BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139841.7 - phase: 0 
         (46 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TP3A_DROME (Q9NG98) DNA topoisomerase III alpha (EC 5.99.1.2)          28  4.7

>TP3A_DROME (Q9NG98) DNA topoisomerase III alpha (EC 5.99.1.2)
          Length = 1250

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 3/38 (7%)

Query: 3    RAKKGRPPITRIRTEMDDVETERRCGVCRMSDHSRKDC 40
            R   GR   T I +   D    RRCG+CR   H+R  C
Sbjct: 1208 RNPPGRSQPTAITS---DGPKTRRCGLCRKEGHTRNKC 1242


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,757,209
Number of Sequences: 164201
Number of extensions: 100119
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 1
length of query: 46
length of database: 59,974,054
effective HSP length: 22
effective length of query: 24
effective length of database: 56,361,632
effective search space: 1352679168
effective search space used: 1352679168
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)