BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.8 - phase: 0 
         (304 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SYA_NITEU (Q82TF8) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...    32  2.5
LEXA_XYLFT (Q87F45) LexA repressor (EC 3.4.21.88)                      32  2.5
LEXA_XYLFA (Q9PH24) LexA repressor (EC 3.4.21.88)                      32  2.5
MYOC_RABIT (Q866N2) Myocilin precursor (Trabecular meshwork-indu...    31  3.3
CIKG_RAT (Q63734) Potassium voltage-gated channel subfamily C me...    30  7.4
CIKG_HUMAN (Q03721) Potassium voltage-gated channel subfamily C ...    30  7.4
RNFG_BUCAI (P57217) Electron transport complex protein rnfG homolog    30  9.7

>SYA_NITEU (Q82TF8) Alanyl-tRNA synthetase (EC 6.1.1.7)
           (Alanine--tRNA ligase) (AlaRS)
          Length = 863

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 35  HEGAAQLMTYLGVSQHEAEKICNQKYGGYISYPRLRDFYTSYLGRANV 82
           HE A QLMTY    +  A  +  +KYG  +    + DF T   G  +V
Sbjct: 612 HEVATQLMTYDDAVKQGAMALFGEKYGDTVRVVAMGDFSTELCGGTHV 659


>LEXA_XYLFT (Q87F45) LexA repressor (EC 3.4.21.88)
          Length = 211

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 21/54 (38%), Positives = 27/54 (49%), Gaps = 10/54 (18%)

Query: 255 GVRRVYRHLPKRVLRQYGYVQTIP--------RHPTDVRDLPTAFHCADVRRLP 300
           GVR V  HL   VL Q G ++ IP        +H T+V ++  A    DV RLP
Sbjct: 38  GVRAVQHHLD--VLEQQGMIRRIPGQARGIRLKHLTEVDEVALALQSKDVLRLP 89


>LEXA_XYLFA (Q9PH24) LexA repressor (EC 3.4.21.88)
          Length = 211

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 21/54 (38%), Positives = 26/54 (47%), Gaps = 10/54 (18%)

Query: 255 GVRRVYRHLPKRVLRQYGYVQTIPR--------HPTDVRDLPTAFHCADVRRLP 300
           GVR V  HL   VL Q G ++ +PR        H T+V +   A    DV RLP
Sbjct: 38  GVRAVQHHLD--VLEQQGMIRRVPRQARGIRLKHLTEVDETALALQSEDVLRLP 89


>MYOC_RABIT (Q866N2) Myocilin precursor (Trabecular meshwork-induced
           glucocorticoid response protein)
          Length = 490

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 30/89 (33%), Positives = 34/89 (37%), Gaps = 18/89 (20%)

Query: 66  YPRLRDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRCYLLYLVGCLLFGDRSNKRIE 125
           Y R+  F   Y  +  VL     P  LE    V    V    LY  G    G R+  R E
Sbjct: 287 YDRISQFVQGYPSKVYVL-----PRSLESTGAV----VYAGSLYFQGA---GSRTVIRFE 334

Query: 126 LIYLTTMAD------GYAGMRNYSWGGMT 148
           L   T  A+      GY G   YSWGG T
Sbjct: 335 LNTETVKAEKEIPGAGYRGQFPYSWGGYT 363


>CIKG_RAT (Q63734) Potassium voltage-gated channel subfamily C
           member 4 (Voltage-gated potassium channel subunit Kv3.4)
           (Raw3)
          Length = 625

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/75 (22%), Positives = 34/75 (44%), Gaps = 12/75 (16%)

Query: 177 WFLAHFPGFFSVDLNTDYLENYPVAARWKLPKG-----HGEGITYWSLLDRIQLDDVCYK 231
           +F    PG F+      Y+ NY    +   P         E +T+W + D   ++  C+ 
Sbjct: 95  FFFDRHPGVFA------YVLNYYRTGKLHCPADVCGPLFEEELTFWGI-DETDVEPCCWM 147

Query: 232 PYKEHREIQDFEEVF 246
            Y++HR+ ++  ++F
Sbjct: 148 TYRQHRDAEEALDIF 162


>CIKG_HUMAN (Q03721) Potassium voltage-gated channel subfamily C
           member 4 (Voltage-gated potassium channel subunit Kv3.4)
           (KSHIIIC)
          Length = 582

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/75 (22%), Positives = 34/75 (44%), Gaps = 12/75 (16%)

Query: 177 WFLAHFPGFFSVDLNTDYLENYPVAARWKLPKG-----HGEGITYWSLLDRIQLDDVCYK 231
           +F    PG F+      Y+ NY    +   P         E +T+W + D   ++  C+ 
Sbjct: 94  FFFDRHPGVFA------YVLNYYRTGKLHCPADVCGPLFEEELTFWGI-DETDVEPCCWM 146

Query: 232 PYKEHREIQDFEEVF 246
            Y++HR+ ++  ++F
Sbjct: 147 TYRQHRDAEEALDIF 161


>RNFG_BUCAI (P57217) Electron transport complex protein rnfG homolog
          Length = 164

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 7/71 (9%)

Query: 119 RSNKRIELIYLTTMADGYAGMRNYSWGGMTLAYLYGELADACRPGHR---ALGGSVTLLT 175
           ++ K +  I  TT  DGY+G  N     +  AY  GE+ +A    H+    +G  + L  
Sbjct: 34  KNKKPVAAIVETTAPDGYSGAINM----LVAAYFNGEIINARVLSHKETPGIGDKIDLSI 89

Query: 176 TWFLAHFPGFF 186
           + ++  F G +
Sbjct: 90  SNWITRFTGMY 100


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,255,675
Number of Sequences: 164201
Number of extensions: 1795789
Number of successful extensions: 4023
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4022
Number of HSP's gapped (non-prelim): 7
length of query: 304
length of database: 59,974,054
effective HSP length: 110
effective length of query: 194
effective length of database: 41,911,944
effective search space: 8130917136
effective search space used: 8130917136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 65 (29.6 bits)