BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140028.4 - phase: 2 /pseudo
(30 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SYN_HUMAN (O43776) Asparaginyl-tRNA synthetase, cytoplasmic (EC ... 32 0.34
HS1_MOUSE (P49710) Hematopoietic lineage cell specific protein (... 29 2.2
RF1_XANCP (Q8PC68) Peptide chain release factor 1 (RF-1) 29 2.9
IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 s... 28 3.8
IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 s... 28 3.8
SYN_MOUSE (Q8BP47) Asparaginyl-tRNA synthetase, cytoplasmic (EC ... 28 4.9
YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2... 27 8.4
RF1_XANAC (Q8PNU5) Peptide chain release factor 1 (RF-1) 27 8.4
INCE_MOUSE (Q9WU62) Inner centromere protein 27 8.4
HS1_HUMAN (P14317) Hematopoietic lineage cell specific protein (... 27 8.4
DBNL_RAT (Q9JHL4) Drebrin-like protein (SH3 domain-containing pr... 27 8.4
>SYN_HUMAN (O43776) Asparaginyl-tRNA synthetase, cytoplasmic (EC
6.1.1.22) (Asparagine--tRNA ligase) (AsnRS)
Length = 548
Score = 32.0 bits (71), Expect = 0.34
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 71 HREQMKSESREKKEAEDSLRREKNLEEAKK 100
>HS1_MOUSE (P49710) Hematopoietic lineage cell specific protein
(Hematopoietic cell-specific LYN substrate 1) (LckBP1)
Length = 486
Score = 29.3 bits (64), Expect = 2.2
Identities = 14/27 (51%), Positives = 19/27 (69%)
Query: 2 SLQTEVRKREEKEAAEALRRDQELREA 28
SL E RKREE+E A+ + R Q+ R+A
Sbjct: 244 SLAEEKRKREEEEKAQQMARQQQERKA 270
>RF1_XANCP (Q8PC68) Peptide chain release factor 1 (RF-1)
Length = 361
Score = 28.9 bits (63), Expect = 2.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 2 SLQTEVRKREEKEAAEALRRDQELRE 27
++Q E R + + AAEA+R D E+RE
Sbjct: 51 AMQEEARAKADLSAAEAMRNDPEMRE 76
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3
subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3
p185) (eIF3a) (p162 protein) (Centrosomin)
Length = 1344
Score = 28.5 bits (62), Expect = 3.8
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 7 VRKREEKEAAEALRRDQELRE 27
+++REE+E AE +R++ELRE
Sbjct: 823 LKEREERERAERAKREEELRE 843
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3
subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3
p185) (eIF3a)
Length = 1382
Score = 28.5 bits (62), Expect = 3.8
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 7 VRKREEKEAAEALRRDQELRE 27
+++REE+E AE +R++ELRE
Sbjct: 823 LKEREERERAERAKREEELRE 843
>SYN_MOUSE (Q8BP47) Asparaginyl-tRNA synthetase, cytoplasmic (EC
6.1.1.22) (Asparagine--tRNA ligase) (AsnRS)
Length = 547
Score = 28.1 bits (61), Expect = 4.9
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 10 REEKEAAEALRRDQELREAKR 30
RE+KEA + LRR++ L EAK+
Sbjct: 79 REKKEAEDNLRREKNLEEAKK 99
>YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2
intergenic region
Length = 1489
Score = 27.3 bits (59), Expect = 8.4
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 4 QTEVRKREEKEAAEALRRDQELREAKR 30
+ +++K+ EKEA E ++++E +E+KR
Sbjct: 550 ERDLKKKIEKEAMEQAKKEEEEKESKR 576
>RF1_XANAC (Q8PNU5) Peptide chain release factor 1 (RF-1)
Length = 361
Score = 27.3 bits (59), Expect = 8.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 2 SLQTEVRKREEKEAAEALRRDQELRE 27
+L+ E R + + AEALR D E+RE
Sbjct: 51 ALEEEARAKADLATAEALRNDPEMRE 76
>INCE_MOUSE (Q9WU62) Inner centromere protein
Length = 880
Score = 27.3 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 4 QTEVRKREEKEAAEALRRDQELREAKR 30
Q E +R E+E E RR+QE RE +R
Sbjct: 660 QREQERRREQERREQERREQERREQER 686
>HS1_HUMAN (P14317) Hematopoietic lineage cell specific protein
(Hematopoietic cell-specific LYN substrate 1) (LckBP1)
Length = 486
Score = 27.3 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 2 SLQTEVRKREEKEAAEALRRDQELREA 28
S+ E RKREE+E A+ + R Q+ R+A
Sbjct: 244 SMAEEKRKREEEEKAQQVARRQQERKA 270
>DBNL_RAT (Q9JHL4) Drebrin-like protein (SH3 domain-containing
protein 7)
Length = 436
Score = 27.3 bits (59), Expect = 8.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
L+ + R EEK+ E RR++EL+EA R
Sbjct: 192 LEEKRRAEEEKQRLEEERRERELQEAAR 219
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.306 0.120 0.290
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,498,958
Number of Sequences: 164201
Number of extensions: 40326
Number of successful extensions: 480
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 15
length of query: 30
length of database: 59,974,054
effective HSP length: 6
effective length of query: 24
effective length of database: 58,988,848
effective search space: 1415732352
effective search space used: 1415732352
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC140028.4