BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140033.4 + phase: 0
(495 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13... 46 3e-04
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I 42 0.003
UL07_EBV (P29882) BBRF2 protein 37 0.15
MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplas... 34 0.76
P18_LEITA (Q25423) P18 protein, mitochondrial precursor 34 0.99
UPPP_XANCP (Q8PDZ9) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 31 8.4
UPPP_XANAC (Q8PQW6) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 31 8.4
GM12_SCHPO (Q09174) Alpha-1,2-galactosyltransferase (EC 2.4.1.-) 31 8.4
>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
(Leucine-rich PPR-motif containing protein)
Length = 1273
Score = 45.8 bits (107), Expect = 3e-04
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 174 NEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDV----VSWNAMIAGYVVCGLSK 229
N P R V++ +I Y G++E A + KD+ ++A++ G+ G +
Sbjct: 71 NIQPNR--VTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDME 128
Query: 230 QALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNAL 289
A + M AG+ P T L+LL+A A+ GD+++ K+ KV + + + L +
Sbjct: 129 NAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDL-LQI 187
Query: 290 IDMYAKCGNIKESLDVFW 307
I ++K G + S FW
Sbjct: 188 IFSFSKAGYLSMS-QKFW 204
Score = 35.8 bits (81), Expect = 0.26
Identities = 71/407 (17%), Positives = 152/407 (36%), Gaps = 67/407 (16%)
Query: 34 TNYAHQLFAQIPQP----DTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPF 89
T +AH+++ + + D YN +++ Q+ +M ++ + T+
Sbjct: 22 TEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQR 81
Query: 90 VLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDL----NVATSLFDDS 145
++ + + + S + G + V + L+ HA+ GD+ N+ T + D
Sbjct: 82 LIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAG 141
Query: 146 CKGDVVAWSSLIAGYARRGD-------LKVARKLFNEMPERDL--VSWNVMITGYVKQGE 196
+ + +L+ YA +GD L+ K + +RDL + ++ GY+ +
Sbjct: 142 IEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAGYLSMSQ 201
Query: 197 MESARMLFDEAPVKDVVSWNAMIAG----------YVVCGLSKQ-ALELFNEMCRAGVFP 245
+ + + D ++ ++ + C +SK+ +F
Sbjct: 202 KFWKKFTCERRYIPDAMNLILLLVTEKLEDVALQILLACPVSKEDGPSVFGSFFLQHCVT 261
Query: 246 DEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKES--- 302
+ L C L +++ +H+ ++ ++ LL N A +KE
Sbjct: 262 MNTPVEKLTDYCKKLKEVQ----MHSFPLQFTLH--CALLANKTDLAKALMKAVKEEGFP 315
Query: 303 --LDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACS 360
FW + +VG + + + + K MQ + P++ T+ ++ C
Sbjct: 316 IRPHYFWPL-----------LVGRRKEKNVQGIIEILKGMQELGVHPDQETYTDYVIPC- 363
Query: 361 HAGEIDEGYKYFDLMSSEYKIEPNIRHCGCM--VDMLGRAGLLKEAA 405
FD ++S I ++ GC+ DM +AGL EAA
Sbjct: 364 -----------FDSVNSARAI---LQENGCLSDSDMFSQAGLRSEAA 396
Score = 34.3 bits (77), Expect = 0.76
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
Query: 313 DVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYF 372
DV +N+++ + + M+ I PN +T+ ++ + + G+I+ K
Sbjct: 40 DVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKIL 99
Query: 373 DLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMK---IEPNAIIWRTLLAACKV 429
M ++ + +V RAG ++ A + M+ IEP + LL A
Sbjct: 100 GFMKTK-DLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAE 158
Query: 430 HGDVELAKVANEKL 443
GD++ K EK+
Sbjct: 159 KGDIDHVKQTLEKV 172
Score = 33.5 bits (75), Expect = 1.3
Identities = 29/154 (18%), Positives = 68/154 (43%), Gaps = 21/154 (13%)
Query: 118 NAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDV----VAWSSLIAGYARRGDLKVARKLF 173
N V L+ + GD+ A+ + D+ +S+L+ G+AR GD++ A +
Sbjct: 75 NRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENIL 134
Query: 174 NEMPERDLV----SWNVMITGYVKQGEMESARMLFDEAPVKDV---------VSWNAMIA 220
M + + ++ ++ Y ++G+++ + ++ ++ + ++ A
Sbjct: 135 TVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKA 194
Query: 221 GYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLL 254
GY+ +S++ + F C PD + L+ LL
Sbjct: 195 GYL--SMSQKFWKKFT--CERRYIPDAMNLILLL 224
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
Length = 1261
Score = 42.4 bits (98), Expect = 0.003
Identities = 55/269 (20%), Positives = 103/269 (37%), Gaps = 24/269 (8%)
Query: 134 DLNVATSLFDDS----CKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDL----VSWN 185
D A ++F+++ K V ++++++ R KLF EM E L V++
Sbjct: 906 DATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYG 965
Query: 186 VMITGYVKQGEMESARMLFDEAPVKD-----VVSWNAMIAGYVVCGLSKQ-ALELFNEMC 239
+I + G+ A LF E + V +N MI V +++ AL +N +C
Sbjct: 966 TVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLC 1025
Query: 240 RAGVFPDEVTLLSLLSACADLGDLENG---------KKVHAKVMEISMGKLSTLLGNALI 290
+ P T L+ A L + G ++ ++ + +LGN +
Sbjct: 1026 ATDIEPSSHTYKLLMDAYGTLKPVNVGSVKAVLELMERTDVPILSMHYAAYIHILGNVVS 1085
Query: 291 DMYAKCGNIKESLDVFWS-ITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNE 349
D+ A +L + D + S I + + E + + M+R + N
Sbjct: 1086 DVQAATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVSLNA 1145
Query: 350 ITFVGVLVACSHAGEIDEGYKYFDLMSSE 378
++ + G I + YFDL+ E
Sbjct: 1146 YIVNALIKGFTKVGMISKARYYFDLLECE 1174
Score = 33.9 bits (76), Expect = 0.99
Identities = 27/105 (25%), Positives = 51/105 (47%), Gaps = 11/105 (10%)
Query: 347 PNEITFVGVLVACSHAGEIDEGYKYFDLM--SSEYKIEPNIRHCGCMVDMLGRAGLLKEA 404
P TF ++ + G+ D+ ++ + + ++P++ ++ LGRA E
Sbjct: 886 PRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTEC 945
Query: 405 AKFIDSMK---IEPNAIIWRTLL-AACKVHGDVELAKVANEKLFS 445
K MK + P ++ + T++ AAC++ GD LA EKLF+
Sbjct: 946 WKLFQEMKESGLLPTSVTYGTVINAACRI-GDESLA----EKLFA 985
Score = 33.5 bits (75), Expect = 1.3
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 314 VISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFD 373
V +N+V+ + E LF+ M+ + + P +T+ V+ A G+ K F
Sbjct: 926 VFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFA 985
Query: 374 LMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKF----IDSMKIEPNAIIWRTLLAA 426
M ++ +P + M+ + +E A F + + IEP++ ++ L+ A
Sbjct: 986 EMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDA 1042
Score = 30.8 bits (68), Expect = 8.4
Identities = 23/94 (24%), Positives = 48/94 (50%), Gaps = 7/94 (7%)
Query: 187 MITGYVKQGEMESARM---LFDEAP---VK-DVVSWNAMIAGYVVCGLSKQALELFNEMC 239
+I ++G+ + A +F+E VK V +NA+++ + + +LF EM
Sbjct: 894 LINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMK 953
Query: 240 RAGVFPDEVTLLSLLSACADLGDLENGKKVHAKV 273
+G+ P VT ++++A +GD +K+ A++
Sbjct: 954 ESGLLPTSVTYGTVINAACRIGDESLAEKLFAEM 987
>UL07_EBV (P29882) BBRF2 protein
Length = 278
Score = 36.6 bits (83), Expect = 0.15
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 216 NAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTL-----LSLLSACADLGDLENGKKVH 270
++ GYV+ L ++ + VF + + L ++L+ CA L +EN K
Sbjct: 69 SSQFCGYVLVSLLDSEDQVDHLNIFPHVFSERMILYKPNNVNLMEMCALLSMIENAKSPS 128
Query: 271 AKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITD--KDVISWNSVIVGMALHG 328
+ +G+L+ L ++KC N+ +SL ++ ++ ++ + G A G
Sbjct: 129 IGLCREVLGRLTLL--------HSKCNNL-DSLFLYNGARTLLSTLVKYHDLEEGAATPG 179
Query: 329 HGKESLSLFKMMQRTKICPNE 349
E LSLFK+ + K P+E
Sbjct: 180 PWNEGLSLFKLHKELKRAPSE 200
>MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplast
precursor
Length = 662
Score = 34.3 bits (77), Expect = 0.76
Identities = 32/120 (26%), Positives = 54/120 (44%), Gaps = 8/120 (6%)
Query: 164 GDLKVARKLFNE---MPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIA 220
G ++ AR+LF + DL W +QG M+ AR LF E D S + +
Sbjct: 387 GRIERARELFEQGLRADPSDLYMWQAYGVMEAEQGNMDRARQLFQEGVWADPRSPSTVYV 446
Query: 221 GYVVCGLSKQA--LELFNEMCRAGVFPD---EVTLLSLLSACADLGDLENGKKVHAKVME 275
+ L QA ++ E+ +A V D E T S ++ ++LG++E ++ + E
Sbjct: 447 FHAWGALEWQAGNVQTARELFKAAVRVDPKSETTWASWIAMESELGEIERVDELRIRQAE 506
>P18_LEITA (Q25423) P18 protein, mitochondrial precursor
Length = 187
Score = 33.9 bits (76), Expect = 0.99
Identities = 16/46 (34%), Positives = 25/46 (53%)
Query: 338 KMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEP 383
+M R K+ PNE ++ V+ C +G+ GY LM +E+K P
Sbjct: 105 EMQHRNKVKPNEESWTWVMKECVQSGQFRLGYCVAKLMEAEFKRVP 150
>UPPP_XANCP (Q8PDZ9) Undecaprenyl-diphosphatase (EC 3.6.1.27)
(Undecaprenyl pyrophosphate phosphatase) (Bacitracin
resistance protein)
Length = 263
Score = 30.8 bits (68), Expect = 8.4
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 151 VAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMI 188
VAW+ LI G + VA ++PERD+V+W V I
Sbjct: 109 VAWALLIGGVW----MLVAEHFAGKLPERDVVTWKVAI 142
>UPPP_XANAC (Q8PQW6) Undecaprenyl-diphosphatase (EC 3.6.1.27)
(Undecaprenyl pyrophosphate phosphatase) (Bacitracin
resistance protein)
Length = 265
Score = 30.8 bits (68), Expect = 8.4
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 151 VAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMI 188
VAW+ LI G + VA ++PERD+V+W V I
Sbjct: 109 VAWALLIGGVW----MLVAEHFAGKLPERDVVTWKVAI 142
>GM12_SCHPO (Q09174) Alpha-1,2-galactosyltransferase (EC 2.4.1.-)
Length = 375
Score = 30.8 bits (68), Expect = 8.4
Identities = 21/81 (25%), Positives = 37/81 (44%), Gaps = 3/81 (3%)
Query: 13 LGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTFMYNVMIRGSSQSP--NPLRAIS 70
+ ++V +T TATPTVT+ H L P PD +++ + Q+ +PL +
Sbjct: 65 ISEVVSVTATLTETFTATPTVTSVVHALATTDPHPDNSKIVILMGSNFQNDANSPLHPFA 124
Query: 71 -LYTEMHRHFVKGDSYTFPFV 90
+ R + + Y F F+
Sbjct: 125 QSIIKNRREYAERHGYKFEFL 145
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,758,790
Number of Sequences: 164201
Number of extensions: 2287612
Number of successful extensions: 4951
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4933
Number of HSP's gapped (non-prelim): 18
length of query: 495
length of database: 59,974,054
effective HSP length: 114
effective length of query: 381
effective length of database: 41,255,140
effective search space: 15718208340
effective search space used: 15718208340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC140033.4