BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140670.5 + phase: 0 /pseudo/partial
(181 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RL13_THEMA (Q9X1G5) 50S ribosomal protein L13 91 2e-18
RL13_AQUAE (O67722) 50S ribosomal protein L13 86 4e-17
RL13_HAEIN (P44387) 50S ribosomal protein L13 85 8e-17
RL13_BACSU (P70974) 50S ribosomal protein L13 85 1e-16
RL13_SYNY3 (P73294) 50S ribosomal protein L13 84 2e-16
RL13_STACA (Q00990) 50S ribosomal protein L13 83 4e-16
RL13_HAESO (P31781) 50S ribosomal protein L13 83 4e-16
RL13_ECOLI (P02410) 50S ribosomal protein L13 80 2e-15
RL13_BUCBP (Q89AE6) 50S ribosomal protein L13 80 3e-15
RK13_PORPU (P51292) Chloroplast 50S ribosomal protein L13 76 5e-14
RL13_RICPR (Q9ZDU1) 50S ribosomal protein L13 75 8e-14
RL13_MYCLE (P38014) 50S ribosomal protein L13 74 1e-13
RL13_MYCTU (P66065) 50S ribosomal protein L13 74 2e-13
RL13_STRCO (Q53874) 50S ribosomal protein L13 74 2e-13
RL13_DEIRA (Q9RXY1) 50S ribosomal protein L13 74 2e-13
RL13_HELPJ (Q9ZMY6) 50S ribosomal protein L13 73 4e-13
RL13_HELPY (P56038) 50S ribosomal protein L13 72 9e-13
RL13_BUCAP (Q8K9F9) 50S ribosomal protein L13 71 2e-12
RL13_TREPA (O83988) 50S ribosomal protein L13 70 3e-12
RL13_BUCAI (P57471) 50S ribosomal protein L13 70 3e-12
>RL13_THEMA (Q9X1G5) 50S ribosomal protein L13
Length = 149
Score = 90.5 bits (223), Expect = 2e-18
Identities = 51/127 (40%), Positives = 75/127 (58%), Gaps = 10/127 (7%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA G++LGRLA++IA ++MGK KP YTP+ D GD IV+NA + +TG+KL KV
Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKV 80
Query: 75 YYWHTG-----KEL*R----IRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHPF 125
YYWH+G K L + P+ L L K +K ++ ++L+++ EHP
Sbjct: 81 YYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKML-KRLKVYASPEHPH 139
Query: 126 GDRPLEP 132
+ EP
Sbjct: 140 QAQKPEP 146
>RL13_AQUAE (O67722) 50S ribosomal protein L13
Length = 144
Score = 86.3 bits (212), Expect = 4e-17
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA G+ LGRLAS+IA ++ GK KP Y P+ D GD IV+NA+ I VTG+KL K
Sbjct: 14 KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKK 73
Query: 75 YYWHT----GKEL*RIRW-----PKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHPF 125
YYWH+ G + ++W P+ + L K + + M +KL+++ G EHP
Sbjct: 74 YYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLP-KNRLGHRMLKKLKVYRGPEHPH 132
Query: 126 GDRPLEP 132
+ +P
Sbjct: 133 QAQKPQP 139
>RL13_HAEIN (P44387) 50S ribosomal protein L13
Length = 142
Score = 85.1 bits (209), Expect = 8e-17
Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 12/118 (10%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DA G+ LGRLA+++A + GK K YTP+ D GD IV+NA +AVTGRK TDK+Y
Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLY 74
Query: 76 YWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEH 123
YWHTG KE+ R +++ + M RKL+++ G EH
Sbjct: 75 YWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPK--GPLGRAMFRKLKVYAGGEH 130
>RL13_BACSU (P70974) 50S ribosomal protein L13
Length = 145
Score = 84.7 bits (208), Expect = 1e-16
Identities = 51/126 (40%), Positives = 72/126 (56%), Gaps = 12/126 (9%)
Query: 18 VFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVYYW 77
V DA G+ LGRL+S++A ++ GK KPTYTP+ D GD I++NA+ I +TG+KLTDK+YY
Sbjct: 18 VVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYR 77
Query: 78 HT----------GKEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHPFGD 127
HT E+ R +P+ + L K M +KL ++ GSEHP
Sbjct: 78 HTQHPGGLKSRTALEM-RTNYPEKMLELAIKGMLP-KGSLGRQMFKKLNVYRGSEHPHEA 135
Query: 128 RPLEPY 133
+ E Y
Sbjct: 136 QKPEVY 141
>RL13_SYNY3 (P73294) 50S ribosomal protein L13
Length = 151
Score = 83.6 bits (205), Expect = 2e-16
Identities = 50/141 (35%), Positives = 75/141 (52%), Gaps = 32/141 (22%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+GQ LGRLA+++AT++ GK+KPT+TP+ D GD I++NA+ I VTGRK K+
Sbjct: 15 KWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKL 74
Query: 75 YYWHTGK---------EL*RIRWPKTL-----------QMLFAKLFCA*FQKTTYVMDRK 114
Y H+G+ E ++R P+ + L KLF K
Sbjct: 75 YRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSLGRKLF------------TK 122
Query: 115 LRIFPGSEHPFGDRPLEPYVM 135
L+++ G HP + E V+
Sbjct: 123 LKVYAGPSHPHAAQQPETLVI 143
>RL13_STACA (Q00990) 50S ribosomal protein L13
Length = 145
Score = 82.8 bits (203), Expect = 4e-16
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA GQ LGRL+S++A+++ GK K TYTP+ D GD I++NA I +TG+K +DKV
Sbjct: 15 KWYVIDAAGQTLGRLSSEVASILRGKHKATYTPHVDSGDYVIIINAGQIEMTGKKASDKV 74
Query: 75 YYWH----------TGKEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHP 124
YY H T EL R + P+ L + K + +KL ++ G+EHP
Sbjct: 75 YYRHSNYPGGIKSITAGEL-REKNPERLLEISIKGMLP-SSRLGEKQGKKLFVYGGAEHP 132
Query: 125 FGDRPLEPY 133
+ E Y
Sbjct: 133 HAAQQPENY 141
>RL13_HAESO (P31781) 50S ribosomal protein L13
Length = 142
Score = 82.8 bits (203), Expect = 4e-16
Identities = 47/118 (39%), Positives = 65/118 (54%), Gaps = 12/118 (10%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DA G+ LGRL ++A + GK K YTP+ D GD +V+NA+ +AVTG K TDK+Y
Sbjct: 15 WYVVDATGKTLGRLGHELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLY 74
Query: 76 YWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEH 123
YWHTG KE+ R +++ + M RKL+++ GSEH
Sbjct: 75 YWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPK--GPLGRAMFRKLKVYAGSEH 130
>RL13_ECOLI (P02410) 50S ribosomal protein L13
Length = 142
Score = 80.5 bits (197), Expect = 2e-15
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 12/118 (10%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DA G+ LGRLA+++A + GK K YTP+ D GD IVLNA +AVTG K TDKVY
Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVY 74
Query: 76 YWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEH 123
Y HTG +E+ R + +++ + M RKL+++ G+EH
Sbjct: 75 YHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPK--GPLGRAMFRKLKVYAGNEH 130
>RL13_BUCBP (Q89AE6) 50S ribosomal protein L13
Length = 144
Score = 80.1 bits (196), Expect = 3e-15
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W DA G+ILGRLA+ IA+ + GK K YTP+ D GD IV+NAK+I VTG+K TDK Y
Sbjct: 17 WYCIDATGKILGRLATNIASRLRGKHKVEYTPHVDIGDYLIVINAKNIKVTGKKCTDKFY 76
Query: 76 YWHTG 80
Y HTG
Sbjct: 77 YHHTG 81
>RK13_PORPU (P51292) Chloroplast 50S ribosomal protein L13
Length = 142
Score = 75.9 bits (185), Expect = 5e-14
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DAK Q LGR+++ I+ ++ GK+KP+YTP D GD IV+N+ +++V+G K T K+Y
Sbjct: 15 WYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTTQKLY 74
Query: 76 YWHTGKEL*RIRWPKTLQMLFAKLFCA*FQKTTYVM----------DRKLRIFPGSEHPF 125
H+G+ +T + L +L +K+ M KL+++PG HP
Sbjct: 75 RRHSGQP--GGLKVETFEQLQTRLPNRIVEKSVKGMLPKGPLGRKLFTKLKVYPGPSHPH 132
Query: 126 GDRPLEPYVM 135
+ + Y++
Sbjct: 133 AAQKPQEYMV 142
>RL13_RICPR (Q9ZDU1) 50S ribosomal protein L13
Length = 155
Score = 75.1 bits (183), Expect = 8e-14
Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLT--- 71
+W V DAK +LGRLAS++A ++ GK KP++TP+ D GD I++NA+ I +TG+KL
Sbjct: 14 KWWVIDAKNVVLGRLASRVAIMLRGKHKPSFTPHLDCGDNIIIINAEHIKLTGKKLNPKD 73
Query: 72 DKVYYWHTG 80
KVYY HTG
Sbjct: 74 GKVYYRHTG 82
>RL13_MYCLE (P38014) 50S ribosomal protein L13
Length = 147
Score = 74.3 bits (181), Expect = 1e-13
Identities = 43/128 (33%), Positives = 67/128 (51%), Gaps = 12/128 (9%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DA +LGRLA+ AT++ GK KPT+ PN D GD IV+NA +A++G K+ K+
Sbjct: 15 WYVIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMV 74
Query: 76 YWHTGK----------EL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHPF 125
Y H+G EL + + ++ + K + + RKLR++ G +HP
Sbjct: 75 YRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPK--NKLSRQIQRKLRVYAGPDHPH 132
Query: 126 GDRPLEPY 133
+ P+
Sbjct: 133 SAQQPVPF 140
>RL13_MYCTU (P66065) 50S ribosomal protein L13
Length = 147
Score = 73.9 bits (180), Expect = 2e-13
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DA +LGRLA A ++ GK KPT+ PN D GD IV+NA +A++G KL K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMV 74
Query: 76 YWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHPF 125
Y H+G EL + + ++ + + + + RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPK--NRLSRQIQRKLRVYAGPEHPH 132
Query: 126 GDRPLEPY 133
+ PY
Sbjct: 133 SAQQPVPY 140
>RL13_STRCO (Q53874) 50S ribosomal protein L13
Length = 147
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+ +LGRLA+ A+++ GK KP Y P+ D GD I++NA + ++G K T K+
Sbjct: 14 QWHVIDAQDVVLGRLATTAASILRGKHKPIYAPHVDTGDFVIIINADKVHLSGNKRTQKM 73
Query: 75 YYWHTGKE--L*RIRWPKTL----QMLFAKLFCA*FQKTTY--VMDRKLRIFPGSEHPFG 126
Y H+G L +R+ + L + K K + M KL+++ G +HP G
Sbjct: 74 AYRHSGYPGGLRSVRYDELLDKNPEKAVEKAIKGMLPKNSLGRQMLSKLKVYKGDQHPHG 133
Query: 127 DRPLEPY 133
+ +P+
Sbjct: 134 AQQPQPF 140
>RL13_DEIRA (Q9RXY1) 50S ribosomal protein L13
Length = 174
Score = 73.6 bits (179), Expect = 2e-13
Identities = 36/71 (50%), Positives = 47/71 (65%)
Query: 10 KLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRK 69
K D W V DA G LGRLA+ IA+ + GK +P +TPN GD +V+NA +A+TG+K
Sbjct: 35 KNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKK 94
Query: 70 LTDKVYYWHTG 80
L DKVY +TG
Sbjct: 95 LDDKVYTRYTG 105
>RL13_HELPJ (Q9ZMY6) 50S ribosomal protein L13
Length = 141
Score = 72.8 bits (177), Expect = 4e-13
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DAK ++ GRL ++IA ++ GK +P YTPN D GD +V+NA + +G KL DK Y
Sbjct: 14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEY 73
Query: 76 YWHTG------KEL*RIRWPKTLQMLFAKLFCA*FQKTTY--VMDRKLRIFPGSEHP 124
+ H+G + + KT + L+ KT M +KL+++ +HP
Sbjct: 74 FTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130
>RL13_HELPY (P56038) 50S ribosomal protein L13
Length = 141
Score = 71.6 bits (174), Expect = 9e-13
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DAK ++ GRL ++IA ++ GK +P YTPN D GD +V+NA + +G KL DK Y
Sbjct: 14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEY 73
Query: 76 YWHTG 80
+ H+G
Sbjct: 74 FTHSG 78
>RL13_BUCAP (Q8K9F9) 50S ribosomal protein L13
Length = 142
Score = 70.9 bits (172), Expect = 2e-12
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 9 IKLDGLR--WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVT 66
+KL+ ++ W DA +ILGR AS I+ + GK K YTP+ D GD IVLNA I VT
Sbjct: 6 LKLNDIKRNWFYVDATNKILGRFASAISIRLRGKHKIEYTPHLDTGDYIIVLNASKILVT 65
Query: 67 GRKLTDKVYYWHTG 80
G+K +KVYY HTG
Sbjct: 66 GQKKINKVYYHHTG 79
>RL13_TREPA (O83988) 50S ribosomal protein L13
Length = 142
Score = 70.1 bits (170), Expect = 3e-12
Identities = 29/65 (44%), Positives = 48/65 (73%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W + DA G+ LGR+A+++A ++ GK K +YTPN++ GD +V+NA+ + ++G K DK+Y
Sbjct: 15 WHLIDAAGRPLGRVAARVACLLRGKHKASYTPNQEMGDYVVVINAEKVFLSGTKPKDKMY 74
Query: 76 YWHTG 80
Y H+G
Sbjct: 75 YRHSG 79
>RL13_BUCAI (P57471) 50S ribosomal protein L13
Length = 142
Score = 70.1 bits (170), Expect = 3e-12
Identities = 34/65 (52%), Positives = 42/65 (64%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W DA +ILGRLAS ++ + GK K YTP+ D GD IV+NA I VTG K +K+Y
Sbjct: 15 WYYVDATNKILGRLASALSFHLRGKHKTEYTPHLDTGDYIIVINASKILVTGNKRINKIY 74
Query: 76 YWHTG 80
Y HTG
Sbjct: 75 YHHTG 79
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.327 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,943,364
Number of Sequences: 164201
Number of extensions: 777060
Number of successful extensions: 5140
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4938
Number of HSP's gapped (non-prelim): 144
length of query: 181
length of database: 59,974,054
effective HSP length: 103
effective length of query: 78
effective length of database: 43,061,351
effective search space: 3358785378
effective search space used: 3358785378
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140670.5