BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140034.3 + phase: 0 
         (199 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PIP1_HUMAN (Q9H074) Polyadenylate-binding protein-interacting pr...    31  1.6
YPHG_ECOLI (P76585) Hypothetical protein yphG                          31  2.1
TLR5_MOUSE (Q9JLF7) Toll-like receptor 5 precursor                     30  3.7

>PIP1_HUMAN (Q9H074) Polyadenylate-binding protein-interacting
           protein 1 (Poly(A) binding protein-interacting protein
           1) (PABP-interacting protein 1) (PAIP-1)
          Length = 479

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 62  GYISYPRLRDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRWYLMYLVGCLLFDDRSN 121
           G   YP L ++   +L       G+ + E +E+ A             L GC+  DD   
Sbjct: 151 GCEDYPTLSEYVQDFLNHLTEQPGSFETE-IEQFAET-----------LNGCVTTDDALQ 198

Query: 122 KRIELIY--LTTMAD-GYAGMR--NYSWGGMTLAYLYGE----LADACRPGHRALGGSVT 172
           + +ELIY   T++ +  Y G R  NY    +T++   G     L   CR  +     +  
Sbjct: 199 ELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAK 258

Query: 173 LLTVRKLKFYIYVNFIFLLYFSV 195
              V + +F+ +V F+  LY ++
Sbjct: 259 GDEVTRKRFHAFVLFLGELYLNL 281


>YPHG_ECOLI (P76585) Hypothetical protein yphG
          Length = 1124

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 6/62 (9%)

Query: 89  PEELEELARVRTYCVRWYLMYLVGCLLFDDRS-NKRIE-----LIYLTTMADGYAGMRNY 142
           P  LEE+A + +    W+  +L+ C  ++ RS NK I      +      ADG+ G+  +
Sbjct: 759 PNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIH 818

Query: 143 SW 144
           +W
Sbjct: 819 AW 820


>TLR5_MOUSE (Q9JLF7) Toll-like receptor 5 precursor
          Length = 859

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 89  PEELEELARVRTYCVRWYLMYLVGCLLFDDRSNKRIELIYLTTMA 133
           PE+L++        V W+L  L GC+L +++  KR   I L T+A
Sbjct: 820 PEDLQD--------VGWFLDKLSGCILKEEKGKKRSSSIQLRTIA 856


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,328,582
Number of Sequences: 164201
Number of extensions: 1002081
Number of successful extensions: 2458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2457
Number of HSP's gapped (non-prelim): 3
length of query: 199
length of database: 59,974,054
effective HSP length: 105
effective length of query: 94
effective length of database: 42,732,949
effective search space: 4016897206
effective search space used: 4016897206
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)