BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.10 - phase: 0
(184 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YPT2_MAIZE (Q05737) GTP-binding protein YPTM2 251 9e-67
ARA5_ARATH (P28188) Ras-related protein ARA-5 245 4e-65
RIC1_ORYSA (P40392) Ras-related protein RIC1 241 5e-64
YPT1_MAIZE (P16976) GTP-binding protein YPTM1 240 2e-63
YPT1_CHLRE (Q39571) GTP-binding protein YPTC1 236 3e-62
YPT1_VOLCA (P31584) GTP-binding protein yptV1 233 2e-61
RB1A_RAT (Q6NYB7) Ras-related protein Rab-1A 231 7e-61
RB1A_MOUSE (P62821) Ras-related protein Rab-1A (YPT1-related pro... 231 7e-61
RB1A_HUMAN (P62820) Ras-related protein Rab-1A (YPT1-related pro... 231 7e-61
RB1A_CANFA (P62822) Ras-related protein Rab-1A 231 7e-61
RAB1_DISOM (P22125) Ras-related protein ORAB-1 231 7e-61
RAB1_LYMST (Q05974) Ras-related protein Rab-1A 224 9e-59
YPT1_SCHPO (P11620) Ras-related protein ypt1 223 3e-58
YPT1_NEUCR (P33723) GTP-binding protein ypt1 220 2e-57
YPT1_PHYIN (Q01890) Ras-like GTP-binding protein YPT1 218 8e-57
RB1B_RAT (P10536) Ras-related protein Rab-1B 216 2e-56
RB1B_MOUSE (Q9D1G1) Ras-related protein Rab-1B 216 2e-56
RB1B_HUMAN (Q9H0U4) Ras-related protein Rab-1B 216 2e-56
RB1B_DICDI (P34140) Ras-related protein Rab1B (Fragment) 204 1e-52
YPT1_YEAST (P01123) GTP-binding protein YPT1 (Protein YP2) 202 3e-52
>YPT2_MAIZE (Q05737) GTP-binding protein YPTM2
Length = 203
Score = 251 bits (640), Expect = 9e-67
Identities = 129/196 (65%), Positives = 153/196 (77%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T NK+V T TAKAFADE+GIPF+ETSAK++ NV+QAF+ MAA IK++M SQP + +
Sbjct: 126 TANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPA 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q T+CC
Sbjct: 186 TVQIRGQPVNQKTSCC 201
>ARA5_ARATH (P28188) Ras-related protein ARA-5
Length = 258
Score = 245 bits (626), Expect = 4e-65
Identities = 125/196 (63%), Positives = 149/196 (75%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRF+DDSY ++YISTIGVDF K ++
Sbjct: 61 DYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 120
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 121 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 180
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T+N+ + TAKAFADE+GIPF+ETSAKD+ NVEQAF+ M+A IK +M SQP G+ +
Sbjct: 181 TENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPP 240
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q CC
Sbjct: 241 TVQIRGQPVAQKNGCC 256
>RIC1_ORYSA (P40392) Ras-related protein RIC1
Length = 202
Score = 241 bits (616), Expect = 5e-64
Identities = 125/196 (63%), Positives = 148/196 (74%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+N++V KA ADE+GIPFLETSAKD+ NVE+AF+TMA EIKN+M SQ + S
Sbjct: 126 AENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQGRTNASKPA 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQM QP+ Q ++CC
Sbjct: 186 TVQMPRQPVAQQSSCC 201
>YPT1_MAIZE (P16976) GTP-binding protein YPTM1
Length = 208
Score = 240 bits (612), Expect = 2e-63
Identities = 130/201 (64%), Positives = 150/201 (73%), Gaps = 23/201 (11%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSC LLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYD+TD+ESFNNVKQWL EIDRYAN SV KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEI-KNKMGSQPTGSKSAA 166
+N+ V T A+A+A E+GIPFLETSAK+SINVE+AFL M+A I K+K GSQ + +
Sbjct: 126 AENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPS 185
Query: 167 ESVQMKGQPIQQ----NTNCC 183
VQMKG+PIQQ ++ CC
Sbjct: 186 NVVQMKGRPIQQEQQKSSRCC 206
>YPT1_CHLRE (Q39571) GTP-binding protein YPTC1
Length = 203
Score = 236 bits (601), Expect = 3e-62
Identities = 126/198 (63%), Positives = 149/198 (74%), Gaps = 21/198 (10%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K + L
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTVELDGKVIKLQIWDT 64
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSD 124
Query: 107 LTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAA 166
LT K+V AKAFADE+GIPFLETSAK++ NVEQAF+TMAAEIKN+M SQP +K+
Sbjct: 125 LTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGG 184
Query: 167 ESVQ-MKGQPIQQNTNCC 183
V+ +G+PI ++ C
Sbjct: 185 PVVRPQEGKPINSKSSSC 202
>YPT1_VOLCA (P31584) GTP-binding protein yptV1
Length = 203
Score = 233 bits (593), Expect = 2e-61
Identities = 126/198 (63%), Positives = 146/198 (73%), Gaps = 21/198 (10%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K + L
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTVELDGKVIKLQIWDT 64
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSD 124
Query: 107 LTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAA 166
LT K+V AKAFADE+GIPFLETSAK++ NVEQAF+TMAAEIKN+M SQP K
Sbjct: 125 LTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGG 184
Query: 167 ESVQ-MKGQPIQQNTNCC 183
V+ +G+PI ++ C
Sbjct: 185 PVVRPTEGKPINNKSSSC 202
>RB1A_RAT (Q6NYB7) Ras-related protein Rab-1A
Length = 205
Score = 231 bits (589), Expect = 7e-61
Identities = 121/196 (61%), Positives = 145/196 (73%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LGIPFLETSAK++ NVEQ+F+TMAAEIK +MG T +
Sbjct: 129 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKS 188
Query: 168 SVQMKGQPIQQNTNCC 183
+V+++ P++Q+ C
Sbjct: 189 NVKIQSTPVKQSGGGC 204
>RB1A_MOUSE (P62821) Ras-related protein Rab-1A (YPT1-related
protein)
Length = 205
Score = 231 bits (589), Expect = 7e-61
Identities = 121/196 (61%), Positives = 145/196 (73%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LGIPFLETSAK++ NVEQ+F+TMAAEIK +MG T +
Sbjct: 129 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKS 188
Query: 168 SVQMKGQPIQQNTNCC 183
+V+++ P++Q+ C
Sbjct: 189 NVKIQSTPVKQSGGGC 204
>RB1A_HUMAN (P62820) Ras-related protein Rab-1A (YPT1-related
protein)
Length = 205
Score = 231 bits (589), Expect = 7e-61
Identities = 121/196 (61%), Positives = 145/196 (73%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LGIPFLETSAK++ NVEQ+F+TMAAEIK +MG T +
Sbjct: 129 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKS 188
Query: 168 SVQMKGQPIQQNTNCC 183
+V+++ P++Q+ C
Sbjct: 189 NVKIQSTPVKQSGGGC 204
>RB1A_CANFA (P62822) Ras-related protein Rab-1A
Length = 205
Score = 231 bits (589), Expect = 7e-61
Identities = 121/196 (61%), Positives = 145/196 (73%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LGIPFLETSAK++ NVEQ+F+TMAAEIK +MG T +
Sbjct: 129 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKS 188
Query: 168 SVQMKGQPIQQNTNCC 183
+V+++ P++Q+ C
Sbjct: 189 NVKIQSTPVKQSGGGC 204
>RAB1_DISOM (P22125) Ras-related protein ORAB-1
Length = 202
Score = 231 bits (589), Expect = 7e-61
Identities = 122/196 (62%), Positives = 143/196 (72%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LGIPFLETSAK++ NVEQAF+TMAAEIK +MG T S
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKS 185
Query: 168 SVQMKGQPIQQNTNCC 183
+V ++ P++ + C
Sbjct: 186 NVNIQSTPVKSSGGGC 201
>RAB1_LYMST (Q05974) Ras-related protein Rab-1A
Length = 205
Score = 224 bits (571), Expect = 9e-59
Identities = 121/196 (61%), Positives = 139/196 (70%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL 128
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK +AD+LGIPFLETSAK++ NVEQAF+TMAAEIKN+MG S S
Sbjct: 129 TTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPS 188
Query: 168 SVQMKGQPIQQNTNCC 183
P+ N C
Sbjct: 189 VKINSSTPVSANKGGC 204
>YPT1_SCHPO (P11620) Ras-related protein ypt1
Length = 203
Score = 223 bits (567), Expect = 3e-58
Identities = 121/198 (61%), Positives = 143/198 (72%), Gaps = 20/198 (10%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD +SFNNVKQWL EIDRYA V++LLVGNK D+
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDM 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
D K+V AK FAD L IPFLETSAKDS NVEQAFLTM+ +IK +MG+ S +A
Sbjct: 126 VDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKS 185
Query: 168 SVQM-KGQPI-QQNTNCC 183
SV++ +G + Q ++NCC
Sbjct: 186 SVKVGQGTNVSQSSSNCC 203
>YPT1_NEUCR (P33723) GTP-binding protein ypt1
Length = 203
Score = 220 bits (560), Expect = 2e-57
Identities = 118/198 (59%), Positives = 139/198 (69%), Gaps = 20/198 (10%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGI +VYDVTD++SFNNVKQWL EIDRYA V+KLLVGNK D+
Sbjct: 66 GQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDM 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
TD K+V AK FAD LGIPFLETSAK++ NVEQAFLTMA +IK +MGS + + A
Sbjct: 126 TDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKAS 185
Query: 168 SVQMKGQPIQQNTN--CC 183
G + N++ CC
Sbjct: 186 VNVSPGHGVSNNSSGGCC 203
>YPT1_PHYIN (Q01890) Ras-like GTP-binding protein YPT1
Length = 201
Score = 218 bits (554), Expect = 8e-57
Identities = 115/196 (58%), Positives = 138/196 (69%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWLHEIDRYA +V+KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T ++V T AK FA+ LGI FLETSAK++ NVE+AF+ MAA+IK +M + P K+ +
Sbjct: 126 TAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKAGVK 185
Query: 168 SVQMKGQPIQQNTNCC 183
+ P + CC
Sbjct: 186 LTPGQQVPSNGGSKCC 201
>RB1B_RAT (P10536) Ras-related protein Rab-1B
Length = 201
Score = 216 bits (551), Expect = 2e-56
Identities = 118/198 (59%), Positives = 141/198 (70%), Gaps = 23/198 (11%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
T+TSSYYRGAHGII+VYDVTD ES+ NVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 66 GQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LG+PFLETSAK++ NVEQAF+TMAAEIK +MG G+ S E
Sbjct: 126 TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMG---PGAASGGE 182
Query: 168 SVQMK--GQPIQQNTNCC 183
+K P++ + C
Sbjct: 183 RPNLKIDSTPVKSASGGC 200
>RB1B_MOUSE (Q9D1G1) Ras-related protein Rab-1B
Length = 201
Score = 216 bits (551), Expect = 2e-56
Identities = 119/198 (60%), Positives = 141/198 (71%), Gaps = 23/198 (11%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ES+ NVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LG+PFLETSAK++ NVEQAF+TMAAEIK +MG G+ S E
Sbjct: 126 TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMG---PGAASGGE 182
Query: 168 SVQMK--GQPIQQNTNCC 183
+K P++ + C
Sbjct: 183 RPNLKIDSTPVKPASGGC 200
>RB1B_HUMAN (Q9H0U4) Ras-related protein Rab-1B
Length = 201
Score = 216 bits (551), Expect = 2e-56
Identities = 118/185 (63%), Positives = 136/185 (72%), Gaps = 21/185 (11%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ES+ NVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V TAK FAD LGIPFLETSAK++ NVEQAF+TMAAEIK +MG G+ S E
Sbjct: 126 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG---PGAASGGE 182
Query: 168 SVQMK 172
+K
Sbjct: 183 RPNLK 187
>RB1B_DICDI (P34140) Ras-related protein Rab1B (Fragment)
Length = 199
Score = 204 bits (518), Expect = 1e-52
Identities = 116/197 (58%), Positives = 136/197 (68%), Gaps = 22/197 (11%)
Query: 7 YLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------- 53
YLFKLL+IGDS VGKSCLLLRFADD+Y ++YISTIGVDF K + L
Sbjct: 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTINLDGKIIKLQIWDTA 59
Query: 54 -----TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLT 108
TITSSYYRGAHGII+VYDVTD SFNNVKQW+ EI RYA SV++LLVGNKCDL
Sbjct: 60 GERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLI 119
Query: 109 DNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGS-QPTGSKS-AA 166
+ K+V T TA+ +AD +GIPF ETSAK S NVEQAF+ MA+EIK G QP + + A
Sbjct: 120 EKKIVDTSTAREYADSVGIPFKETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNA 179
Query: 167 ESVQMKG-QPIQQNTNC 182
V+ G PI + C
Sbjct: 180 HVVKPTGFTPIGKKKKC 196
>YPT1_YEAST (P01123) GTP-binding protein YPT1 (Protein YP2)
Length = 206
Score = 202 bits (515), Expect = 3e-52
Identities = 114/200 (57%), Positives = 130/200 (65%), Gaps = 22/200 (11%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IG+S VGKSCLLLRF+DD+Y + YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRG+HGIIIVYDVTD ESFN VK WL EIDRYA +V KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQ----PTGSK 163
D ++V AK FAD +PFLETSA DS NVE AFLTMA +IK M Q T K
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185
Query: 164 SAAESVQMKGQPIQQNTNCC 183
+V +KGQ + C
Sbjct: 186 EDKGNVNLKGQSLTNTGGGC 205
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,592,575
Number of Sequences: 164201
Number of extensions: 786106
Number of successful extensions: 3692
Number of sequences better than 10.0: 573
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2460
Number of HSP's gapped (non-prelim): 623
length of query: 184
length of database: 59,974,054
effective HSP length: 104
effective length of query: 80
effective length of database: 42,897,150
effective search space: 3431772000
effective search space used: 3431772000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140549.10