BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140068.13 + phase: 0
(233 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B" 242 6e-64
RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B" 238 1e-62
RU1A_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snR... 226 5e-59
RU1A_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snR... 214 1e-55
RU1A_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snR... 210 3e-54
RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snR... 209 4e-54
RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B" 99 1e-20
MSL1_YEAST (P40567) U2 small nuclear ribonucleoprotein B" 55 1e-07
PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kD... 52 2e-06
PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kD... 52 2e-06
PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein 49 1e-05
K682_HUMAN (Q9Y4C8) Probable RNA-binding protein KIAA0682 48 2e-05
PTB_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB) ... 48 2e-05
PABX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g3... 47 5e-05
PAB5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bin... 45 1e-04
PAB5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bin... 45 1e-04
PAB5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bin... 45 1e-04
PAB5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bin... 45 1e-04
PAB5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bin... 45 1e-04
PAB5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bin... 45 1e-04
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"
Length = 225
Score = 242 bits (617), Expect = 6e-64
Identities = 128/229 (55%), Positives = 160/229 (68%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTMEQAAAA 119
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ P GT A+N TA+ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 120 ANKKPGQGTPNAANTQGTAAPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 177 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"
Length = 225
Score = 238 bits (606), Expect = 1e-62
Identities = 125/229 (54%), Positives = 159/229 (68%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTVEQTATT 119
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ P GT ++N ++ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 120 TNKKPGQGTPNSANTQGNSTPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 177 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>RU1A_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1-A) (Sex determination protein snf)
Length = 216
Score = 226 bits (575), Expect = 5e-59
Identities = 125/233 (53%), Positives = 157/233 (66%), Gaps = 28/233 (12%)
Query: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASN 67
PNQTIYI NLNEKIKK+ELK+SLY +FSQ+G+ILDI+ALKT K+RGQA+V F E+ +ASN
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 68 AVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKK-------QEEKAEKKKYA 120
A+R MQ FPFY+KPM+I Y+K+ SD +AK +G+F R KK K +EK +KKK
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKK-K 123
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
S +++ PN AQ PN ILF+ NLP ET ML MLF
Sbjct: 124 PSSAENSNPN--------------------AQTEQPPNQILFLTNLPEETNEMMLSMLFN 163
Query: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
Q+PGFKEVRL+ + IAFV+F + QS+ A +ALQGFKITP + M I FAKK
Sbjct: 164 QFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>RU1A_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A)
Length = 281
Score = 214 bits (545), Expect = 1e-55
Identities = 128/278 (46%), Positives = 163/278 (58%), Gaps = 55/278 (19%)
Query: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASN 67
PN TIYI NLNEKIKKDELK+SLY +FSQ+G+ILDI+ ++ K+RGQA+V F EV++A+N
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 68 AVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSA 127
A+R MQ FPFY+KPMRIQYAKT SD IAK +G+FV R++K+ EK + K + + A
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR---EKRKPKSQETPATKKA 123
Query: 128 VPNGGTH---GASNGG-----------------------------------STASFRPGS 149
V GG GA G + PG+
Sbjct: 124 VQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 183
Query: 150 --------GAQEAAAP------NNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKP 195
G A P N+ILF+ NLP ET ML MLF Q+PGFKEVRL+ +
Sbjct: 184 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 243
Query: 196 GIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
IAFV+F+++ Q+ A ALQGFKIT N M I+FAKK
Sbjct: 244 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 281
>RU1A_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A)
Length = 286
Score = 210 bits (534), Expect = 3e-54
Identities = 126/273 (46%), Positives = 157/273 (57%), Gaps = 48/273 (17%)
Query: 9 NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNA 68
N TIYI NLNEKIKKDELK+SLY +FSQ+G+ILDI+ + K+RGQA+V F EVT+A+NA
Sbjct: 14 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 73
Query: 69 VRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKK------KKQEEKAEKKKYADE 122
+R MQ FPFY+KPMRIQYAKT SD IAK +G++V R++K K QE A KK
Sbjct: 74 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGG 133
Query: 123 SKQSAV------------------------------------PNGGTHGASNGGSTASFR 146
+ V P G G G+ +
Sbjct: 134 AAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ 193
Query: 147 PGSGAQEAAAP------NNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFV 200
G A P N+ILF+ NLP ET ML MLF Q+PGFKEVRL+ + IAFV
Sbjct: 194 LMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 253
Query: 201 DFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
+F+++ Q+ A ALQGFKIT N M I+FAKK
Sbjct: 254 EFDNEVQAGAARDALQGFKITQNNAMKISFAKK 286
>RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A)
Length = 282
Score = 209 bits (532), Expect = 4e-54
Identities = 121/282 (42%), Positives = 162/282 (56%), Gaps = 57/282 (20%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
++ PN TIYI NLNEKIKKDELK+SLY +FSQ+G+ILDI+ + K+RGQA+V F E ++
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPRE--KKKKQEEKAEKKKYADE 122
A+NA+R MQ FPFY+KPMRIQY+KT SD IAK +G+FV R+ +++K++ K + +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKN 124
Query: 123 SKQSAV---------------------------------------------------PNG 131
+ A P G
Sbjct: 125 AMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGG 184
Query: 132 GTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLI 191
HG G A +P S PN+ILF+ NLP ET ML MLF Q+PGFKEVRL+
Sbjct: 185 MPHGQLMPGQMAPMQPIS----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
Query: 192 EAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
+ IAFV+F+++ Q+ A ++LQGFKIT N M I+FAKK
Sbjct: 241 PGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"
Length = 111
Score = 98.6 bits (244), Expect = 1e-20
Identities = 48/105 (45%), Positives = 74/105 (69%)
Query: 11 TIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVR 70
T+Y+ NLN+KI K++L+ +LY LFS YG ++DI+ALKTPK+RGQA V F + +AA+ A++
Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMK 64
Query: 71 QMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAE 115
++NF F+ K M+IQYA +KS I + R K+ ++A+
Sbjct: 65 ALKNFIFFGKEMKIQYAHSKSKIIERIVAENDSRGPLKRLRDEAD 109
>MSL1_YEAST (P40567) U2 small nuclear ribonucleoprotein B"
Length = 111
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/81 (30%), Positives = 50/81 (60%), Gaps = 1/81 (1%)
Query: 11 TIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVR 70
T+Y+ LNEKI L+ +L+ LF+ +G +L +++ K RGQA++ + AS A
Sbjct: 29 TLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQI 87
Query: 71 QMQNFPFYEKPMRIQYAKTKS 91
+ F+ KP++++++K+++
Sbjct: 88 SLNGERFFGKPLKVEFSKSET 108
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa
subunit)
Length = 125
Score = 51.6 bits (122), Expect = 2e-06
Identities = 36/117 (30%), Positives = 58/117 (48%), Gaps = 15/117 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVT 63
+PP N+ +YI+NL KI +E+ Y +F +YG I I TP+ RG A+V + ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEE-KAEKKKY 119
A NA + F + + + Y +F + KKK+E+ K K+KY
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNANR--------AFQKMDTKKKEEQLKLLKEKY 117
Score = 38.9 bits (89), Expect = 0.010
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 158 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRL--IEAKPGIAFVDFEDDGQSSMAMQAL 215
N IL+I NLPY+ T + +F +Y +++R+ G A+V +ED + A L
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
Query: 216 QGFKI 220
GF +
Sbjct: 78 SGFNV 82
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa
subunit) (CGI-110) (HSPC175) (Ht006)
Length = 125
Score = 51.6 bits (122), Expect = 2e-06
Identities = 36/117 (30%), Positives = 58/117 (48%), Gaps = 15/117 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVT 63
+PP N+ +YI+NL KI +E+ Y +F +YG I I TP+ RG A+V + ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEE-KAEKKKY 119
A NA + F + + + Y +F + KKK+E+ K K+KY
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNANR--------AFQKMDTKKKEEQLKLLKEKY 117
Score = 38.9 bits (89), Expect = 0.010
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 158 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRL--IEAKPGIAFVDFEDDGQSSMAMQAL 215
N IL+I NLPY+ T + +F +Y +++R+ G A+V +ED + A L
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
Query: 216 QGFKI 220
GF +
Sbjct: 78 SGFNV 82
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein
Length = 121
Score = 48.9 bits (115), Expect = 1e-05
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVT 63
+PP N+ +Y++NL KI DE +Y +F ++G I I TP+ RG A+V + ++
Sbjct: 9 LPPEVNRLLYVRNLPYKITSDE----MYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIF 64
Query: 64 AASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEE 112
A NA + F + + + Y ++ +F + KKQEE
Sbjct: 65 DAKNACDHLSGFNVCNRYLVVLYYQSNK--------AFKRVDMDKKQEE 105
Score = 37.4 bits (85), Expect = 0.030
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 158 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKP--GIAFVDFEDDGQSSMAMQAL 215
N +L++ NLPY+ T + +F ++ +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 216 QGFKI 220
GF +
Sbjct: 74 SGFNV 78
>K682_HUMAN (Q9Y4C8) Probable RNA-binding protein KIAA0682
Length = 960
Score = 48.1 bits (113), Expect = 2e-05
Identities = 54/223 (24%), Positives = 89/223 (39%), Gaps = 32/223 (14%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQ 71
I +KNL EL+ + + F GR+L P+ A V F E A A R
Sbjct: 589 ILVKNLPAGTLAAELQET-FGRFGSLGRVL------LPEGGTTAIVEFLEPLEARKAFRH 641
Query: 72 MQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVPNG 131
+ F+ P+ +++A A + KKK ++ + D ++ VP+G
Sbjct: 642 LAYSKFHHVPLYLEWAPVGVFSSAAPQ--------KKKLQDTPSEPMEKDPAEPETVPDG 693
Query: 132 GT--------HGASNGGSTASFRPGSGAQEAAA-PNNILFIENLPYETTGRMLEMLFEQY 182
T GA N + +E + P LFI+NL ++TT L+ +F +
Sbjct: 694 ETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKV 753
Query: 183 PGFKEVRLIEAK--------PGIAFVDFEDDGQSSMAMQALQG 217
K + + K G FV++ Q+ A++ LQG
Sbjct: 754 GTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQG 796
Score = 35.4 bits (80), Expect = 0.12
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 105 EKKKKQEEKAEKK----KYADESKQSAVPNGGTHGASNGGSTASFRPG----SGAQEAAA 156
E++ KQ K ++ +Y + ++ VP T GA +T S++ + +E A
Sbjct: 343 EEEVKQALKCNREYMGGRYIEVFREKNVPT--TKGAPKN-TTKSWQGRILGENEEEEDLA 399
Query: 157 PNNILFIENLPYETTGRMLEMLFEQYPGFKEVR-----LIEAKPGIAFVDF 202
+ LF+ NLPY +T LE LF +Y E+ L + G AF+ F
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITF 450
>PTB_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
(57 kDa RNA-binding protein PPTB-1)
Length = 531
Score = 47.8 bits (112), Expect = 2e-05
Identities = 56/227 (24%), Positives = 99/227 (42%), Gaps = 23/227 (10%)
Query: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASN 67
P I ++NL + D L + +FS++G +L II T + QA + +++ +A +
Sbjct: 182 PVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQH 236
Query: 68 AVRQMQNFPFYEK--PMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQ 125
A + Y +RI ++K S + + + R+ + + + D++
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTS--LNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 294
Query: 126 SA----VPNGGTHGASNGGSTASFRPGSGAQE-------AAAPNNILFIENL-PYETTGR 173
+A VPN HGA + S + A A A N++L + NL P T +
Sbjct: 295 AAFGLSVPN--VHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 352
Query: 174 MLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKI 220
L +LF Y + V+++ K A V D Q+ +AM L G K+
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL 399
>PABX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein
At2g36660 (Poly(A)-binding protein At2g36660) (PABP)
Length = 609
Score = 46.6 bits (109), Expect = 5e-05
Identities = 31/105 (29%), Positives = 53/105 (49%), Gaps = 6/105 (5%)
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILD--IIALKTPKLRGQAWVCFSEVTAASNAV 69
IY+KN+N + ++EL++ FSQ G I ++ + K +G +VCFS A +AV
Sbjct: 306 IYVKNVNVAVTEEELRKH----FSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAV 361
Query: 70 RQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKA 114
+ F+ KP+ + A+ K D + + F R + +K A
Sbjct: 362 KTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSA 406
>PAB5_MACMU (Q7JGR2) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 45.4 bits (106), Expect = 1e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDI-IALKTPKLRGQAWVCFSEVTAA 65
PP IYIKNL+E I ++LK FS +G I + ++ + +G VCFS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYEKPMRIQYAKTKSDC 93
+ AV +M KP+ + + + C
Sbjct: 355 TKAVDEMNGRVVGSKPLHVTLGQARRRC 382
>PAB5_PONPY (P60050) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDI-IALKTPKLRGQAWVCFSEVTAA 65
PP IYIKNL+E I ++LK FS +G I + ++ + +G VCFS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYEKPMRIQYAKTKSDC 93
+ AV +M KP+ + + + C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>PAB5_PANTR (P60049) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDI-IALKTPKLRGQAWVCFSEVTAA 65
PP IYIKNL+E I ++LK FS +G I + ++ + +G VCFS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYEKPMRIQYAKTKSDC 93
+ AV +M KP+ + + + C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>PAB5_HYLLA (P60048) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDI-IALKTPKLRGQAWVCFSEVTAA 65
PP IYIKNL+E I ++LK FS +G I + ++ + +G VCFS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYEKPMRIQYAKTKSDC 93
+ AV +M KP+ + + + C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>PAB5_HUMAN (Q96DU9) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDI-IALKTPKLRGQAWVCFSEVTAA 65
PP IYIKNL+E I ++LK FS +G I + ++ + +G VCFS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYEKPMRIQYAKTKSDC 93
+ AV +M KP+ + + + C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>PAB5_GORGO (P60047) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDI-IALKTPKLRGQAWVCFSEVTAA 65
PP IYIKNL+E I ++LK FS +G I + ++ + +G VCFS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYEKPMRIQYAKTKSDC 93
+ AV +M KP+ + + + C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,996,194
Number of Sequences: 164201
Number of extensions: 1182891
Number of successful extensions: 7949
Number of sequences better than 10.0: 224
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 7404
Number of HSP's gapped (non-prelim): 492
length of query: 233
length of database: 59,974,054
effective HSP length: 107
effective length of query: 126
effective length of database: 42,404,547
effective search space: 5342972922
effective search space used: 5342972922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 64 (29.3 bits)
Medicago: description of AC140068.13