BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140030.9 - phase: 0 /pseudo
(113 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BCN5_CLOPE (P08696) Bacteriocin BCN5 31 0.45
GAG_IPMAE (P31790) Retrovirus-related Gag polyprotein 31 0.58
RL11_METTH (O27715) 50S ribosomal protein L11P 30 0.99
PHY_PICAB (Q40762) Phytochrome 29 2.2
YA2A_SCHPO (Q09701) Hypothetical protein C2F7.10 in chromosome I 28 2.9
PEN3_ADEM1 (O10439) Penton protein (Virion component III) (Pento... 28 2.9
NCAP_PVM (P26589) Nucleocapsid protein 28 2.9
DYHC_TRIGR (P23098) Dynein beta chain, ciliary 28 3.8
PRMA_CLOPE (Q8XIT6) Ribosomal protein L11 methyltransferase (EC ... 28 4.9
DYHC_ANTCR (P39057) Dynein beta chain, ciliary 28 4.9
ARGD_ANASP (P54752) Acetylornithine aminotransferase (EC 2.6.1.1... 28 4.9
YE27_METJA (Q58822) Hypothetical protein MJ1427 27 6.4
SYN_CLOPE (P58693) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 27 6.4
SRYA_DROPS (Q07964) Serendipity locus alpha protein 27 6.4
MREB_HAEIN (P44474) Rod shape-determining protein mreB 27 6.4
YFCY_ECOLI (P76503) Probable 3-ketoacyl-CoA thiolase (EC 2.3.1.1... 27 8.4
YAF0_STRCO (P41108) Putative lipoprotein SCO4650 precursor 27 8.4
SODM_BORPE (P53642) Superoxide dismutase [Mn] (EC 1.15.1.1) 27 8.4
RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X ... 27 8.4
NCAP_HRSV1 (P24566) Nucleocapsid protein 27 8.4
>BCN5_CLOPE (P08696) Bacteriocin BCN5
Length = 890
Score = 31.2 bits (69), Expect = 0.45
Identities = 28/101 (27%), Positives = 44/101 (42%), Gaps = 9/101 (8%)
Query: 15 YLRASFWSLYSEAYGSER-CMKRWGRRIPALDAVVD------SITDVVGGDHRVLKILME 67
Y R F YG R M W + I A A+++ S +DVV G R L+ ++
Sbjct: 490 YFRNQFGFGQRSGYGDNRGFMIGWAKSIGAKAALIELPGSTKSHSDVVNG--RYLQKIIN 547
Query: 68 ELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLE 108
+ GGSGG + ++ E G+V+ Q+ + E
Sbjct: 548 AVTNLIGGSGGSSSGGSSFSDVSYEATGEVINVQSFLNVRE 588
>GAG_IPMAE (P31790) Retrovirus-related Gag polyprotein
Length = 255
Score = 30.8 bits (68), Expect = 0.58
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 1 EQMKRWKVRGKEKGYLRASF---WSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGG 57
+++K VR ++KG L+A W L E C + LD + +S+++V G
Sbjct: 53 DKLKGDLVREQQKGKLKAGIIPLWKLVKSCLTDEDCQQMVEAGQKVLDEIQESLSEVERG 112
Query: 58 DHRVLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKK 100
+ ++ LK G +G LE E+ + G++ K+
Sbjct: 113 EKVKVERKQSALKNLGLSTG---LEPEEKRYKGKNALGEIRKR 152
>RL11_METTH (O27715) 50S ribosomal protein L11P
Length = 160
Score = 30.0 bits (66), Expect = 0.99
Identities = 22/86 (25%), Positives = 46/86 (52%), Gaps = 12/86 (13%)
Query: 38 GRRIPALDAVVDSIT---DVVGGDHRVLKILMEELKRKGGGSGGG-----NLEMEKVFKL 89
G ++P + +VD+ T +V G ++M+ELK + G G ++ ME+V K+
Sbjct: 48 GMKVP-VKIIVDTDTRDFEVEVGTPPTTALIMDELKLEKGSQDPGMDKIADISMEQVLKI 106
Query: 90 AREVYGKVVK---KQAMRTLLELCIA 112
AR + ++ K+A++ ++ C++
Sbjct: 107 ARMKFDALLSNDYKRAVKEIMGTCVS 132
>PHY_PICAB (Q40762) Phytochrome
Length = 1136
Score = 28.9 bits (63), Expect = 2.2
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
Query: 13 KGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKRK 72
K YL+ + + +G ++ + + DVVGG H V I ++ ++
Sbjct: 70 KAYLQRLQKEMLIQPFGCVLAVEEGSCAVVGYSENAPEMLDVVGGAHAVPSIGGQQ--QE 127
Query: 73 GGGSGGGNLEM 83
GGG GGG L +
Sbjct: 128 GGGGGGGLLRI 138
>YA2A_SCHPO (Q09701) Hypothetical protein C2F7.10 in chromosome I
Length = 642
Score = 28.5 bits (62), Expect = 2.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 21 WSLYSEAYGSERCMKRWGRRIPALDAVVDSIT----DVVGGDHRVLKILMEE 68
W+ Y C+ RWG + A D D +T +VGG+ + +K++++E
Sbjct: 140 WASYHGNEPITNCLLRWGADVLATDE--DKMTPLHWSIVGGNLKCMKLILKE 189
>PEN3_ADEM1 (O10439) Penton protein (Virion component III) (Penton
base protein)
Length = 489
Score = 28.5 bits (62), Expect = 2.9
Identities = 16/42 (38%), Positives = 21/42 (49%)
Query: 37 WGRRIPALDAVVDSITDVVGGDHRVLKILMEELKRKGGGSGG 78
W +R P V + D+VGGD L L LK+ G+GG
Sbjct: 245 WRKRYPYQPGFVITYDDLVGGDIPPLLDLAAYLKKPREGAGG 286
>NCAP_PVM (P26589) Nucleocapsid protein
Length = 393
Score = 28.5 bits (62), Expect = 2.9
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 8 VRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILME 67
VRG K + F L+ AYG+ + M RWG ++ ++ V +V+++
Sbjct: 233 VRGGSK--VEGLFSGLFMNAYGAGQVMLRWGLLAKSVKNIMLGHASVQAEMEQVVEVY-- 288
Query: 68 ELKRKGGGSGG 78
E +K GG G
Sbjct: 289 EYAQKQGGEAG 299
>DYHC_TRIGR (P23098) Dynein beta chain, ciliary
Length = 4466
Score = 28.1 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 1/48 (2%)
Query: 61 VLKILMEELKRK-GGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLL 107
+ KI++E R GGG GGG+ EK+ L E+ K+ ++ M ++
Sbjct: 4175 LFKIVLELQPRDAGGGGGGGSSREEKIKSLLDEIVEKLPEEFNMMEIM 4222
>PRMA_CLOPE (Q8XIT6) Ribosomal protein L11 methyltransferase (EC
2.1.1.-) (L11 Mtase)
Length = 313
Score = 27.7 bits (60), Expect = 4.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 49 DSITDVVGGDHRVLKILMEELKRKGGGSGGGNLEMEKVFK 88
D+I DV+ +K +EELK G G G +E EK+F+
Sbjct: 75 DNIDDVIA----YVKERVEELKESGLDVGEGTVEAEKMFE 110
>DYHC_ANTCR (P39057) Dynein beta chain, ciliary
Length = 4466
Score = 27.7 bits (60), Expect = 4.9
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 61 VLKILMEELKRK-GGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLL 107
+ K+++E R GGG GGG+ EK+ L E+ K+ ++ M ++
Sbjct: 4175 LFKVVLELQPRDAGGGGGGGSSREEKIKSLLDEIVEKLPEEFNMMEIM 4222
>ARGD_ANASP (P54752) Acetylornithine aminotransferase (EC 2.6.1.11)
(ACOAT)
Length = 427
Score = 27.7 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 44 LDAVVDSITDVVGGDHRVLKILMEELKRKGG 74
+ AV +I+++ GD+RV IL+E L+ +GG
Sbjct: 192 ISAVEAAISELDEGDYRVAAILIEPLQGEGG 222
>YE27_METJA (Q58822) Hypothetical protein MJ1427
Length = 328
Score = 27.3 bits (59), Expect = 6.4
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 7 KVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILM 66
K+ GKE + F E YG + R + + DV+GG+ LKIL
Sbjct: 37 KIEGKESDDISIEFDKKLIEKYGEDYIKSVRDR----VYNTAIKVLDVIGGEGVDLKIL- 91
Query: 67 EELKRKGGGSGGGNLEMEKVFKLAREVYGK 96
L G G G V KL ++Y K
Sbjct: 92 -SLFPAHSGLGSGTQLSLAVGKLISKIYNK 120
>SYN_CLOPE (P58693) Asparaginyl-tRNA synthetase (EC 6.1.1.22)
(Asparagine--tRNA ligase) (AsnRS)
Length = 465
Score = 27.3 bits (59), Expect = 6.4
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 5/37 (13%)
Query: 38 GRRIPALDAVVDSITDVVGGDHR-----VLKILMEEL 69
G+ + A+D +V I +++GG R VLK M EL
Sbjct: 373 GKTVAAMDCLVPGIGEIIGGSQREERLDVLKARMAEL 409
>SRYA_DROPS (Q07964) Serendipity locus alpha protein
Length = 549
Score = 27.3 bits (59), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 62 LKILMEELKRKGGGSGGGNLEMEKVFKLAREV 93
LK + E+ GG GG N+E+E +F +V
Sbjct: 43 LKAHLPEIAPDGGPEGGNNIEVETIFLCLTQV 74
>MREB_HAEIN (P44474) Rod shape-determining protein mreB
Length = 351
Score = 27.3 bits (59), Expect = 6.4
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 38 GRRIPALDAVVDSITDVVGGDHRVLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKV 97
G ++P AV + D+ GG V I + + GG+ E + R +G V
Sbjct: 151 GAKLPVSTAVGSMVIDIGGGTTEVAVISLNGIVYSSSVRIGGDRFDEAIISYVRRTFGSV 210
Query: 98 V 98
+
Sbjct: 211 I 211
>YFCY_ECOLI (P76503) Probable 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
(Acetyl-CoA acyltransferase) (Beta-ketothiolase)
Length = 436
Score = 26.9 bits (58), Expect = 8.4
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 29 GSERCMKRWGRRIPALDAVVDSITDVVGGD-----------HRVLKILMEELKRKGGGSG 77
GSER + R A V DS +V+GG R++ + EL+R+GGG G
Sbjct: 358 GSERFAREALGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFG 417
>YAF0_STRCO (P41108) Putative lipoprotein SCO4650 precursor
Length = 285
Score = 26.9 bits (58), Expect = 8.4
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 49 DSITDVVGGDHRVLKILMEELKRKGGGSGGG 79
D + VGG H + K + E+L+ GGG+G G
Sbjct: 146 DEFAERVGGRHWI-KYVYEDLEDLGGGAGAG 175
>SODM_BORPE (P53642) Superoxide dismutase [Mn] (EC 1.15.1.1)
Length = 211
Score = 26.9 bits (58), Expect = 8.4
Identities = 17/52 (32%), Positives = 23/52 (43%)
Query: 30 SERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKRKGGGSGGGNL 81
SE +++ RRIPAL + GG H +L + GGG G L
Sbjct: 50 SEEPVEQLLRRIPALPPGIHGAVRNHGGGHANHSLLWTVMSPSGGGRPDGRL 101
>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X
receptor beta)
Length = 533
Score = 26.9 bits (58), Expect = 8.4
Identities = 15/43 (34%), Positives = 19/43 (43%)
Query: 36 RWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKRKGGGSGG 78
RW RR P LD + V GG+ + + E R G G G
Sbjct: 35 RWRRRRPWLDPAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSG 77
>NCAP_HRSV1 (P24566) Nucleocapsid protein
Length = 391
Score = 26.9 bits (58), Expect = 8.4
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 2/59 (3%)
Query: 20 FWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKRKGGGSGG 78
F L+ AYGS + M RWG ++ ++ V +V+++ E +K GG G
Sbjct: 243 FAGLFMNAYGSGQVMLRWGVLAKSVKNIMLGHASVQAEMEQVVEVY--EYAQKLGGEAG 299
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,647,124
Number of Sequences: 164201
Number of extensions: 545913
Number of successful extensions: 1745
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 21
length of query: 113
length of database: 59,974,054
effective HSP length: 89
effective length of query: 24
effective length of database: 45,360,165
effective search space: 1088643960
effective search space used: 1088643960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC140030.9