SR54_STRMU (Q54431) Signal recognition particle protein (Fifty-four
homolog)
Length = 516
Score = 389 bits (998), Expect = e-107
Identities = 196/429 (45%), Positives = 292/429 (67%), Gaps = 4/429 (0%)
Query: 68 FGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVG 127
F LT L+ + L+G+ L++ ++ E ++IR ALLEADV+LPVV+ F++ V +AVG
Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62
Query: 128 VGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLA 187
V + P QQ++KIV++EL ++G E +E+ + PT+I++ GLQG GKTT KLA
Sbjct: 63 HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLA 122
Query: 188 NYF-KKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
N K++ +++A D+YRPAAIDQL LG+Q++VPV+ GT+ +I QG +AK+
Sbjct: 123 NKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAKE 182
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ D V++DTAGRLQID+ +M EL+D+K + NP E+LLVVD+M GQEAA + FN ++
Sbjct: 183 NRNDYVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLE 242
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
+TG ILTK+DGD+RGGAALSV++++GKPIK G GE++ D+E F+PDRM+ RILGMGD+L
Sbjct: 243 VTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLL 302
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMA-KVT 425
+ +EKA + ++ + +L +K+ FDFNDF++Q V MGS+ ++ MIPGMA
Sbjct: 303 TLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMANNPA 362
Query: 426 PAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNF 485
A ++ E + I+ +MTPEERE P+LL +P RR+R+A SG T + + +F
Sbjct: 363 LANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDF 420
Query: 486 EKYTTIMSG 494
+ +M G
Sbjct: 421 NQAKKMMQG 429
>SR54_MYCTU (P66844) Signal recognition particle protein (Fifty-four
homolog)
Length = 525
Score = 368 bits (945), Expect = e-101
Identities = 199/434 (45%), Positives = 283/434 (64%), Gaps = 9/434 (2%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ L +A L+G+ LT +I R+IR ALLEADVSLPVVR F+ + ++A
Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERAR 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V+ + P QQ+VKIV++EL+ ++GGE EL FAKT PTV++LAGLQG GKTT+ KL
Sbjct: 61 GAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYT----AGTDVKPSD---IAKQ 239
A + QG + +LVA D+ RPAA++QL ++G++ VPV+ A + P D +A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180
Query: 240 GFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT 299
G EA+ K DVVIVDTAGRL ID+ +M + ++ +NP EVL V+DAM GQ+A
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 300 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 359
F +G TG LTKLDGD+RGGAALSV+EV+G PI GE++ED + F+PDRMA RI
Sbjct: 241 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
Query: 360 LGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIP 419
LGMGDVLS +E+A++V + AE+ KI + + DFL+Q AV +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLP 360
Query: 420 GMAKVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTD 479
G A++ A ++ L+ ++ II+ MTP+ER P+++ S RR R+A SG T + +
Sbjct: 361 GAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 480 AILSNFEKYTTIMS 493
++ F + +MS
Sbjct: 419 QLVERFFEARKMMS 432
>SR54_MYCBO (P66845) Signal recognition particle protein (Fifty-four
homolog)
Length = 525
Score = 368 bits (945), Expect = e-101
Identities = 199/434 (45%), Positives = 283/434 (64%), Gaps = 9/434 (2%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ L +A L+G+ LT +I R+IR ALLEADVSLPVVR F+ + ++A
Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERAR 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V+ + P QQ+VKIV++EL+ ++GGE EL FAKT PTV++LAGLQG GKTT+ KL
Sbjct: 61 GAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYT----AGTDVKPSD---IAKQ 239
A + QG + +LVA D+ RPAA++QL ++G++ VPV+ A + P D +A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180
Query: 240 GFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT 299
G EA+ K DVVIVDTAGRL ID+ +M + ++ +NP EVL V+DAM GQ+A
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 300 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 359
F +G TG LTKLDGD+RGGAALSV+EV+G PI GE++ED + F+PDRMA RI
Sbjct: 241 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
Query: 360 LGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIP 419
LGMGDVLS +E+A++V + AE+ KI + + DFL+Q AV +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLP 360
Query: 420 GMAKVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTD 479
G A++ A ++ L+ ++ II+ MTP+ER P+++ S RR R+A SG T + +
Sbjct: 361 GAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 480 AILSNFEKYTTIMS 493
++ F + +MS
Sbjct: 419 QLVERFFEARKMMS 432
>SR54_ECOLI (P07019) Signal recognition particle protein (Fifty-four
homolog) (P48)
Length = 453
Score = 367 bits (942), Expect = e-101
Identities = 199/430 (46%), Positives = 274/430 (63%), Gaps = 7/430 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF LT L + G LT+DN+ + +R++R ALLEADV+LPVVR F+ V ++AV
Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V + + P Q+ VKIV +ELV MG E L A P V+L+AGLQG GKTT KL
Sbjct: 61 GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
Query: 187 ANYFK-KQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAK 245
+ + K K ++V+ DVYRPAAI QL L +QV V + + KP DI +EAK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Query: 246 KKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEI 305
K DV++VDTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Query: 306 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 365
+TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
Query: 366 LSFVEKAQEVMQQEDAEDLQKKIMSAK-FDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
LS +E + + + AE L K+ FD NDFL+Q R + MG ++ ++G +PGM ++
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360
Query: 425 TPAQIREA--ERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAIL 482
P ++ ++ L ME II +MT +ER KPE++ S R++R+A G Q + +L
Sbjct: 361 -PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLL 417
Query: 483 SNFEKYTTIM 492
F+ +M
Sbjct: 418 KQFDDMQRMM 427
>SR54_MYCLE (O33013) Signal recognition particle protein (Fifty-four
homolog)
Length = 521
Score = 365 bits (938), Expect = e-100
Identities = 197/434 (45%), Positives = 280/434 (64%), Gaps = 9/434 (2%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ L L+G+ LT +I R+IR AL EADVSLPVVR FV + ++A
Sbjct: 1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERAR 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V+ + P QQ+VKIV++EL+ ++GGE +L FAKT PTV++LAGLQG GKTT+ KL
Sbjct: 61 GTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYT----AGTDVKPSD---IAKQ 239
A ++QG + +LVA D+ RPAA++QL ++G++ VPV+ A D P D +A
Sbjct: 121 AVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASA 180
Query: 240 GFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT 299
G EA+ K DVVIVDTAGRL ID +M + ++ +NP EVL V+DAM GQ+A
Sbjct: 181 GLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 300 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 359
F +G TG +LTKLDGD+RGGAALSV+EV+G PI GE+++D + F+PDRMA RI
Sbjct: 241 AFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRI 300
Query: 360 LGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIP 419
LGMGDVLS +E+A++V E AE KI++ + DFL+Q AV +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLP 360
Query: 420 GMAKVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTD 479
G +V + ++ L+ ++ II+ MTP+ER P+++ S RR R+A SG T + +
Sbjct: 361 GAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 480 AILSNFEKYTTIMS 493
++ F + +MS
Sbjct: 419 QLVDRFFEARKMMS 432
>SR54_RICCN (Q92J55) Signal recognition particle protein (Fifty-four
homolog)
Length = 449
Score = 355 bits (912), Expect = 1e-97
Identities = 191/431 (44%), Positives = 276/431 (63%), Gaps = 8/431 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF LT L ++KL +LT+ I MRDIR ALLE+DV+LPV++ F+ V +A+
Sbjct: 1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKAL 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSE--LTFAKTGPTVILLAGLQGVGKTTVCA 184
G V + V P Q ++KI+H+E++ L+ SE L P L+ GLQG GKTT +
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASS 120
Query: 185 KLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEA 244
KLA + Q K +LV+ D YRPAA +QL IL V + KP DI K+ EA
Sbjct: 121 KLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEA 180
Query: 245 KKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLE 304
K DVVI DTAGR QIDKAMM+E +K+++ PTE LLV+D+MTGQ+A ++FN +
Sbjct: 181 KISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEK 240
Query: 305 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 364
+ I+G IL+++DGDS+GGAALSVK ++ KPIK + GE + DLE F +R+A RIL MGD
Sbjct: 241 LAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRILDMGD 300
Query: 365 VLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
++SFVEKA ++ +E+AE K+ KFD ND+L+Q R++ +MG ++ M+PG K+
Sbjct: 301 IISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKI 360
Query: 425 TPAQIREAERN---LEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAI 481
QI +++ N +E E II +MTP+ER+ P+++ S RRKR+A +G T Q+ + +
Sbjct: 361 MD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNIL 417
Query: 482 LSNFEKYTTIM 492
L +++ + IM
Sbjct: 418 LKQYKQISEIM 428
>SR54_RICPR (Q9ZDZ0) Signal recognition particle protein (Fifty-four
homolog)
Length = 449
Score = 348 bits (892), Expect = 3e-95
Identities = 185/431 (42%), Positives = 278/431 (63%), Gaps = 8/431 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF LT L ++KL +LT++ I MRD+R ALLE+DV+LPV++ F++ V +A+
Sbjct: 1 MFKTLTQNLTKIFDKLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIEEVKQKAL 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVS--ELTFAKTGPTVILLAGLQGVGKTTVCA 184
G V + V P Q ++KI+H+E++ L+ S +L P +L+ GLQG GKTT
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASG 120
Query: 185 KLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEA 244
KLA K Q K +LV+ D YRPAA +QL I+ V++ KP DI K+ EA
Sbjct: 121 KLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVKGEKPLDIVKRAIGEA 180
Query: 245 KKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLE 304
+ DVVI DTAGR+QID MM+E +K++LNPTE LLV+D+MTGQ+A TF+ +
Sbjct: 181 QISAYDVVIYDTAGRIQIDNVMMEEALAIKKILNPTETLLVIDSMTGQDAVITAKTFSEK 240
Query: 305 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 364
+ I+G IL+++DGD++GGAALSVK + KPIK + GE++ DLE F +R+A RIL MGD
Sbjct: 241 LEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRILDMGD 300
Query: 365 VLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
++SFV+KA ++ +E+AE K+ S KFD ND+L+Q R++ +MG ++ M+PG K+
Sbjct: 301 IISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKI 360
Query: 425 TPAQIREAERN---LEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAI 481
QI +++ N +E E II +MT +ER+ P+++ S RRKR+A +G T Q+ + +
Sbjct: 361 FD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNIL 417
Query: 482 LSNFEKYTTIM 492
L +++ + +M
Sbjct: 418 LKQYKQISAVM 428
>SR54_HAEIN (P44518) Signal recognition particle protein (Fifty-four
homolog)
Length = 462
Score = 342 bits (877), Expect = 2e-93
Identities = 190/429 (44%), Positives = 266/429 (61%), Gaps = 5/429 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ L + G+ LT+DNI E +R++R ALLEADV+LPVVR F+ V + A+
Sbjct: 1 MFENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESAL 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V + + P Q+ +KIV EL + MG L A P VIL+AGLQG GKTT KL
Sbjct: 61 GEEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLATQPPAVILMAGLQGAGKTTSVGKL 120
Query: 187 ANYFKKQGKSCMLV-AGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAK 245
A + +++ K +LV + DVYRPAAI QL L + V V + + P DIAK +AK
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180
Query: 246 KKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEI 305
K DV+IVDTAGRL +D MMDE+K V LNP E L VDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFNEAL 240
Query: 306 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 365
+TG ILTK+DGD+RGGAALS+++++GKPIK +G GE+ E LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDV 300
Query: 366 LSFVEKAQEVMQQEDAEDLQKKIMSA-KFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
LS +E + + +E AE + +K F +DF +Q + +MG + ++ +PG +
Sbjct: 301 LSLIEDLERSVDREKAEKMAQKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNL 360
Query: 425 TPAQIREAERNLEI-MEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILS 483
+ + + + + ME II +MT +ER P+++ S RR+R+A SG Q + +L
Sbjct: 361 SEHVKNQVDDKMFVKMEAIINSMTLKERANPDIIKGS--RRRRIALGSGTQVQDVNKLLK 418
Query: 484 NFEKYTTIM 492
F++ +M
Sbjct: 419 QFDEMQRMM 427
>SR54_AQUAE (O67615) Signal recognition particle protein (Fifty-four
homolog)
Length = 454
Score = 341 bits (875), Expect = 3e-93
Identities = 179/426 (42%), Positives = 274/426 (64%), Gaps = 8/426 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
M LT A KL +T+ NI + +R+IR ALLEADV V + F++ + ++ V
Sbjct: 1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVV 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V + + P + ++K V++ELV ++GGE ++L K G +L GLQG GKTT K+
Sbjct: 61 GKEVPKNLSPAEFVIKTVYEELVDILGGEKADL---KKG--TVLFVGLQGTGKTTTIGKI 115
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
AN KK G + + D+ RPAA+ QL L ++V VP Y + +IA++ + AK+
Sbjct: 116 ANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYYEFEEGLGAVEIARRAVKRAKE 175
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ +D +++DTAGRL +D+ +M EL+++K V NP+E+L V DAM GQ A TF+ +G
Sbjct: 176 ESVDYLLLDTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLG 235
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
+TG ++TK+DGD+RGG ALSVKEV G PIK +G GE++ED+EPFYPDR+A RILG+GD+
Sbjct: 236 LTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQ 295
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
S VEKAQEV+ ++ A+ + K+M+ +FD D + R + QMG + +++ MIPG+A
Sbjct: 296 SLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAPQL- 354
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
++ E+ + +E II +MTPEER P+++ S R+KR+A+ SG T + +L +E
Sbjct: 355 KHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYE 412
Query: 487 KYTTIM 492
+ +M
Sbjct: 413 EMKKMM 418
>SR54_THEAQ (O07347) Signal recognition particle protein (Fifty-four
homolog)
Length = 429
Score = 332 bits (850), Expect = 2e-90
Identities = 183/425 (43%), Positives = 276/425 (64%), Gaps = 13/425 (3%)
Query: 68 FGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVG 127
F QL+ L+ A +L+G +T++++ +R+IRRAL++ADV+L V R FV+ V ++A+G
Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 60
Query: 128 VGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLA 187
V + P + ++ V++ L + +GGE + L K + L GLQG GKTT AKLA
Sbjct: 61 KQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLA 118
Query: 188 NYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKK 247
Y+K +G+ +LVA D RPAA +QL +LG++V VPV P I ++ E+A+ +
Sbjct: 119 LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 178
Query: 248 KIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGI 307
D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G+
Sbjct: 179 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 238
Query: 308 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLS 367
TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV S
Sbjct: 239 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVAS 298
Query: 368 FVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPA 427
EK + + +A K++ DFLKQ + + ++G S ++G++PG+ P
Sbjct: 299 LAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQ 349
Query: 428 QIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFEK 487
++ E+ ++ +E I+ +MTPEER+ P +L S RRKR+A+ SG + Q+ + + FE+
Sbjct: 350 GLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEE 407
Query: 488 YTTIM 492
+M
Sbjct: 408 MKALM 412
>SR54_BUCAP (Q8K9F7) Signal recognition particle protein (Fifty-four
homolog)
Length = 450
Score = 311 bits (797), Expect = 3e-84
Identities = 167/429 (38%), Positives = 264/429 (60%), Gaps = 5/429 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF LT L + K+ + LT++NI + +R++R+ALLEADV+L V+++F+Q+V+ +A+
Sbjct: 1 MFNNLTERLSQSLRKIINKGRLTEENIKDTIREVRKALLEADVTLSVIKKFIQNVSKKAI 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G + + + P Q+ +KIV +EL+ MG + +L + P +IL+ GLQGVGKTT KL
Sbjct: 61 GHEINKSLTPGQEFIKIVKNELILSMGEKNHDLNLSIQPPAIILVVGLQGVGKTTTLVKL 120
Query: 187 ANYFK-KQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAK 245
A + K K K + V+ D+YR AAI QL IL QV + Y + T P +I K+ E AK
Sbjct: 121 AKWIKEKYKKKILTVSTDIYRAAAIKQLQILSDQVKIDFYLSDTTQTPINITKEAIEHAK 180
Query: 246 KKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEI 305
K D++++DTAGRL I+ MM+E+ ++ + P E LL+VD+M GQ+A + F+ +
Sbjct: 181 LKLYDLLLIDTAGRLHINTEMMNEINTIQNISKPIETLLIVDSMMGQDAINIAKKFSASL 240
Query: 306 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 365
I+G ++TK D D+R G ALS++ ++GKPIK +G GE++ LEPF+P+R+A RILGM V
Sbjct: 241 SISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPFHPERIADRILGMNQV 300
Query: 366 LSFVEKAQEVMQQEDAEDLQKKIMSA-KFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
+S ++ +E + Q ++L KK F+ NDFL Q + + MG+++ I +
Sbjct: 301 ISLIKDIEEKVNQSQVKNLTKKFRKGDDFNLNDFLIQLKEMKNMGNLNYFIEKFSKNKIL 360
Query: 425 TPAQIREAERN-LEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILS 483
+ + +N L +E II +MT +ER P ++ S R++R+A SG Q + +L
Sbjct: 361 SNNPLLGENKNTLNRIEAIIYSMTHKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLLK 418
Query: 484 NFEKYTTIM 492
NF+ IM
Sbjct: 419 NFDNIKKIM 427
>SR54_MYCMY (Q01442) Signal recognition particle protein (Fifty-four
homolog)
Length = 447
Score = 310 bits (794), Expect = 7e-84
Identities = 161/418 (38%), Positives = 268/418 (63%), Gaps = 5/418 (1%)
Query: 71 LTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGV 130
L+ ++ + K L ++NI E +++IR +LLEADV++ + + +V +A+G +
Sbjct: 7 LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYI 66
Query: 131 TRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYF 190
+ G QQ++KIVH+ELV ++G E + L K P+V+++ GLQG GKTT KLA
Sbjct: 67 SEGASAHQQMIKIVHEELVNILGKENAPLDINKK-PSVVMMVGLQGSGKTTTANKLAYLL 125
Query: 191 KKQGKSCMLVAG-DVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKI 249
K+ K +L+ G D+YRP AI+QL LG++ + V+ G P A+Q E AK+
Sbjct: 126 NKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKGKQ-DPVKTAEQALEYAKENNF 184
Query: 250 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITG 309
DVVI+DTAGRLQ+D+ +M EL ++K+ +P E+LLVVD M+GQE + FN ++ ++G
Sbjct: 185 DVVILDTAGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSG 244
Query: 310 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFV 369
++TKLDGD+RGGA LS+ ++ PIK +G GE L FYP RMA R++GMGD+ +
Sbjct: 245 VVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGDIETLF 304
Query: 370 EKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQI 429
E+A E + + + ++ +FD D Q +A+MGS+++++ M+P + KV+ +QI
Sbjct: 305 ERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-INKVSESQI 363
Query: 430 REAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFEK 487
+EA+R L + +++ +MT +ER P +L ++ R+ R+ + SG++E++ + ++++FEK
Sbjct: 364 QEAQRKLAVFSILMDSMTLKERRDPRVL-KAISRKNRIIKGSGRSEKEFNELINSFEK 420
>SR54_HELPJ (Q9ZK62) Signal recognition particle protein (Fifty-four
homolog)
Length = 448
Score = 309 bits (792), Expect = 1e-83
Identities = 170/425 (40%), Positives = 266/425 (62%), Gaps = 14/425 (3%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ G ++A NK++ ++ + + + ++++ LL+ DV V R ++ V Q
Sbjct: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSE-LTFAKTGPTVILLAGLQGVGKTTVCAK 185
G+ + QQ + + L++++ + S TFA+T PTV+L+AGLQG GKTT AK
Sbjct: 59 AGGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAK 113
Query: 186 LANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAK 245
LA+Y K + K +L A D+ R AA++QL +LG+QV V V+ + +IA + AK
Sbjct: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFHE-ENKSVKEIANNALKRAK 172
Query: 246 KKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEI 305
+ + DV+IVD+AGRL IDK +M ELK+VK VLNP EVL V DA++GQ+ TFN EI
Sbjct: 173 EAQFDVLIVDSAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEI 232
Query: 306 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 365
G++G +L+K D DS+GG AL + G P++ +G GE++ DL+ F P+R+ GR++G GD+
Sbjct: 233 GVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGDI 292
Query: 366 LSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVT 425
+S EK V+ +A+DL KK+ +F FNDFL Q V ++GS+S +I MIPG+ +
Sbjct: 293 ISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMA 352
Query: 426 PA-QIREAERNLEIMEV--IIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAIL 482
A + + E +LE+ ++ ++ +MT +ERE PE+L S RRKR+A SG + + I+
Sbjct: 353 SALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINRII 410
Query: 483 SNFEK 487
F++
Sbjct: 411 KRFDQ 415
>SR54_BUCAI (P57473) Signal recognition particle protein (Fifty-four
homolog)
Length = 451
Score = 309 bits (792), Expect = 1e-83
Identities = 169/430 (39%), Positives = 265/430 (61%), Gaps = 6/430 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF LT L + K+ + LT++NI E +R++R+ALLEADV+L V+++F+++V +++
Sbjct: 1 MFNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSI 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G + + + P Q+ +KIV EL+ MG + L F+ P VIL+ GLQG GKTT AKL
Sbjct: 61 GHEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKL 120
Query: 187 ANYFK-KQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAK 245
+ K K K ++ + D YR AAI+QL IL Q+++ + + P +I K + AK
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYAK 180
Query: 246 KKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEI 305
K DV+++DTAGRL IDK MM+E++ ++ + E LL+VD+M GQ+A + FN ++
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDL 240
Query: 306 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 365
I+G ILTK DGDSR G ALS++ ++GKPIK +G GE++ LEPF+P+R+A RILGM D+
Sbjct: 241 LISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRILGMNDI 300
Query: 366 LSFVEKAQEVMQQEDAEDLQKKIMSA-KFDFNDFLKQTRAVAQMGSVSRVIG--MIPGMA 422
+S +E +E + Q + L KK+ F+ NDFL Q + + ++G ++ I
Sbjct: 301 MSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQL 360
Query: 423 KVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAIL 482
+ + + L+ +E +I +MTP+ER KP ++ S R++R+A SG Q + +L
Sbjct: 361 SNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLL 418
Query: 483 SNFEKYTTIM 492
NF+ IM
Sbjct: 419 KNFDDIRRIM 428
>SR54_METJA (Q57565) Signal recognition 54 kDa protein (SRP54)
Length = 451
Score = 309 bits (791), Expect = 1e-83
Identities = 169/423 (39%), Positives = 259/423 (60%), Gaps = 8/423 (1%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
M +L L A NKLK + K I E ++DI+RAL++ADV++ +V + + + +A+
Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
+G+ + ++KIV++ELV+L+G E +L VILL G+QG GKTT AKL
Sbjct: 61 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVK-PSDIAKQGFEEAK 245
A Y +K+G L+A D YRPAA +QL L +++ VP+Y T K P DI K+G E K
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME--K 178
Query: 246 KKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEI 305
KK DV+I+DTAGR + +K +++E+K +K + NP E++LV+D GQ+A F +
Sbjct: 179 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAV 238
Query: 306 GITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 364
G G+I+ TKLDG ++GG ALS + PIK +G GE ++DLEPF P + R+LGMGD
Sbjct: 239 GEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298
Query: 365 VLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
+ S +EKA++++ ++ E + IM KF N+ + Q A+ MGS+ +++ MIPG
Sbjct: 299 LESLLEKAEDMVDEKTEESID-AIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGA 357
Query: 425 TPAQIRE-AERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILS 483
P ++ E ++ +VII +MT EERE P+++ S +R R+A+ SG TE +L
Sbjct: 358 MPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVLR 415
Query: 484 NFE 486
+E
Sbjct: 416 YYE 418
>SR54_HELPY (P56005) Signal recognition particle protein (Fifty-four
homolog)
Length = 448
Score = 306 bits (784), Expect = 9e-83
Identities = 170/426 (39%), Positives = 267/426 (61%), Gaps = 16/426 (3%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ G ++A NK++ ++ + + + ++++ LL+ DV V R ++ V Q
Sbjct: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSE-LTFAKTGPTVILLAGLQGVGKTTVCAK 185
G+ + QQ + + L++++ + S TFA+T PTV+L+AGLQG GKTT AK
Sbjct: 59 LNGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAK 113
Query: 186 LANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPV-YTAGTDVKPSDIAKQGFEEA 244
LA+Y K + K +L A D+ R AA++QL +LG+QV V V Y VK +IA + A
Sbjct: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVK--EIASNALKRA 171
Query: 245 KKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLE 304
K+ + DV++VD+AGRL IDK +M ELK+VK +LNP EVL V DA++GQ+ TFN E
Sbjct: 172 KEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEE 231
Query: 305 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 364
IG++G +L+K D DS+GG AL + G P++ +G GE++ DL+ F P+R+ GR++G GD
Sbjct: 232 IGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291
Query: 365 VLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
++S EK V+ +A+DL KK+ +F FNDFL Q V ++GS+S +I MIPG+ +
Sbjct: 292 IVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNM 351
Query: 425 TPA-QIREAERNLEIMEV--IIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAI 481
A + + E +LE+ ++ ++ +MT +E+E PE+L S RRKR+A SG + + I
Sbjct: 352 ASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEINRI 409
Query: 482 LSNFEK 487
+ F++
Sbjct: 410 IKRFDQ 415
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,269,968
Number of Sequences: 164201
Number of extensions: 2575291
Number of successful extensions: 10210
Number of sequences better than 10.0: 269
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 9842
Number of HSP's gapped (non-prelim): 289
length of query: 573
length of database: 59,974,054
effective HSP length: 116
effective length of query: 457
effective length of database: 40,926,738
effective search space: 18703519266
effective search space used: 18703519266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC140848.2