BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.9 + phase: 0
(500 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SNT1_YEAST (P25357) Potential DNA-binding protein SNT1 35 0.59
CARB_MYCTU (P57689) Carbamoyl-phosphate synthase large chain (EC... 35 0.59
HRCA_BACSH (O69266) Heat-inducible transcription repressor hrcA 33 2.2
YQIA_CAEEL (Q09281) Hypothetical protein C45G9.10 in chromosome III 32 2.9
HAT7_ARATH (Q00466) Homeobox-leucine zipper protein HAT7 (HD-ZIP... 32 3.8
YML7_YEAST (Q03735) Hypothetical 126.1 kDa protein in NDI1-ATR1 ... 32 5.0
RA16_YEAST (P31244) DNA repair protein RAD16 32 5.0
BRC2_HUMAN (P51587) Breast cancer type 2 susceptibility protein 32 5.0
ALR1_YERPE (Q8ZJ10) Alanine racemase 1 (EC 5.1.1.1) 32 5.0
WTM1_YEAST (Q12363) Transcriptional modulator WTM1 31 8.5
DAPE_ECOLI (P24176) Succinyl-diaminopimelate desuccinylase (EC 3... 31 8.5
AMID_PSECL (P27765) Amidase (EC 3.5.1.4) 31 8.5
>SNT1_YEAST (P25357) Potential DNA-binding protein SNT1
Length = 1226
Score = 34.7 bits (78), Expect = 0.59
Identities = 25/87 (28%), Positives = 38/87 (42%), Gaps = 9/87 (10%)
Query: 233 FPDERGVISVGRAATDYEQLYNQS-----SVHVSTTAHEKELE----ASNSDVVASTPLV 283
F +ER I +GR +T L N S S S + HE +LE +N V P +
Sbjct: 1077 FSNERNAIDIGRKSTTISNLLNNSDRSMKSSFQSASRHEAQLEDTPSMNNIVVQEIKPNI 1136
Query: 284 TTKKPESVSKNKQDIKSTRKESPNTFP 310
TT + S+S + + +P+ P
Sbjct: 1137 TTPRSSSISALLNPVNGNGQSNPDGRP 1163
>CARB_MYCTU (P57689) Carbamoyl-phosphate synthase large chain (EC
6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain)
Length = 1115
Score = 34.7 bits (78), Expect = 0.59
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 116 NHYGDGASFGLSISHSTEDSEPCMNFGGIKKVKVNQVNP----SDVQAPEQHNFDRQSTG 171
N G G F S H+ ++ G + V VN NP +D ++ F+ +
Sbjct: 576 NRIGQGIEFDYSCVHAATT----LSQAGFETVMVN-CNPETVSTDYDTADRLYFEPLTFE 630
Query: 172 DLHHVYHGEVETRSGS---------------IGLAYGSGDARIRPFGTPYGKVD 210
D+ VYH E+E+ SG +GLA+ DA + GTP +D
Sbjct: 631 DVLEVYHAEMESGSGGPGVAGVIVQLGGQTPLGLAHRLADAGVPIVGTPPEAID 684
>HRCA_BACSH (O69266) Heat-inducible transcription repressor hrcA
Length = 343
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/76 (23%), Positives = 38/76 (49%), Gaps = 5/76 (6%)
Query: 210 DNTVLSIAESYNKDETNIISFGGFPD---ERGVISVGRAATDYEQLY--NQSSVHVSTTA 264
DN ++ A+ + +TN+ + F D R ++ + + + L+ N+S +H+ +
Sbjct: 223 DNAIIQKAKIFYGGKTNMFNQPEFHDLNKVRMILDLMETTSQVQSLFHPNESGIHIRIGS 282
Query: 265 HEKELEASNSDVVAST 280
K+LE N V+ +T
Sbjct: 283 ENKQLEMENCSVITTT 298
>YQIA_CAEEL (Q09281) Hypothetical protein C45G9.10 in chromosome III
Length = 971
Score = 32.3 bits (72), Expect = 2.9
Identities = 61/244 (25%), Positives = 94/244 (38%), Gaps = 53/244 (21%)
Query: 181 VETRSGSIGLAYGSGDARIRPFGTP---------------YGKVDNTVLSIAESYNKDET 225
+ET S I Y SG + IR G P Y VD +V I + D
Sbjct: 508 IETASVQIN-GYKSG-SYIRRIGNPVYYDYIFINYFNSSEYWNVDESVGGIYMIFLNDPF 565
Query: 226 NIISFGGFPDERGVISVGRAATDYEQLYNQSSVHVSTTAHEKELEASNSDVVASTPLVTT 285
S G PDE + R +TDY L V +S K + P +T
Sbjct: 566 RKKSIGFKPDENNNFDIQRPSTDYSDL-----VVISVNKTTKNCD----------PAITV 610
Query: 286 KKPESVSKNKQDIKSTRKESPNTFPTNVRSLISTGMLDGVPVKYVSVAREELRGIIKGTT 345
+ E+ E F V S+ G+ + +PV+++S+ R + +K T
Sbjct: 611 RSLET---------GLIYEHAQYFNPMVFSIRFDGIRNELPVEHLSIERFDTVYHVKITN 661
Query: 346 YLCGCQSCNYAKGLNA-----FEFEKHAGCKSKHPNNHIYFENGKTIYQIVQELRSTPES 400
S Y +N+ +E +++A H Y+ NG+TI I++E +S S
Sbjct: 662 KHV---SIGYTSEVNSVFNGVWEKQENACTAVAEVGVHKYYINGETI--ILEEKQS--GS 714
Query: 401 SLFD 404
+FD
Sbjct: 715 LIFD 718
>HAT7_ARATH (Q00466) Homeobox-leucine zipper protein HAT7 (HD-ZIP
protein 7) (HD-ZIP protein ATHB-3)
Length = 251
Score = 32.0 bits (71), Expect = 3.8
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 16 DNPSKI-EPKRPHQWLIDATEGDFLPNKKQAIEDANERSSSGFSNVNFTPWENNHNFHSD 74
DN S + K+ H L+ + D +K++ + E + + +SN T ENNHN +S
Sbjct: 126 DNDSLLAHNKKLHAELVALKKHD----RKESAKIKREFAEASWSNNGST--ENNHNNNSS 179
Query: 75 PSHQNQLIDRLFGSETRPVNFTEKNTYV 102
++ +I LF S R T +T++
Sbjct: 180 DANHVSMIKDLFPSSIRSATATTTSTHI 207
>YML7_YEAST (Q03735) Hypothetical 126.1 kDa protein in NDI1-ATR1
intergenic region
Length = 1134
Score = 31.6 bits (70), Expect = 5.0
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 22/117 (18%)
Query: 217 AESYNKDETNIISFGGFPDERGVISVGRAA---TDYEQLYNQSSVHVSTTAHEKELEASN 273
AE+ N +ET SFGG V RA TDYE ++N+SS +++ + + S
Sbjct: 945 AENENGNETG--SFGGLGLAVASSDVKRATSDETDYEDIFNKSSGSSDSSSDVEVIMHSP 1002
Query: 274 SDV----------VASTPLVTTKKP-------ESVSKNKQDIKSTRKESPNTFPTNV 313
SD +S ++ +K+P E+V ++ + +S+ +++P P+ +
Sbjct: 1003 SDPEYALKSQTLRSSSQTVINSKRPVKIEDEEEAVGMSQLNYRSSLRQAPPRAPSTL 1059
>RA16_YEAST (P31244) DNA repair protein RAD16
Length = 790
Score = 31.6 bits (70), Expect = 5.0
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 207 GKVDNTVLSIAESYNKDETNIISFGGFPDERGVISVGRAATDYEQLYNQSSVHVSTTAHE 266
G +N S E Y D T + S D++ I + +D E+ + H ++
Sbjct: 41 GNSENVNDSQDEEYRDDATLVKSPDD--DDKDFI-IDLTGSDKERTATDENTHAIKNDND 97
Query: 267 KELEASNSDVVASTPLVTTKKPESVSKNKQDIKSTRKESPNTFP 310
+ +E V+ TKK ++ ++ K+ ST+K+SP P
Sbjct: 98 EIIEIKEERDVSDDDEPLTKKRKTTARKKKKKTSTKKKSPKVTP 141
>BRC2_HUMAN (P51587) Breast cancer type 2 susceptibility protein
Length = 3418
Score = 31.6 bits (70), Expect = 5.0
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 41 NKKQAIEDANERSSSGFSNVNFTPWENNHNFHSDPSHQNQ--LIDRLFGSETRPVNFT-- 96
N A D N S + ++ + N++++HSD + + L S PV
Sbjct: 1721 NSTIAENDKNHLSEKQDTYLSNSSMSNSYSYHSDEVYNDSGYLSKNKLDSGIEPVLKNVE 1780
Query: 97 -EKNTYVSGDGSDVRSKMIANHYGDGASFGLSISHSTEDSEPCMNFGGIKKVKVNQVNPS 155
+KNT S S+V+ AN Y + + + S PC N K+ ++ N
Sbjct: 1781 DQKNTSFSKVISNVKD---ANAYPQTVNEDICVEELVTSSSPCKNKNAAIKLSISNSNNF 1837
Query: 156 DVQAP 160
+V P
Sbjct: 1838 EVGPP 1842
>ALR1_YERPE (Q8ZJ10) Alanine racemase 1 (EC 5.1.1.1)
Length = 359
Score = 31.6 bits (70), Expect = 5.0
Identities = 30/92 (32%), Positives = 41/92 (43%), Gaps = 16/92 (17%)
Query: 180 EVETRSGSIGLAYGSGDARIRPFGTP----------YGKVDNTVLSI---AESYNKDETN 226
E +TR G I + YG G R P GTP G+V ++SI ES +K
Sbjct: 261 ERDTRLGVIAIGYGDGYPRSAPSGTPVWLNGREVSIVGRVSMDMISIDLGPESTDKVGDE 320
Query: 227 IISFGG-FPDERGVISVGRAATDYEQLYNQSS 257
+ +G P ER G +A YE + N +S
Sbjct: 321 ALMWGAELPVERVAACTGISA--YELITNLTS 350
>WTM1_YEAST (Q12363) Transcriptional modulator WTM1
Length = 437
Score = 30.8 bits (68), Expect = 8.5
Identities = 22/92 (23%), Positives = 32/92 (33%), Gaps = 7/92 (7%)
Query: 105 DGSDVRSKMIANHYGDGASFGLSISHSTEDSEPCMNFGGIKKV-------KVNQVNPSDV 157
+G D IAN Y G + + S S GG + +++ NP D
Sbjct: 311 NGEDPIQNEIANFYHAGGDSVVDVQFSATSSSEFFTVGGTGNIYHWNTDYSLSKYNPDDT 370
Query: 158 QAPEQHNFDRQSTGDLHHVYHGEVETRSGSIG 189
AP Q + T L ++ G IG
Sbjct: 371 IAPPQDATEESQTKSLRFLHKGGSRRSPKQIG 402
>DAPE_ECOLI (P24176) Succinyl-diaminopimelate desuccinylase (EC
3.5.1.18) (SDAP)
Length = 375
Score = 30.8 bits (68), Expect = 8.5
Identities = 14/44 (31%), Positives = 26/44 (58%)
Query: 200 RPFGTPYGKVDNTVLSIAESYNKDETNIISFGGFPDERGVISVG 243
+PF T GK+ + V++ E YN+ + +++ GG D R + +G
Sbjct: 291 QPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG 334
>AMID_PSECL (P27765) Amidase (EC 3.5.1.4)
Length = 505
Score = 30.8 bits (68), Expect = 8.5
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 255 QSSVHVSTTAHEKELEASNSDVVASTPLVTTKKPESVSKNKQDIKSTRKESPNTFPTNVR 314
Q+ + ++K L+ + V+ +TP+ P + + + + NT P ++
Sbjct: 399 QNLARFARQGYDKALQTYDLLVMPTTPITAQPHPPANCSITEYVARALEMIGNTAPQDIT 458
Query: 315 S----LISTGMLDGVPVKYVSVAREELRGII 341
I G+LDG+PV + VA+ G I
Sbjct: 459 GHPAMSIPCGLLDGLPVGLMLVAKHYAEGTI 489
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,053,386
Number of Sequences: 164201
Number of extensions: 2818995
Number of successful extensions: 4919
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4915
Number of HSP's gapped (non-prelim): 15
length of query: 500
length of database: 59,974,054
effective HSP length: 114
effective length of query: 386
effective length of database: 41,255,140
effective search space: 15924484040
effective search space used: 15924484040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC139841.9