BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140773.5 - phase: 0 /pseudo
(194 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL22_ARCFU (O28158) Hypothetical protein AF2122 35 0.11
DNJL_MYCPN (Q50312) DnaJ-like protein MG002 homolog 35 0.14
ENGA_AQUAE (O67749) GTP-binding protein engA 31 1.6
COTH_BACSU (Q45535) Inner spore coat protein H 31 1.6
CAP2_MOUSE (Q9CYT6) Adenylyl cyclase-associated protein 2 (CAP 2) 31 2.1
SVC1_HUMAN (Q9UHI7) Solute carrier family 23, member 1 (Sodium-d... 30 2.7
RHOE_RAT (Q6SA80) Rho-related GTP-binding protein RhoE 30 2.7
RHOE_PIG (O77683) Rho-related GTP-binding protein RhoE (Rho8) (R... 30 2.7
RHOE_MOUSE (P61588) Rho-related GTP-binding protein RhoE 30 2.7
RHOE_HUMAN (P61587) Rho-related GTP-binding protein RhoE (Rho8) ... 30 2.7
YER1_SCHPO (O14084) Hypothetical protein C2F3.01 in chromosome I... 29 7.8
TPR_HUMAN (P12270) Nucleoprotein TPR 29 7.8
TEA1_MOUSE (P30051) Transcriptional enhancer factor TEF-1 (TEA d... 29 7.8
TEA1_HUMAN (P28347) Transcriptional enhancer factor TEF-1 (TEA d... 29 7.8
GIDA_MYCGE (P47619) Glucose inhibited division protein A 29 7.8
FOR3_SCHPO (O94532) Formin 3 29 7.8
>YL22_ARCFU (O28158) Hypothetical protein AF2122
Length = 142
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 11 IYMTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQ 70
IY LS + T FL ++L + + + ++ F +++H ++N F VEG S
Sbjct: 44 IYGQLSLLLWGTKFLATILGVTANNATAMANFTDVLHTLSENSYHFFGTVEGESGMAYIA 103
Query: 71 HEPNVNLPVNTQFMEEPDVKEA 92
+ L N Q E+ VK A
Sbjct: 104 KHSYIELSQNQQLSEDMAVKFA 125
>DNJL_MYCPN (Q50312) DnaJ-like protein MG002 homolog
Length = 309
Score = 34.7 bits (78), Expect = 0.14
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 87 PDV-KEAED---KIWKSQVIISCPNSSHEYLGPL--SDESDDQKKLDAVFPWNEAQLPLI 140
PD+ K+ D KI + ++S EY L S+ D K+LD W+E + +
Sbjct: 31 PDINKQGADTFVKINNAYAVLSDTTQKAEYDAMLRFSEFEDRVKRLDFSIKWHEQFMEEL 90
Query: 141 FSKGPYDLSFLKSKFRTEPKIENNEKYLDWLDK 173
+D F++++ T+P NN KY +LDK
Sbjct: 91 QFHHNWDFDFIRNREYTQPTPTNN-KYSSFLDK 122
>ENGA_AQUAE (O67749) GTP-binding protein engA
Length = 433
Score = 31.2 bits (69), Expect = 1.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 125 KLDAVFPWNEAQLPLIFSKGPYDLSFLKSKFRTEPKIENNEKYLDWLDKVEK 176
K+D + PW+E +L I K + L F F K + E+ L+W+D V K
Sbjct: 294 KMD-ISPWSEEELEGIIRKELFFLDFAPIVFTVATKGKGVEELLNWIDVVYK 344
>COTH_BACSU (Q45535) Inner spore coat protein H
Length = 362
Score = 31.2 bits (69), Expect = 1.6
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 76 NLPVNTQFMEEPDVKEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEA 135
NLP+ F+ D++E + IW + + +QK+LD + +
Sbjct: 6 NLPLYQLFVHPKDLRELKKDIWDDDPVPAVMKV-------------NQKRLDIDIAYRGS 52
Query: 136 QLPLIFSKGPYDLSFLKSK-FRTEPKIENNEKYLDWLDKVEKIKGPFWKEMG 186
+ F K Y +SF + K FR +I N +Y D K+ F+ E+G
Sbjct: 53 HI-RDFKKKSYHISFYQPKTFRGAREIHLNAEYKDPSLMRNKLSLDFFSELG 103
>CAP2_MOUSE (Q9CYT6) Adenylyl cyclase-associated protein 2 (CAP 2)
Length = 476
Score = 30.8 bits (68), Expect = 2.1
Identities = 20/77 (25%), Positives = 30/77 (37%), Gaps = 12/77 (15%)
Query: 34 PSPSSTLRFQNI------------VHNSTKNFEIFMARVEGSSSQPTKQHEPNVNLPVNT 81
PSPS + F + V + K ++ R +G PTK H P+ P +
Sbjct: 256 PSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQGQIRSPTKTHTPSPTSPKSN 315
Query: 82 QFMEEPDVKEAEDKIWK 98
+ V E E K W+
Sbjct: 316 SPQKHTPVLELEGKKWR 332
>SVC1_HUMAN (Q9UHI7) Solute carrier family 23, member 1
(Sodium-dependent vitamin C transporter 1) (hSVCT1)
(Na(+)/L-ascorbic acid transporter 1) (Yolk sac
permease-like molecule 3)
Length = 598
Score = 30.4 bits (67), Expect = 2.7
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 67 PTKQHEPNVNLPVNTQFMEEPDVKEAEDKIWKSQVI------ISCPNSSHEYLGPLS 117
P ++ N +LP+NT + P ++E + I S V+ + P + Y+GPL+
Sbjct: 131 PEEEIYGNWSLPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLT 187
>RHOE_RAT (Q6SA80) Rho-related GTP-binding protein RhoE
Length = 244
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/109 (25%), Positives = 46/109 (41%), Gaps = 11/109 (10%)
Query: 45 IVHNSTKNFEIFMARVEGS----SSQPTKQHEPNVNLPVNTQFM-----EEPDVKEAEDK 95
+ N T +FEI R+E S S P + ++ P + + P+ ++ K
Sbjct: 56 VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 115
Query: 96 IWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKG 144
WK ++ CPN+ +G SD D L V N Q P+ + +G
Sbjct: 116 KWKGEIQEFCPNTKMLLVGCKSDLRTDVSTL--VELSNHRQTPVSYDQG 162
>RHOE_PIG (O77683) Rho-related GTP-binding protein RhoE (Rho8)
(Rnd3)
Length = 244
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/109 (25%), Positives = 46/109 (41%), Gaps = 11/109 (10%)
Query: 45 IVHNSTKNFEIFMARVEGS----SSQPTKQHEPNVNLPVNTQFM-----EEPDVKEAEDK 95
+ N T +FEI R+E S S P + ++ P + + P+ ++ K
Sbjct: 56 VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 115
Query: 96 IWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKG 144
WK ++ CPN+ +G SD D L V N Q P+ + +G
Sbjct: 116 KWKGEIQEFCPNTKMLLVGCKSDLRTDVSTL--VELSNHRQTPVSYDQG 162
>RHOE_MOUSE (P61588) Rho-related GTP-binding protein RhoE
Length = 244
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/109 (25%), Positives = 46/109 (41%), Gaps = 11/109 (10%)
Query: 45 IVHNSTKNFEIFMARVEGS----SSQPTKQHEPNVNLPVNTQFM-----EEPDVKEAEDK 95
+ N T +FEI R+E S S P + ++ P + + P+ ++ K
Sbjct: 56 VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 115
Query: 96 IWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKG 144
WK ++ CPN+ +G SD D L V N Q P+ + +G
Sbjct: 116 KWKGEIQEFCPNTKMLLVGCKSDLRTDVSTL--VELSNHRQTPVSYDQG 162
>RHOE_HUMAN (P61587) Rho-related GTP-binding protein RhoE (Rho8)
(Rnd3)
Length = 244
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/109 (25%), Positives = 46/109 (41%), Gaps = 11/109 (10%)
Query: 45 IVHNSTKNFEIFMARVEGS----SSQPTKQHEPNVNLPVNTQFM-----EEPDVKEAEDK 95
+ N T +FEI R+E S S P + ++ P + + P+ ++ K
Sbjct: 56 VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 115
Query: 96 IWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKG 144
WK ++ CPN+ +G SD D L V N Q P+ + +G
Sbjct: 116 KWKGEIQEFCPNTKMLLVGCKSDLRTDVSTL--VELSNHRQTPVSYDQG 162
>YER1_SCHPO (O14084) Hypothetical protein C2F3.01 in chromosome I
precursor
Length = 319
Score = 28.9 bits (63), Expect = 7.8
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 28 LLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHE-PNV--------NLP 78
LL+L+ S +TLRF + +T+ F + ++ V +S P + + P V N+P
Sbjct: 20 LLILWGYSLYNTLRFM-VPGKATEPFTLSLSDVSDDTSAPGEMEKIPRVIHQLWKDENIP 78
Query: 79 ------VNTQFMEEPDVKEAEDKIWKSQVIISCPNSSHEYLGPL 116
VN+ + PD + +W + I+S N ++ + P+
Sbjct: 79 ERWSNTVNSCRRQHPDENGWQFILWTDEKIMSFMNENYSWFMPV 122
>TPR_HUMAN (P12270) Nucleoprotein TPR
Length = 2349
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 6/59 (10%)
Query: 49 STKNFEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEE------PDVKEAEDKIWKSQV 101
++K +E+ VEG + T HE N L TQ E+ D++ A +K+ ++V
Sbjct: 721 ASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEV 779
>TEA1_MOUSE (P30051) Transcriptional enhancer factor TEF-1 (TEA
domain family member 1) (TEAD-1) (Protein GT-IIC)
(Transcription factor 13) (NTEF-1)
Length = 426
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 97 WKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKGPYDLSFL 151
+ + + +++H Y PL ES D +++ FP + L +F KGP + FL
Sbjct: 234 YNKHLFVHIGHANHSYSDPLL-ESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFL 287
>TEA1_HUMAN (P28347) Transcriptional enhancer factor TEF-1 (TEA
domain family member 1) (TEAD-1) (Protein GT-IIC)
(Transcription factor 13) (NTEF-1)
Length = 426
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 97 WKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKGPYDLSFL 151
+ + + +++H Y PL ES D +++ FP + L +F KGP + FL
Sbjct: 234 YNKHLFVHIGHANHSYSDPLL-ESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFL 287
>GIDA_MYCGE (P47619) Glucose inhibited division protein A
Length = 612
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/44 (36%), Positives = 23/44 (51%)
Query: 137 LPLIFSKGPYDLSFLKSKFRTEPKIENNEKYLDWLDKVEKIKGP 180
LP + L ++ + + E I+ NEKY LDK+ KIK P
Sbjct: 517 LPEKYQLDSETLKQIEIEIKYEGYIKKNEKYFKGLDKLSKIKIP 560
>FOR3_SCHPO (O94532) Formin 3
Length = 1461
Score = 28.9 bits (63), Expect = 7.8
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 160 KIENNEKYLDWLDKVEKIKGPFWKEMGVF 188
K+EN KYL D ++K++ F+K + F
Sbjct: 1199 KLENTVKYLCEYDSIDKVRNSFFKNLNSF 1227
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,512,404
Number of Sequences: 164201
Number of extensions: 985014
Number of successful extensions: 2806
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2800
Number of HSP's gapped (non-prelim): 16
length of query: 194
length of database: 59,974,054
effective HSP length: 104
effective length of query: 90
effective length of database: 42,897,150
effective search space: 3860743500
effective search space used: 3860743500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC140773.5