BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.3 + phase: 0 /pseudo
(1439 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NU4M_TRIRU (Q36834) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 45 0.001
NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 45 0.002
NU4M_RHISA (O99825) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 43 0.007
COX3_TRYBO (Q37355) Cytochrome c oxidase polypeptide III (EC 1.9... 42 0.012
NU4M_PODAN (P15582) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 41 0.027
Y917_AQUAE (O67062) Hypothetical protein AQ_917 40 0.035
NU4M_HANWI (P48917) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 40 0.046
Y265_BUCAP (P42396) Hypothetical UPF0259 protein BUsg265 40 0.060
NU2M_ACACA (Q37376) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 38 0.18
NU4M_PETMA (Q35542) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 38 0.23
NU2M_HANWI (P48906) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 38 0.23
ATP6_APILI (Q00275) ATP synthase a chain (EC 3.6.3.14) (ATPase p... 38 0.23
NU4M_MOUSE (P03911) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 37 0.30
NU4M_YARLI (Q9B6D6) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 37 0.39
COX3_APILI (P34843) Cytochrome c oxidase polypeptide III (EC 1.9... 37 0.51
Y048_UREPA (Q9PR97) Hypothetical protein UU048 36 0.67
CBSB_SULSO (P58030) Cytochrome b558/566 subunit B 36 0.67
YMN4_PODAN (P15564) Hypothetical 50.9 kDa protein in ND4 intron 1 36 0.87
Y421_METTH (O26521) Hypothetical protein MTH421 36 0.87
CYB_TRYBO (Q33568) Cytochrome b 36 0.87
>NU4M_TRIRU (Q36834) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 494
Score = 45.1 bits (105), Expect = 0.001
Identities = 55/194 (28%), Positives = 99/194 (50%), Gaps = 23/194 (11%)
Query: 744 FIINSLILPFSKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMI-FNLERF 802
++ + L++P L+VY +L +YI + + N + +T+L+I ++LSMI F L F
Sbjct: 9 YLFSLLLIP----LIVYFLL-IYIRLRYSNNSNNQIKTIGLTTLIINLILSMIIFILFDF 63
Query: 803 LCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILIL-LSLPVNLQSL--------M 853
+ L ++ I + L L I I + F L +I+ +SL N S+ +
Sbjct: 64 SSKQFQLQLEEI-YKISYFDLYLGIDGISIYFLLLTTMIMPISLVANWNSIDSKNVLSFV 122
Query: 854 ILLLLLHQLYL---LLLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFP 910
I++LLL L L L+L + LF++ F ILP PL L +F + K+R +L +
Sbjct: 123 IIILLLETLLLAVFLVLDILLFYIFFESILP--PLFLLIG--LFGSSDKVRASFYLFLYT 178
Query: 911 IIIFLTIILLLLCL 924
++ L ++L ++ +
Sbjct: 179 LLGSLFMLLSIITM 192
>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 447
Score = 44.7 bits (104), Expect = 0.002
Identities = 73/327 (22%), Positives = 153/327 (46%), Gaps = 47/327 (14%)
Query: 743 FFIINSLILPFSKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNLERF 802
+ ++ ++L ++Y+ + ++ N NL + +L ++I +LL++ FNL
Sbjct: 2 YLLLLLIMLNMLMMSMIYLFMLFMNKMKNNLNLIIGNL------IIINLLLNL-FNLNWI 54
Query: 803 LCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQL 862
D + +S + + L++L IF LI +SL N + + + LLL +
Sbjct: 55 ---DWIYIFCNLSFNMYSYGLIMLTLWIFG-------LIFISLNNNSLNCLFMNLLL-MI 103
Query: 863 YLLLLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHI-------IFLIFFPIIIFL 915
LLL+ L + LLF + E LL +IF + K + +L+F+ +I L
Sbjct: 104 SLLLVFLSMNLLLFY-LFYEFGLL-----LIFYLVVKWGYSENRWLSGFYLMFYTMIFSL 157
Query: 916 TIILLLLCLYIHNLSLNPML-KQVNMSVGCMLCKLNFKLLRKLVLGNLWIYHQMLSLLDV 974
++ ++ +Y+ + SLN ML + +N+++ ML + L+ LV ++++H L V
Sbjct: 158 PMLYIIYYIYLIDYSLNFMLMEMLNLNLNMML--FIYLLMSFLVKIPIYLFHGWLLKAHV 215
Query: 975 DGFTKSNFMLMALLRDIKQDWLPKVTIKLRAWIILIH------------ILQLLNSQQSD 1022
+ + +L +++ + + ++ I + ILI IL L+ Q D
Sbjct: 216 EAPYYGSMILASIMLKLGGYGMLRLMIIYKNEFILIQKILVMINSFGVLILSLMCLSQFD 275
Query: 1023 L-*LLYLPFIICIYINLMSIMPFFMVN 1048
+ ++ + I+ + + +MS+M F ++
Sbjct: 276 MKSIIAISSIVHMGLMIMSMMTFLKIS 302
Score = 37.4 bits (85), Expect = 0.30
Identities = 75/325 (23%), Positives = 142/325 (43%), Gaps = 41/325 (12%)
Query: 555 LILLLIIIKMLVIFAILPSTNIYLSILVPHMLLLNLNF---SI*IFGVLFQLLQFMVIDI 611
L+LLLI++ ML++ + IYL +L + + NLN ++ I +L L ID
Sbjct: 3 LLLLLIMLNMLMM------SMIYLFMLFMNKMKNNLNLIIGNLIIINLLLNLFNLNWIDW 56
Query: 612 FSPF*MTTPDFSGSFFLKPKLKCLHMLRILLL*FRIIFTPPLNSLELIMALNSCYLLFML 671
F + SF + + L I L F + LN L + + L LL L
Sbjct: 57 IYIF------CNLSFNMYSYGLIMLTLWIFGLIFISLNNNSLNCLFMNLLLMISLLLVFL 110
Query: 672 HMALFTRNLV*KLPNKMVELKENINTF*MLVELCFISLNFLLPFGLMLYIMLFSS*IEFL 731
M L L + ++ F ++V+ + +L F LM Y M+FS + ++
Sbjct: 111 SMNLLLFYLFYEFGLLLI--------FYLVVKWGYSENRWLSGFYLMFYTMIFSLPMLYI 162
Query: 732 HHY-FITNHLTSFFIINSLILPFSKFLVVY------VMLPLYILIEPNCNLELESLYS*V 784
+Y ++ ++ +F ++ L L + L +Y V +P+Y+ +E+ Y
Sbjct: 163 IYYIYLIDYSLNFMLMEMLNLNLNMMLFIYLLMSFLVKIPIYLFHGWLLKAHVEAPY--- 219
Query: 785 TSLVIRVLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLS 844
+L S++ L + ML M IL +L++ N F + L L L+ LS
Sbjct: 220 --YGSMILASIMLKLGGY---GMLRLMIIYKNEFILIQKILVMINSFGV--LILSLMCLS 272
Query: 845 LPVNLQSLMILLLLLHQLYLLLLLL 869
+++S++ + ++H +++ ++
Sbjct: 273 -QFDMKSIIAISSIVHMGLMIMSMM 296
>NU4M_RHISA (O99825) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 433
Score = 42.7 bits (99), Expect = 0.007
Identities = 54/264 (20%), Positives = 113/264 (42%), Gaps = 39/264 (14%)
Query: 700 MLVELCFISLNFLL-PFGLMLYIMLFSS*IEFLHHYFITNHLTSFFIINSLILPFSKFLV 758
ML+ + + L FL+ P+ +M+Y+M+ + FL + N+ SF L ++
Sbjct: 1 MLMSVSILCLFFLINPYQIMIYLMIMTL---FLLAKGLINNAESFINFFFFDLMSLSMVI 57
Query: 759 VYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDMLLFMKTISLTL 818
+ V + + +++ N ++ L++ LL + F LE L LF + + +
Sbjct: 58 LTVWISILMIMASKSNNNYKNKIFNFYLLLMMNLLFICFMLENLLM--FYLFFEAVLFPI 115
Query: 819 ILH-------------PLLLLIGNIFLIFPLYLILIL----LSLPVN---LQSLMILLLL 858
IL +L+ +F PL ++++L LS+ N + + L
Sbjct: 116 ILMISGWGSQPERIQAGFYMLMYTVFGSLPLLILMLLKNQSLSIIFNEWLFNEMGFIFFL 175
Query: 859 LHQLYLLLLLLHLFHLLFPDILPETP------LLHLTSKIIFVTIFKLRHIIFL------ 906
+ +L+ + + LFHL P E P L + K+ F +++ + FL
Sbjct: 176 MILGFLVKIPMFLFHLWLPKAHVEAPRAGSMILAGVLLKLGFYGLYRFKSFFFLDLLKFS 235
Query: 907 -IFFPIIIFLTIILLLLCLYIHNL 929
+ I ++ +++ + CLY +++
Sbjct: 236 FVLIVISMWGAVLISIFCLYQNDI 259
>COX3_TRYBO (Q37355) Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Length = 286
Score = 42.0 bits (97), Expect = 0.012
Identities = 70/300 (23%), Positives = 135/300 (44%), Gaps = 39/300 (13%)
Query: 765 LYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDMLLFMKTISLTLILHPLL 824
+Y+ + NL L+ T L I LL ++ + M+L + T ++TL + +
Sbjct: 1 MYLFRIISLNLSGVFLFLSYTPLYITYLLGVVIS-------SMMLTVGTFAITLDIILCI 53
Query: 825 LLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLH--LFHLLFPDILPE 882
L++ FLI L +I +L L S+ +L+ ++ +L + LF + F + E
Sbjct: 54 LVV--CFLITTLLVIDSVLDSIRGLNSVGVLVRIIQYCFLWFVFSEFMLFVVFFYTLYSE 111
Query: 883 TPLLHLTSKIIFVTIF-KLRHII----FLIFFPIIIFLTIILLLLCLYIHNLSLNPMLKQ 937
L+++ I + K +II ++ ++ + F IIL + L+I L N +L
Sbjct: 112 CLLINVEFTNIGCPVTTKYSNIILDLGYIFYWFLFDFFNIILNTVYLFISGLCCNNVLSS 171
Query: 938 VNMSVGCMLCKLNFKLLRKLVLGN------LWIYHQMLSLLDVDGFTKSNFMLMALLRDI 991
+ LC+ LL K++LG+ L+I++Q+ ++ T S + +L I
Sbjct: 172 I-------LCR--EYLLSKIILGSSIFLGLLFIWNQVWE-FNILIITLSVNIFCTILFSI 221
Query: 992 KQDWLPKVTIKLRAWIILIHILQLLNSQQSDL*LLYLPFIICI--YINLMSIMPFFMVNF 1049
V + I+ I+ + N Q + + + I+CI Y + + I+ FF++ F
Sbjct: 222 DTLHFMHVLVG-----IVFMIISIFNIQSKKIGDIRIVLIVCIIFYWHFVDIVWFFLLRF 276
>NU4M_PODAN (P15582) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 519
Score = 40.8 bits (94), Expect = 0.027
Identities = 61/258 (23%), Positives = 116/258 (44%), Gaps = 29/258 (11%)
Query: 784 VTSLVIRVLLSMIFNLERFLCQDMLLFMKTISLT---LILHPLLLLIGNIFLIFPLYLIL 840
+ SL+I +L N +F+ + L + I L L ++ +LL +I P+ LI
Sbjct: 78 IVSLIIYILFDFSTNQFQFVQDALELSVYNIYLGVDGLSIYFVLLTT----IIMPIALIS 133
Query: 841 ILLSLPVNLQSLMILLLLLHQLYL---LLLLLHLFHLLFPDILPETPLLHLTSKIIFVTI 897
S+ N+++ +I++LLL L L L+L + LF++ F ILP PL L +F +
Sbjct: 134 NWNSITHNIKAYLIIILLLETLLLAVFLVLDVLLFYIFFESILP--PLFILIG--LFGSS 189
Query: 898 FKLRHIIFLIFFPII--IFLTIILLLLCLYIHNLSLNPMLK-------QVNMSVGCMLCK 948
K+R ++ + ++ +FL + +L + I L+ + K Q+ + +G +
Sbjct: 190 NKVRASFYIFLYTLLGSLFLLLSILTMSSLIGTTYLDVLSKSNFEYTTQIFLFLGVFIA- 248
Query: 949 LNFKLLRKLVLGNLWIYHQMLSLLDVDGFTKSNFMLMALLRDIKQ---DWLPKVTIKLRA 1005
F + V N W+ + + +L L I + LPK+++ +
Sbjct: 249 --FAVKTPTVFLNSWLLKAHVESPLGGSIVLAGIVLKLSLYGIFRLILPLLPKISLNYTS 306
Query: 1006 WIILIHILQLLNSQQSDL 1023
I I I+ ++ + S L
Sbjct: 307 IIFSIGIITIIYASFSTL 324
>Y917_AQUAE (O67062) Hypothetical protein AQ_917
Length = 408
Score = 40.4 bits (93), Expect = 0.035
Identities = 100/420 (23%), Positives = 167/420 (38%), Gaps = 90/420 (21%)
Query: 551 LACILILLLIIIKMLVIFAILPSTN--IYLSILVPHMLLLNLNFSI*IFGVLFQLLQFMV 608
+A I LI + + +F + + N YL+ V H+ L S + G LFQ+L +
Sbjct: 17 IARFFITALIFLNLEFLFLLYQAFNKEFYLTPSV-HVFTLGFMAST-MIGALFQMLPVVA 74
Query: 609 IDIFS-PF*MTTPDFSG----SFFLKPKLKCLHMLRILLL*FRIIFTPPLNSLELIMALN 663
+ P T G + FL L + + +L L F +I ++SL L L
Sbjct: 75 GAVIEDPLKKATFVHIGLTLGTLFLVYGLYSFNKVALLGLFFLLISLLYISSLMLYKLLR 134
Query: 664 SCYLL-----FMLHMALFTRNLV*KLPNKMVELKENINTF*MLVELCFISLNFLLPFGLM 718
L F + FT ++ + TF +L FI+LN F L
Sbjct: 135 IKNLRDAPRGFRFALGSFTAGII-------------LATFLVLNLFGFINLNHKYLFDLH 181
Query: 719 LYIMLF--------SS*IEFLHHYFITNHLTSFFIINSLILPFSKF--LVVYVMLPLYIL 768
+ MLF S + + +F+T F S LP + F LV+ V LP + L
Sbjct: 182 MSFMLFGWTATLVASVSFQVIEMFFVTPPYPKFI---SSYLPKTVFTLLVLKVFLPNFSL 238
Query: 769 IEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLL-- 826
I+ V +S+IF + F +LL K I PL+ L
Sbjct: 239 ID--------------------VFISLIFTIYAFFTIKLLLRRKR----KIKDPLISLWY 274
Query: 827 IGNIFLI-----FPL-----YLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLF 876
+ FLI FP YL LI + V L +++ +++++ L+ +HL
Sbjct: 275 VSMTFLIISCVLFPFRENLFYLFLISFGMFV----LSVIMAMMYRIIPFLVWMHLSTKGV 330
Query: 877 P------DILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCLYIHNLS 930
P +++P+ + + ++ I + +IFLIF + T L+ +++N+S
Sbjct: 331 PKAPTMFEVIPQKKMWNN----FYLHIISIFSLIFLIFKLYFLPPTFFLISSLYFLYNIS 386
>NU4M_HANWI (P48917) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 511
Score = 40.0 bits (92), Expect = 0.046
Identities = 48/212 (22%), Positives = 96/212 (44%), Gaps = 17/212 (8%)
Query: 717 LMLYIMLFSS*IEFLHHYFITNHLTSFFIINSLIL------PFSKFLVVYVMLPLYILIE 770
+ L ++++ I +Y N++ F +IN+ I S +L+ ++ L I +
Sbjct: 39 ISLLLIIYFIYIGIYINYLFNNNILGFQLINNYININWGIDGISLWLINLTLILLPISLI 98
Query: 771 PNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNI 830
N N+ S V + V+ +L+ I + F+C D++ F TL+ PL +LIG +
Sbjct: 99 SNWNISKNEDKSKVLTYVLLILIIGIIIILNFICLDLITFYILFEATLL--PLFILIGKL 156
Query: 831 FLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLHLTS 890
+ P ++ +N ++ + +++ L LF LL I +++ +
Sbjct: 157 GSL-PYNGNNKIIIKGINNNNITPREKAAYYIFIYTLFSSLFMLLSIGI-----YIYMIN 210
Query: 891 KIIFVTIFKLRHIIFLIFFPIIIFLTIILLLL 922
I + I+ +II I IIF+ +I+ +L
Sbjct: 211 NIDYNNIY---NIILSIDLQSIIFIGLIIGIL 239
>Y265_BUCAP (P42396) Hypothetical UPF0259 protein BUsg265
Length = 247
Score = 39.7 bits (91), Expect = 0.060
Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 735 FITNHLTSFFIINSLILPFSKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLS 794
F+++H + F +INS+ + K L+ Y + ++ + L L S+ + +T L S
Sbjct: 56 FLSSH-SIFDLINSMSIYEKKELLKYSIFKIFEFLISKTFL-LGSIITLITHLSNHKKES 113
Query: 795 MIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSL-PVNLQSLM 853
+ F+L LC+ F+ ++ + + + IG +F IFP + +LL+L P+ L
Sbjct: 114 IQFSLNS-LCK----FLPSLFILNFITTFFIQIGFMFFIFPGIFLSVLLALSPIILSFKK 168
Query: 854 ILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIF--LIFFPI 911
L+ +L + + HL +I+ + L + K I T+F +II IF +
Sbjct: 169 NNLIDCIRLSISISCKHL------NIVGTSVLFWMCVKFILTTVFSNTYIISKNFIFLIL 222
Query: 912 IIFLTIILLLLCLYI 926
I + I +L +Y+
Sbjct: 223 NINMNIFFSILIVYL 237
>NU2M_ACACA (Q37376) NADH-ubiquinone oxidoreductase chain 2 (EC
1.6.5.3)
Length = 527
Score = 38.1 bits (87), Expect = 0.18
Identities = 96/441 (21%), Positives = 176/441 (39%), Gaps = 94/441 (21%)
Query: 555 LILLLIIIKMLVIFAILPSTNIYLSILVPHMLLLNLNFSI*IFGVLFQLLQFMVIDIFSP 614
+ LL +I L+ F IL + Y S + + + G+ LL F+VI +
Sbjct: 38 IYFLLALITFLIFFVILSNKKNYRSY-----------YYLNVGGIFSNLLPFVVILLLII 86
Query: 615 F*MTTPD----FSGSFFLKPKLKCLHMLRILLL*FRIIFTPPLNSLELIMALNSCYLLFM 670
T D F+G ++ + + I+L+ F +IFT + + +
Sbjct: 87 LNTNTNDSYYLFAGFYYNDAAV--VFFKNIILIGF-LIFTFAIKQYLSYFKYYDFEFILV 143
Query: 671 LHMALFTRNLV*KLPNKMVELKENIN----TF*MLVEL------------------CFIS 708
L ++LF+ L+ N ++ L I TF +LV CF S
Sbjct: 144 LFISLFSSLLILN-SNDLISLFFIIELQSLTFYILVASKQTSSFSTESGLKYFILGCFSS 202
Query: 709 LNFLLPFGLMLY-----IMLFSS*IEFLHHYFITNHLTSFFIINSLILPFSKFLVVYVML 763
++ FG+ L ++ ++ FL ++TN FI++S FS FL+ +++L
Sbjct: 203 --GIILFGISLIYGFTGLLSYTDLTLFLSEVYVTN-----FILDSSFFSFSGFLIGFLLL 255
Query: 764 PLYILIEPNC---NLELESLYS*VTSLVIRVLLSM--------IFNLERFLCQDMLLFMK 812
+ L + ++ + +Y L+ L ++ IF L ++ ++ LF +
Sbjct: 256 TVGFLFKLGSAPFHMWMPDVYEGSPLLITAYLSTLPKISLIFVIFKLYYYVFFEVFLFSQ 315
Query: 813 TISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLF 872
+ L +LL G+I I+ V L+ ++ ++ + YLLL
Sbjct: 316 GLFTLTALFSILL--GSIAAIYQ-----------VKLKRMLTYSMITNTGYLLL------ 356
Query: 873 HLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCLYIHNLSLN 932
L F DI I++TIF L IF++ FL++ L + ++L
Sbjct: 357 GLSFGDISG-----------IYITIFYLISYIFIMIGLFFCFLSLRDRSSGLLVKRINLF 405
Query: 933 PMLKQVNMSVGCMLCKLNFKL 953
L +VN S+ + L F +
Sbjct: 406 SNLLEVNPSLSFSIFILLFSI 426
>NU4M_PETMA (Q35542) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 458
Score = 37.7 bits (86), Expect = 0.23
Identities = 59/285 (20%), Positives = 117/285 (40%), Gaps = 55/285 (19%)
Query: 750 ILPFSKFLVVYVMLPLYIL----IEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQ 805
+L +F +ML ++L + +++ E + T + + +LL ++ + F
Sbjct: 56 LLSIDQFSCPLIMLSCWLLPLTIMGSQAHMKTEPITRQKTMISLLILLQVLLCIT-FGAS 114
Query: 806 DMLLFMKTISLTLILHPLLLLI------------GNIFLIFPLY----LILILLSLPVNL 849
++L+F TLI P LL+I G FL + L L+L L+ + +L
Sbjct: 115 NLLMFYIAFETTLI--PTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLLALIMIQTHL 172
Query: 850 QSLMILLLLLHQLYLLL--------------------LLLHLFHLLFPDILPETPLLHLT 889
SL I ++ L L LLL + L++FHL P E P+
Sbjct: 173 NSLSIYIIPLSNLTLLLNTPWSETLWWIACFLAFLIKMPLYIFHLWLPKAHVEAPI--AG 230
Query: 890 SKIIFVTIFKLRHIIFL----IFFPIIIFLTIILLLLCLYIHNLSLNPMLKQVNMSVGCM 945
S I+ + KL + +F P+ L + +++ ++ ++ + L+Q ++ M
Sbjct: 231 SMILAAILLKLGGYGMIRMSSLFIPLTKDLAVPFMIIAMWGMIVTSSICLRQTDLK--SM 288
Query: 946 LCKLNFKLLRKLVLG----NLWIYHQMLSLLDVDGFTKSNFMLMA 986
+ + + +V G W + L+++ G S + +A
Sbjct: 289 IAYSSVSHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLLCLA 333
>NU2M_HANWI (P48906) NADH-ubiquinone oxidoreductase chain 2 (EC
1.6.5.3)
Length = 567
Score = 37.7 bits (86), Expect = 0.23
Identities = 110/498 (22%), Positives = 205/498 (41%), Gaps = 95/498 (19%)
Query: 106 LRFGLI*KNDSPKLIVFALQI-------YVLTSII*NKD*NLFWIISLK*SPYGRNYLHI 158
+R G+I +I+++L I Y+ + N D N++ L Y N +I
Sbjct: 41 IRIGII-------IILYSLYIFKDISLSYIFNNYNNNNDLNIYIFNDL----YKLNIFNI 89
Query: 159 DISLIVLVFILVVV-LHLKLLRFIEMRIRLCNFLQD*MINFLLLELKFFSLILFLL*TKF 217
I ++L+ I+ ++ ++ L I+++ N N++ L + + S+I+F
Sbjct: 90 YIIFLLLIVIISLLSINTTYLTKIQIKNNNNNISIGKSDNYIELNIYYISIIIF------ 143
Query: 218 IL*LFRKKVIMLLLLL*VYLLIPPFKSMLL----------IIENLKVVAKASLQISLLDS 267
+I L+LLL LI F S+ L II + SL L+
Sbjct: 144 -------NIIGLILLLTSNNLISIFISIELQSYSLYILTGIIPKSQKSGHNSLFYYLIGG 196
Query: 268 VLSVIVQ--IIL*IFVT*NMVITMLTNLHQV*MLLLKKILKMVQCLLLDWVLLQALLLLV 325
+ S+I+ I L ++T N+ I + ++ + I + +L+ W+ + LL+
Sbjct: 197 IGSIIILYGISLLYYITSNIFINNINLIYSL------DIYNINNNILIGWLFIIIGLLIK 250
Query: 326 FLKSN*LNLCPCYNNQIWLFQHLLLHKLPPITLHLPAFPLQILLKVYLLLFLL*QVNLLF 385
+ P YN I L+ + I+L L +L + L L+ L +N LF
Sbjct: 251 ------IGAAPMYNWSILLYSNSNTIITSYISLIPKISILSYILLIILNLYNLNNLNNLF 304
Query: 386 G*-----LIMVLMNIYVVILL-----HLVPFIE*NLFMFPYPMVTLC*LILLVMSLSIPS 435
LI +L I ++ L+ L N+ + ++ + +L+++SL +
Sbjct: 305 NNNNNNNLIYILSIIIILSLIIGSIGGLTQIKIKNILAYS-GLLNIGYFLLIILSLINNN 363
Query: 436 FI*VMFFIHLILPSISSL*QNVVIH*LVSFIFLLKNVLYRTNNL*R*LVWLNRKMVYTSF 495
I + IL I + Q H + FI L+ ++Y N Y +F
Sbjct: 364 NI------NSILAYIIYITQYCFNH-ISIFILLIIAIIYNNN--------------YNNF 402
Query: 496 IHHANLLILSFLLYLKVLVMLFLFPIVIRIVNMYLTMP-----YGTLDLVICLIKDFI*C 550
I + NL+ + L Y+K +L +I I+ ++ +P YG L+I I
Sbjct: 403 ITNKNLIYIYELNYIK--NNRYLIFCLIIIIGSFIGIPPLFGFYGKYYLLISSINSNYLF 460
Query: 551 LACILILLLIIIKMLVIF 568
L+ +LI+ II + ++
Sbjct: 461 LSLLLIISSIISSIYYLY 478
>ATP6_APILI (Q00275) ATP synthase a chain (EC 3.6.3.14) (ATPase
protein 6)
Length = 226
Score = 37.7 bits (86), Expect = 0.23
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Query: 710 NFLLPFGLMLYIMLFSS*IEFLHHYFITNHLTSFFIINSLILPFSKFLVVYVMLPLYILI 769
N ++ LMLYIM+ + + + +T+HL I+ SL L FS ++Y++ YI+
Sbjct: 72 NIIIFISLMLYIMITNIFSLIPYVFTLTSHLLLNMIL-SLTLWFS--FLIYLIYNNYIMF 128
Query: 770 EPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGN 829
+ L L S V + V++ +I + R + L IS LIL L + I N
Sbjct: 129 LSH----LVPLNSPVFLMNFMVIIELISLIIRPWTLSIRLSANLISGHLILTLLGIFISN 184
Query: 830 IFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLF 872
I P+ L++ + L + + MI Q Y+ +LL L+
Sbjct: 185 FISILPINLMIQNMLLTLEIFMSMI------QSYVFSILLILY 221
Score = 37.4 bits (85), Expect = 0.30
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 338 YNNQIWLFQHLLLHKLPPITLHLPAFPLQILLKVYLLLFLL*QVNLLFG*LIMVLMNIYV 397
Y + I +F L+L+ + IT P L +LLL ++ + L F LI ++ N Y+
Sbjct: 69 YQSNIIIFISLMLYIM--ITNIFSLIPYVFTLTSHLLLNMILSLTLWFSFLIYLIYNNYI 126
Query: 398 VILLHLVPFIE*NLFMFPYPMVTLC*LILLVMSLSI 433
+ L HLVP M ++ L LI+ +LSI
Sbjct: 127 MFLSHLVPLNSPVFLMNFMVIIELISLIIRPWTLSI 162
>NU4M_MOUSE (P03911) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 459
Score = 37.4 bits (85), Expect = 0.30
Identities = 63/276 (22%), Positives = 114/276 (40%), Gaps = 46/276 (16%)
Query: 752 PFSKFLVVYV--MLPLYILIEPNC----NLELESLYS*VTSLV-IRVLLSMIFNLERFLC 804
P S L++ +LPL ++ N N L+ LY ++ L+ +++LL M F+ L
Sbjct: 60 PLSTPLIILTAWLLPLMLMASQNHLKKDNNVLQKLY--ISMLISLQILLIMTFSATE-LI 116
Query: 805 QDMLLFMKTISLTLIL-----HPLLLLIGNIFLIF-------PLYLILILLSLPVNLQSL 852
+LF T+ TLI+ + L I+ +F PL + LIL+ V +L
Sbjct: 117 MFYILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALILIQNHVGTLNL 176
Query: 853 MILLLLLHQL----------------YLLLLLLHLFHLLFPDILPETPLLHLTSKIIFVT 896
MIL H L +L+ + L+ HL P E P+ S I+
Sbjct: 177 MILSFTTHTLDASWSNNLLWLACMMAFLIKMPLYGVHLWLPKAHVEAPI--AGSMILAAI 234
Query: 897 IFKLRHI----IFLIFFPIIIFLTIILLLLCLYIHNLSLNPMLKQVNMSVGCMLCKLNFK 952
+ KL I +I P+ ++ +LL L+ ++ + L+Q ++ ++
Sbjct: 235 LLKLGSYGMIRISIILDPLTKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294
Query: 953 --LLRKLVLGNLWIYHQMLSLLDVDGFTKSNFMLMA 986
++ +++ W + L+ G T S +A
Sbjct: 295 ALVIASIMIQTPWSFMGATMLMIAHGLTSSLLFCLA 330
>NU4M_YARLI (Q9B6D6) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 486
Score = 37.0 bits (84), Expect = 0.39
Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 55/300 (18%)
Query: 672 HMALFTRNLV*KLPNKMVELKENINTF*MLVELCFISLNFLLPFGL-------------- 717
H LF NL+ +V L N NTF + F N L PFGL
Sbjct: 26 HFYLFASNLLLLF---IVVLYINFNTFSNSFQFNFELFNSLNPFGLSNSDISNGLLFGID 82
Query: 718 -------MLYIMLFSS*IEFLHHYFITNHLTSFF-----------IINSLILPFSKFLVV 759
+L ++L + L +++ N ++ + ++N L + F ++
Sbjct: 83 GLSLTFILLTVLLIP--LTLLGNWYNINFNSNLYYTLVLAIGLVILLNFWALDYISFYIL 140
Query: 760 Y-VMLP-LYILIEPNCNLELE---------SLYS*VTSLVIRVLLSMIFNLERFLCQDML 808
+ LP L+ILI + + E +L + L+ V++S++ N F+ +
Sbjct: 141 FEATLPLLFILIHIYGSSDSERASFYVLMFTLSGSLFMLLSIVVISIVLNTTNFINHN-- 198
Query: 809 LFMKTISL-TLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLL 867
LF+ ++ L T+I L + I +FP+++ L ++ L MIL L+ +L L +
Sbjct: 199 LFVLSLDLQTIIWLGLFIAIMVKTPLFPIHVWLPVVHSESPLAGSMILAGLILKLALYAI 258
Query: 868 LLHLFHLLFPDILPETPLLHLTS--KIIFVTIFKLRHIIF--LIFFPIIIFLTIILLLLC 923
L L LL + TP++++ S II ++ LR I +I + I + I +L +C
Sbjct: 259 LRLLLPLLCEAQILYTPMIYIISLLTIILTSLATLRQIDLKVIIAYSSISHMGIAILGVC 318
>COX3_APILI (P34843) Cytochrome c oxidase polypeptide III (EC
1.9.3.1)
Length = 259
Score = 36.6 bits (83), Expect = 0.51
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 745 IINSLILPFSKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNL----- 799
++NS IL S F V + Y++I NL+L Y L++ +LL + F +
Sbjct: 130 LLNSFILVSSGFTVT--LSHYYLIIN---NLKLSKSY-----LLLTILLGIYFTILQTIE 179
Query: 800 --ERFLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLL 857
F C + ++ + H L +LIG+IFL+ LY ++ + ++ + + +
Sbjct: 180 YSNSFFCFNDSIYGSIFFMATGFHGLHVLIGSIFLLISLYRMMNIHFSNMHNMNFELAIW 239
Query: 858 LLHQLYLLLLLLHLF 872
H + ++ L L+ F
Sbjct: 240 YWHFVDVIWLFLYTF 254
>Y048_UREPA (Q9PR97) Hypothetical protein UU048
Length = 496
Score = 36.2 bits (82), Expect = 0.67
Identities = 39/189 (20%), Positives = 88/189 (45%), Gaps = 22/189 (11%)
Query: 662 LNSCYLLFMLHMALFTRNLV*KL----PNKMVELKENINTF*MLVELCFISLNFLLPFGL 717
L++ LLF + + +F N + L NK + + +++N F L ++ LNFL+ F
Sbjct: 38 LSAITLLFFILLLIFAENTLFGLGFGDENKSMMISKSLNAFFDLHSPKYLQLNFLIVFRF 97
Query: 718 MLYIMLFSS*IEFLHHYFITNHLTSFFIINSLILPFSKFLVVYVMLPL--YILIEPNCNL 775
+ + F Y + + T+ + + I + + V+Y+++ ++L ++
Sbjct: 98 FI--------LSFTLFYTLIKNFTNLYWHRATIKKYLPWFVLYLVIATISFLLFFTFFSV 149
Query: 776 ELESLYS*VTSLVIRVLLSMIFNLERFLCQ---DMLLF--MKTISLTLILHPLLLLIGNI 830
+ +++ V L++ LL++ + + + + LL+ K + + ++ LLLL
Sbjct: 150 WPKEVFNLVFLLLVLFLLNLSYEIFNYFISKKTNPLLYDNYKNLIIAMVFQALLLL---F 206
Query: 831 FLIFPLYLI 839
+I PL I
Sbjct: 207 VIITPLVWI 215
>CBSB_SULSO (P58030) Cytochrome b558/566 subunit B
Length = 314
Score = 36.2 bits (82), Expect = 0.67
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 791 VLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNI-FLIFPLYLILILLSLPVNL 849
++L IF+ +F + +F + L + LLL+IGNI F F ++L+++ + L +
Sbjct: 15 LILLGIFSFLQFSFKQSFMFPSILPLNIPDSNLLLVIGNISFYFFFVFLLIVSMILSLTY 74
Query: 850 QSLMILLL------------------LLHQLYLLLLLLHLFHLLFPDILPETPLLHLTSK 891
+SL+ L + LL+ L + +L+L L + I + L
Sbjct: 75 KSLIPLTIILTISPFITLIPNYENSFLLYSLEIAILILGLASTIEGLIKSSLLSILLIPT 134
Query: 892 IIFVTIFKLRHIIFLIFFP--IIIFLTIILLLLCLYIHNL----SLNPMLKQVNMSVGCM 945
++ V + I+ IF I +LTI L+ + Y+ + + + + +SVG +
Sbjct: 135 LVLVNLGIYASILLNIFHNALFISYLTIYLISIAGYLAYVISWGKIKSLRNYIAISVG-L 193
Query: 946 LCKLNFKLLRKLVLGNLWI 964
L + F ++ N ++
Sbjct: 194 LSMIPFIFFENIISHNRYL 212
>YMN4_PODAN (P15564) Hypothetical 50.9 kDa protein in ND4 intron 1
Length = 449
Score = 35.8 bits (81), Expect = 0.87
Identities = 38/132 (28%), Positives = 67/132 (49%), Gaps = 14/132 (10%)
Query: 784 VTSLVIRVLLSMIFNLERFLCQDMLLFMKTISLT---LILHPLLLLIGNIFLIFPLYLIL 840
+ SL+I +L N +F+ + L + I L L ++ +LL +I P+ LI
Sbjct: 78 IVSLIIYILFDFSTNQFQFVQDALELSVYNIYLGVDGLSIYFVLLTT----IIMPIALIS 133
Query: 841 ILLSLPVNLQSLMILLLLLHQLYL---LLLLLHLFHLLFPDILPETPLLHLTSKIIFVTI 897
S+ N+++ +I++LLL L L L+L + LF++ F ILP PL L +F +
Sbjct: 134 NWNSITHNIKAYLIIILLLETLLLAVFLVLDVLLFYIFFESILP--PLFILIG--LFGSS 189
Query: 898 FKLRHIIFLIFF 909
K+R ++ +
Sbjct: 190 NKVRASFYIFLY 201
>Y421_METTH (O26521) Hypothetical protein MTH421
Length = 385
Score = 35.8 bits (81), Expect = 0.87
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 19/120 (15%)
Query: 745 IINSLILPFSKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLC 804
IINS IL FL+VYV +Y + +E L TS+V+ ++++ L FL
Sbjct: 127 IINS-ILALLPFLLVYVFFIIYTSRRHLMDEFMEPLRQYRTSMVLALVITSAVTL-TFLI 184
Query: 805 QDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLS-LPVNLQSLMILLLLLHQLY 863
D L F + I L+LIL +YL+ +++S LP ++++++ +++++ LY
Sbjct: 185 TDFLPF-QIIVLSLIL---------------VYLLTMVISRLPPRIKAVIVSVIIVYSLY 228
>CYB_TRYBO (Q33568) Cytochrome b
Length = 372
Score = 35.8 bits (81), Expect = 0.87
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 824 LLLIGNIFLIFPLYL---ILILLSLPVNL-QSLMILLLLLHQLYLLLLLLHL-------- 871
LLL G++F ++ L ++I L + V + S ++ Q ++ LL+HL
Sbjct: 20 LLLSGDLFRVYGLGFNLGVMIALQILVGICLSWFFFRCIIPQNWIFTLLIHLEFDLGFII 79
Query: 872 --FHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLL 921
H++F +L +H+ I IF +++ F I IF+ II +
Sbjct: 80 RSLHIIFTSLLYFLLYIHIIKVIFLCLIFDSSMLVWFFGFLIFIFILIIAFI 131
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.356 0.163 0.531
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,931,933
Number of Sequences: 164201
Number of extensions: 4874996
Number of successful extensions: 28422
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 28243
Number of HSP's gapped (non-prelim): 220
length of query: 1439
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1316
effective length of database: 39,777,331
effective search space: 52346967596
effective search space used: 52346967596
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 72 (32.3 bits)
Medicago: description of AC140721.3