BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140773.3 + phase: 0 /partial
(140 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PCP_BACC1 (Q735N6) Pyrrolidone-carboxylate peptidase (EC 3.4.19.... 33 0.25
PCP_BACAN (Q81NT5) Pyrrolidone-carboxylate peptidase (EC 3.4.19.... 32 0.56
RS1_MYCTU (O06147) 30S ribosomal protein S1 31 0.96
NLG3_RAT (Q62889) Neuroligin 3 precursor (Gliotactin homolog) 30 1.3
NLG3_MOUSE (Q8BYM5) Neuroligin 3 precursor (Gliotactin homolog) 30 1.3
NLG3_HUMAN (Q9NZ94) Neuroligin 3 precursor (Gliotactin homolog) 30 1.3
PCP_BACCR (Q81BT3) Pyrrolidone-carboxylate peptidase (EC 3.4.19.... 30 1.6
LEPA_MYCPU (Q98QW3) GTP-binding protein lepA 29 2.8
RS1_MYCLE (P46836) 30S ribosomal protein S1 29 3.6
FCL_DROME (Q9W1X8) Probable GDP-L-fucose synthetase (EC 1.1.1.27... 29 3.6
UBIG_NITEU (Q81ZZ2) 3-demethylubiquinone-9 3-methyltransferase (... 28 4.8
PMPG_CHLMU (Q9PL45) Probable outer membrane protein pmpG precurs... 28 4.8
NLG3_MACMU (Q8WMH2) Neuroligin 3 (Gliotactin homolog) (Fragment) 28 6.2
Y612_RICPR (P50938) Hypothetical protein RP612 28 8.1
RS4_STRPY (P66567) 30S ribosomal protein S4 28 8.1
RS4_STRP8 (P66569) 30S ribosomal protein S4 28 8.1
RS4_STRP3 (P66568) 30S ribosomal protein S4 28 8.1
POL_FIVT2 (P31822) Pol polyprotein [Contains: Protease (Retropep... 28 8.1
POL_FIVSD (P19028) Pol polyprotein [Contains: Protease (Retropep... 28 8.1
INVA_LYCES (P29000) Acid beta-fructofuranosidase precursor (EC 3... 28 8.1
>PCP_BACC1 (Q735N6) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
(5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
(PGP-I) (Pyrase)
Length = 215
Score = 32.7 bits (73), Expect = 0.25
Identities = 28/101 (27%), Positives = 47/101 (45%), Gaps = 17/101 (16%)
Query: 22 SKKLTLRFIGPYQI-SDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPD--PSHVIQSD 78
+K L + IG Y+I S +V TV ++ +S L++YI + P +I
Sbjct: 24 AKNLHEKTIGEYKIISKQVPTVFHK--------------SISVLKEYIEELAPEFIICIG 69
Query: 79 DVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGAT 119
R ++T+E + + IDD ++ G + V V EG T
Sbjct: 70 QAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGPT 110
>PCP_BACAN (Q81NT5) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
(5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
(PGP-I) (Pyrase)
Length = 215
Score = 31.6 bits (70), Expect = 0.56
Identities = 32/117 (27%), Positives = 54/117 (45%), Gaps = 19/117 (16%)
Query: 22 SKKLTLRFIGPYQI-SDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPD--PSHVIQSD 78
+K L + IG Y+I S +V TV ++ +S L++YI + P +I
Sbjct: 24 AKSLHEKTIGEYKIISKQVPTVFHK--------------SISVLKEYIEELAPEFIICIG 69
Query: 79 DVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEG--ATGESLTWELESKKLE 133
R ++T+E + + IDD ++ G + V V EG A +L + KKL+
Sbjct: 70 QAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLPMKAIVKKLQ 126
>RS1_MYCTU (O06147) 30S ribosomal protein S1
Length = 481
Score = 30.8 bits (68), Expect = 0.96
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 52 LSNLHDVFHVSQLR-KYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKV 100
L + + HVS+L K+I PS V VQV D +TVE L V +D +V
Sbjct: 228 LGGVDGLVHVSELSWKHIDHPSEV-----VQVGDEVTVEVLDVDMDRERV 272
>NLG3_RAT (Q62889) Neuroligin 3 precursor (Gliotactin homolog)
Length = 848
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 38 RVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDP 71
R V + L P+L NLHD+FH + +P P
Sbjct: 617 RATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPP 650
>NLG3_MOUSE (Q8BYM5) Neuroligin 3 precursor (Gliotactin homolog)
Length = 825
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 38 RVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDP 71
R V + L P+L NLHD+FH + +P P
Sbjct: 594 RATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPP 627
>NLG3_HUMAN (Q9NZ94) Neuroligin 3 precursor (Gliotactin homolog)
Length = 848
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 38 RVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDP 71
R V + L P+L NLHD+FH + +P P
Sbjct: 617 RATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPP 650
>PCP_BACCR (Q81BT3) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
(5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
(PGP-I) (Pyrase)
Length = 215
Score = 30.0 bits (66), Expect = 1.6
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 58 VFH--VSQLRKYIPD--PSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKF 113
VFH +S L++YI + P +I R ++T+E + + IDD ++ G + V
Sbjct: 45 VFHKSISVLKEYIEELAPEIIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPV 104
Query: 114 VWEG 117
V EG
Sbjct: 105 VEEG 108
>LEPA_MYCPU (Q98QW3) GTP-binding protein lepA
Length = 597
Score = 29.3 bits (64), Expect = 2.8
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 68 IPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKT--------LRGKEIPLVKFVWE--G 117
I D V D + + N T E LP +KVK + GK+ P++K E
Sbjct: 260 IRDAKDVSVGDTLTLVKNPTKEALP---GYKKVKAVVFTGFYPIDGKDYPVLKESLEKIS 316
Query: 118 ATGESLTWELESKK 131
+ S+TWELES K
Sbjct: 317 LSDSSITWELESSK 330
>RS1_MYCLE (P46836) 30S ribosomal protein S1
Length = 481
Score = 28.9 bits (63), Expect = 3.6
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 52 LSNLHDVFHVSQLR-KYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKV 100
L + + HVS+L K+I PS V VQV + +TVE L V +D +V
Sbjct: 228 LGGVDGLVHVSELSWKHIDHPSEV-----VQVGNEVTVEVLDVDMDRERV 272
>FCL_DROME (Q9W1X8) Probable GDP-L-fucose synthetase (EC 1.1.1.271)
(FX protein)
(GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase)
Length = 321
Score = 28.9 bits (63), Expect = 3.6
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 4/64 (6%)
Query: 67 YIPDPSHVIQSDDVQVRDNLTVET-LPVRIDDRKVKTLRGKEIPLVKFVWEGATGESLTW 125
Y P+ SHVI ++ +T +T +P ++ KV T+ G +PL +FV+ E + W
Sbjct: 173 YNPEVSHVIPGMIYRMHQLVTEKTDVP---ENDKVFTVFGSGMPLRQFVYSRDLAELMIW 229
Query: 126 ELES 129
L +
Sbjct: 230 VLRN 233
>UBIG_NITEU (Q81ZZ2) 3-demethylubiquinone-9 3-methyltransferase (EC
2.1.1.64) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase)
Length = 235
Score = 28.5 bits (62), Expect = 4.8
Identities = 26/72 (36%), Positives = 36/72 (49%), Gaps = 7/72 (9%)
Query: 9 RVTPVTGVG---RALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLR 65
R VTG+ +ALK KL L G Q+ R TV LA +DV ++
Sbjct: 73 RGASVTGIDLSDKALKVAKLHLLESGN-QVDYRKITVE---ALATERPRYYDVVTCMEML 128
Query: 66 KYIPDPSHVIQS 77
+++PDP+ VIQS
Sbjct: 129 EHVPDPASVIQS 140
>PMPG_CHLMU (Q9PL45) Probable outer membrane protein pmpG precursor
(Polymorphic membrane protein G)
Length = 987
Score = 28.5 bits (62), Expect = 4.8
Identities = 37/138 (26%), Positives = 57/138 (40%), Gaps = 16/138 (11%)
Query: 6 VFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRV---GTVVYRV--GLAPYLSNLHDVFH 60
VFF G G A+ +KKLT+ GP Q V G +Y V G ++ D+
Sbjct: 345 VFFSKNIAAGKGGAIYAKKLTISDCGPVQFLGNVANDGGAIYLVDQGELSLSADRGDIIF 404
Query: 61 VSQLRKYIPDPSHVIQSDDVQVRDN-LTVETLPVRIDDRKVKTLRGKEIPLVKF--VWEG 117
L++ + + DV V N +++ T ++ TLR KE + F E
Sbjct: 405 DGNLKRMATQGAATVH--DVMVASNAISMAT------GGQITTLRAKEGRRILFNDPIEM 456
Query: 118 ATGESLTWELESKKLESY 135
A G+ + L + E Y
Sbjct: 457 ANGQPVIQTLTVNEGEGY 474
>NLG3_MACMU (Q8WMH2) Neuroligin 3 (Gliotactin homolog) (Fragment)
Length = 202
Score = 28.1 bits (61), Expect = 6.2
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 38 RVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIP 69
R V + L P+L NLHD+FH + +P
Sbjct: 122 RATKVAFWKHLVPHLYNLHDMFHYTSTTTKVP 153
>Y612_RICPR (P50938) Hypothetical protein RP612
Length = 568
Score = 27.7 bits (60), Expect = 8.1
Identities = 20/78 (25%), Positives = 32/78 (40%)
Query: 62 SQLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGE 121
S L +YI D H++ + D + L E + +K ++ E V E T
Sbjct: 154 SSLIEYIHDNFHLLVASDFSISYKLDNEIYNFSLSSDNIKNMKSIEELPVFLYKEYGTFV 213
Query: 122 SLTWELESKKLESYPELF 139
+ +K SYPE+F
Sbjct: 214 KFYQNIYAKYHVSYPEIF 231
>RS4_STRPY (P66567) 30S ribosomal protein S4
Length = 203
Score = 27.7 bits (60), Expect = 8.1
Identities = 30/118 (25%), Positives = 52/118 (43%), Gaps = 19/118 (16%)
Query: 18 RALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDPSHVIQS 77
+A K K+ TL F + R+ VVYR+GLA Q R+++ + H++
Sbjct: 74 QATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTR---------RQARQFV-NHGHILV- 122
Query: 78 DDVQVRDNLTVETLPVRIDDRKVKTLRGK--EIPLVKFVWEGATGESLTWELESKKLE 133
D V+ R+D +V ++R K ++P + E G +++KLE
Sbjct: 123 ------DGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEATLGRPAFVSFDAEKLE 174
>RS4_STRP8 (P66569) 30S ribosomal protein S4
Length = 203
Score = 27.7 bits (60), Expect = 8.1
Identities = 30/118 (25%), Positives = 52/118 (43%), Gaps = 19/118 (16%)
Query: 18 RALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDPSHVIQS 77
+A K K+ TL F + R+ VVYR+GLA Q R+++ + H++
Sbjct: 74 QATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTR---------RQARQFV-NHGHILV- 122
Query: 78 DDVQVRDNLTVETLPVRIDDRKVKTLRGK--EIPLVKFVWEGATGESLTWELESKKLE 133
D V+ R+D +V ++R K ++P + E G +++KLE
Sbjct: 123 ------DGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEATLGRPAFVSFDAEKLE 174
>RS4_STRP3 (P66568) 30S ribosomal protein S4
Length = 203
Score = 27.7 bits (60), Expect = 8.1
Identities = 30/118 (25%), Positives = 52/118 (43%), Gaps = 19/118 (16%)
Query: 18 RALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDPSHVIQS 77
+A K K+ TL F + R+ VVYR+GLA Q R+++ + H++
Sbjct: 74 QATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTR---------RQARQFV-NHGHILV- 122
Query: 78 DDVQVRDNLTVETLPVRIDDRKVKTLRGK--EIPLVKFVWEGATGESLTWELESKKLE 133
D V+ R+D +V ++R K ++P + E G +++KLE
Sbjct: 123 ------DGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEATLGRPAFVSFDAEKLE 174
>POL_FIVT2 (P31822) Pol polyprotein [Contains: Protease
(Retropepsin) (EC 3.4.23.-); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase
(EC 3.6.1.23) (dUTPase); Integrase (IN)]
Length = 1124
Score = 27.7 bits (60), Expect = 8.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 78 DDVQVRDNLTVETLPVRIDD-RKVKTLRGKEIPLVK------FVWEGATGESLTWELESK 130
DD+ + NL + ++++ RK+ G E P K + W G LTW ++ K
Sbjct: 339 DDIYIGSNLNKKEHKQKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWSIQQK 398
Query: 131 KLE 133
+LE
Sbjct: 399 QLE 401
>POL_FIVSD (P19028) Pol polyprotein [Contains: Protease
(Retropepsin) (EC 3.4.23.-); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase
(EC 3.6.1.23) (dUTPase); Integrase (IN)]
Length = 1124
Score = 27.7 bits (60), Expect = 8.1
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Query: 78 DDVQVRDNLTVETLPVRIDD-RKVKTLRGKEIPLVK------FVWEGATGESLTWELESK 130
DD+ + NL+ + ++++ RK+ G E P K + W G LTW ++ K
Sbjct: 340 DDIYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWTIQQK 399
Query: 131 KLE 133
+LE
Sbjct: 400 QLE 402
>INVA_LYCES (P29000) Acid beta-fructofuranosidase precursor (EC
3.2.1.26) (Acid sucrose-6-phosphate hydrolase) (Acid
invertase) (AI) (Vacuolar invertase)
Length = 636
Score = 27.7 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 5/29 (17%)
Query: 113 FVWEGATGESLT-----WELESKKLESYP 136
FV+ ATG S+T W LES ++S+P
Sbjct: 604 FVFNNATGASVTASVKIWSLESANIQSFP 632
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.143 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,179,157
Number of Sequences: 164201
Number of extensions: 608165
Number of successful extensions: 1309
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 23
length of query: 140
length of database: 59,974,054
effective HSP length: 99
effective length of query: 41
effective length of database: 43,718,155
effective search space: 1792444355
effective search space used: 1792444355
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC140773.3