BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140773.4 + phase: 0 /pseudo
(1194 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 37 0.42
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 37 0.42
POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse transcript... 37 0.42
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 36 0.54
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 36 0.54
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 36 0.54
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 36 0.71
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 36 0.71
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 36 0.71
RPC5_YEAST (P07703) DNA-directed RNA polymerases I and III 40 kD... 35 1.2
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 35 1.2
Y275_HAEIN (P43975) Hypothetical protein HI0275 35 1.6
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 35 1.6
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 35 1.6
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 33 3.5
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 33 3.5
LEXA_BACHD (Q9KAD3) LexA repressor (EC 3.4.21.88) 33 6.0
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 32 7.9
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 36.6 bits (83), Expect = 0.42
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ WIEA P K T + V + + I RFG+P+ + TD G
Sbjct: 937 FSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNG 977
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 36.6 bits (83), Expect = 0.42
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ WIEA P K T + V + + I RFG+P+ + TD G
Sbjct: 23 FSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNG 63
>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 473
Score = 36.6 bits (83), Expect = 0.42
Identities = 18/41 (43%), Positives = 24/41 (57%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T + VI + II RFG+P I +D G
Sbjct: 216 FSGWVEAYPAKRETSQVVIKHLILDIIPRFGLPVQIGSDNG 256
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 36.2 bits (82), Expect = 0.54
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T + V + + I RFG+P+ + TD G
Sbjct: 942 FSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNG 982
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 36.2 bits (82), Expect = 0.54
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T + V + + I RFG+P+ + TD G
Sbjct: 942 FSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNG 982
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 36.2 bits (82), Expect = 0.54
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T + V + + I RFG+P+ + TD G
Sbjct: 942 FSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNG 982
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 35.8 bits (81), Expect = 0.71
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T + V + + I RFG+P+ + TD G
Sbjct: 322 FSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNG 362
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 35.8 bits (81), Expect = 0.71
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T + V + + I RFG+P+ + TD G
Sbjct: 937 FSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNG 977
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonuclease)
(Fragment)
Length = 390
Score = 35.8 bits (81), Expect = 0.71
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T + V + + I RFG+P+ + TD G
Sbjct: 146 FSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNG 186
>RPC5_YEAST (P07703) DNA-directed RNA polymerases I and III 40 kDa
polypeptide (EC 2.7.7.6) (AC40) (C37)
Length = 335
Score = 35.0 bits (79), Expect = 1.2
Identities = 31/143 (21%), Positives = 59/143 (40%), Gaps = 14/143 (9%)
Query: 34 KIGLYDSDLKPHNVILTNYEGSSGNSLGAIKLELMVGSTKRITTFMVVPSKANFNVLLGR 93
++ + D + N L N + S N+ I + + F N +V+
Sbjct: 41 EVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFF-----NNTSVIQDE 95
Query: 94 EWIHGVGAVPSTVHQRIAIWKEDGLVENVE-ADQSYFLAEVNTITKRNFDKQLAHIAPVI 152
H +G VP V + W + L ++ + D++ + +N RN D AP
Sbjct: 96 VLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPD------APKG 149
Query: 153 SPGPKQMASNDEIYS--MKLQPE 173
S PK++ +N +Y+ +K +P+
Sbjct: 150 STDPKELYNNAHVYARDLKFEPQ 172
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 35.0 bits (79), Expect = 1.2
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T V I + I+ RFGIP+ + +D G
Sbjct: 904 FSGWVEAFPTKTETALIVCKKILEEILPRFGIPKVLGSDNG 944
>Y275_HAEIN (P43975) Hypothetical protein HI0275
Length = 551
Score = 34.7 bits (78), Expect = 1.6
Identities = 30/113 (26%), Positives = 52/113 (45%), Gaps = 3/113 (2%)
Query: 35 IGLYDSDLKPHNVILTNYEGSSGNSLGAIKLELMVGSTKRITTFMVVPSKANFNVLLGRE 94
+ L +S L PH + + S+ + + + S R+ TF K+ F L G
Sbjct: 215 VTLMESTLNPHQFAFSQ-QSIPPLSMFEPQNDTVFASPLRVHTFAGATWKSEFAFLAGVP 273
Query: 95 WIHGVGAVPSTVHQRIAIWKEDGLVENVEADQSYFLAEVNTITKRNFDKQLAH 147
GA+ S V + + GLV+N++A Q YF ++ TK N++ + A+
Sbjct: 274 STD-FGALASGVFYSVVPHLQSGLVKNLKA-QGYFCVALSPFTKGNYNAKSAY 324
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 34.7 bits (78), Expect = 1.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P + T V I + I RFG+P+ I +D G
Sbjct: 789 FSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVIGSDNG 829
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 34.7 bits (78), Expect = 1.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P + T V I + I RFG+P+ I +D G
Sbjct: 932 FSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSDNG 972
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 33.5 bits (75), Expect = 3.5
Identities = 15/41 (36%), Positives = 23/41 (55%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T V + + I RFG+P+ + +D G
Sbjct: 937 FSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNG 977
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 33.5 bits (75), Expect = 3.5
Identities = 15/41 (36%), Positives = 23/41 (55%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
F+ W+EA P K T V + + I RFG+P+ + +D G
Sbjct: 585 FSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNG 625
>LEXA_BACHD (Q9KAD3) LexA repressor (EC 3.4.21.88)
Length = 207
Score = 32.7 bits (73), Expect = 6.0
Identities = 18/55 (32%), Positives = 32/55 (57%), Gaps = 3/55 (5%)
Query: 154 PGPKQMASNDEIYSMKLQPEAGFVWEKEFRDHDFVMVNQQEAQLDNEDSLVTRAQ 208
P P+Q+ +ND Y++++Q ++ + E D D V+V QQ+ DN D +V +
Sbjct: 109 PLPEQLTANDNTYALRIQGDS--MIEAGIFDGDLVIVRQQQT-ADNGDIIVAMTE 160
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 32.3 bits (72), Expect = 7.9
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 1153 LFTKWIEAIPLKDVTQEEVI-SFIQKFIIYRFGIPETITTDQG 1194
LFTK+ A+P+ D E V+ +F++++ I IP + TDQG
Sbjct: 1561 LFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQG 1603
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.348 0.153 0.528
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,997,876
Number of Sequences: 164201
Number of extensions: 4803352
Number of successful extensions: 15675
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15658
Number of HSP's gapped (non-prelim): 20
length of query: 1194
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1072
effective length of database: 39,941,532
effective search space: 42817322304
effective search space used: 42817322304
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC140773.4