BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.3 + phase: 0
(154 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RL2B_DAUCA (Q9AT35) 60S ribosomal protein L23a 260 1e-69
RL2B_FRIAG (O22644) 60S ribosomal protein L23A 254 5e-68
RL2B_TOBAC (Q07761) 60S ribosomal protein L23a (L25) 248 3e-66
RL2B_RAT (P62752) 60S ribosomal protein L23a 205 4e-53
RL2B_MOUSE (P62751) 60S ribosomal protein L23a 205 4e-53
RL2B_HUMAN (P62750) 60S ribosomal protein L23a 205 4e-53
RL25_PUCGR (P51997) 60S ribosomal protein L25 174 7e-44
RL25_YEAST (P04456) 60S ribosomal protein L25 (YL25) (RP61L) 156 1e-38
RL2B_CAEEL (P48162) 60S ribosomal protein L23a 1 154 7e-38
RL25_KLULA (P48045) 60S ribosomal protein L25 154 7e-38
RL25_PICJA (P08792) 60S ribosomal protein L25 152 3e-37
RL2C_CAEEL (Q20647) 60S ribosomal protein L23a 2 150 8e-37
R25A_SCHPO (Q10330) 60S ribosomal protein L25-A 150 8e-37
R25B_SCHPO (O74391) 60S ribosomal protein L25-B 150 1e-36
RL2B_TRYBB (P41165) 60S ribosomal protein L23a (L25) 136 2e-32
RL23_METJA (P54016) 50S ribosomal protein L23P 89 4e-18
RL23_PYRHO (O74095) 50S ribosomal protein L23P 86 2e-17
RL23_PYRAB (Q9V1T7) 50S ribosomal protein L23P 85 5e-17
RL23_METVA (P10143) 50S ribosomal protein L23P (ML7) 81 1e-15
RL23_ARCFU (O28356) 50S ribosomal protein L23P 75 4e-14
>RL2B_DAUCA (Q9AT35) 60S ribosomal protein L23a
Length = 154
Score = 260 bits (664), Expect = 1e-69
Identities = 132/148 (89%), Positives = 139/148 (93%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTA-IKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
DV+KK+D KAQALK AKAVKSGT KK KKIRT+VTFHRP+T TKDRNPKYPRISATPR
Sbjct: 7 DVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLD YQILK+PLTTESAMKKIEDNNTLVFIVD+RA+KKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
>RL2B_FRIAG (O22644) 60S ribosomal protein L23A
Length = 154
Score = 254 bits (649), Expect = 5e-68
Identities = 131/148 (88%), Positives = 136/148 (91%), Gaps = 2/148 (1%)
Query: 9 VSKKTDPKAQALKAAKAVKSG--TAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
V+KK D KAQALK AKAVKSG T KKAKKIRT+VTFHRPKT KDRNPKYPRISA PR
Sbjct: 7 VAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILK+PLTTESAMKKIEDNNTLVFIVD+RADKKKIK AVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDIANKIGII 154
>RL2B_TOBAC (Q07761) 60S ribosomal protein L23a (L25)
Length = 154
Score = 248 bits (634), Expect = 3e-66
Identities = 127/148 (85%), Positives = 135/148 (90%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D SKK+DPKAQA K AKAVKSG+ +KK ++KIRT VTFHRPKT KDRNPKYPRISA R
Sbjct: 7 DPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLD Y ILK+PLTTESAMKKIEDNNTLVFIVD++ADKKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
>RL2B_RAT (P62752) 60S ribosomal protein L23a
Length = 156
Score = 205 bits (521), Expect = 4e-53
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 73
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>RL2B_MOUSE (P62751) 60S ribosomal protein L23a
Length = 156
Score = 205 bits (521), Expect = 4e-53
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 73
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>RL2B_HUMAN (P62750) 60S ribosomal protein L23a
Length = 156
Score = 205 bits (521), Expect = 4e-53
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 73
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>RL25_PUCGR (P51997) 60S ribosomal protein L25
Length = 158
Score = 174 bits (441), Expect = 7e-44
Identities = 91/153 (59%), Positives = 111/153 (72%), Gaps = 8/153 (5%)
Query: 10 SKKTDPKAQALK--------AAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRI 61
S K +PKA + K A KAV GT+ K ++IRT+VTF RPKT R PKYPR
Sbjct: 6 STKAEPKASSAKTQVAKAKSAKKAVVKGTSSKTQRRIRTSVTFRRPKTLRLSRKPKYPRT 65
Query: 62 SATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKK 121
S ++D Y+ L PL TESAMKKIEDNNTL+FIVDL+A+K++I DAVKK+YD+ +
Sbjct: 66 SVPHAPRMDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLR 125
Query: 122 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct: 126 VNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158
>RL25_YEAST (P04456) 60S ribosomal protein L25 (YL25) (RP61L)
Length = 141
Score = 156 bits (395), Expect = 1e-38
Identities = 78/140 (55%), Positives = 103/140 (72%)
Query: 15 PKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQI 74
P A+A A KAV GT KKA K+RT+ TF PKT R PKY + N+LD Y++
Sbjct: 2 PSAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKV 61
Query: 75 LKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKA 134
++ P+T+E+AMKK+ED N LVF V ++A+K +IK AVK++Y++ KVNTL+RP+GTKKA
Sbjct: 62 IEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKA 121
Query: 135 YVRLTPDYDALDVANKIGII 154
YVRLT DYDALD+AN+IG I
Sbjct: 122 YVRLTADYDALDIANRIGYI 141
>RL2B_CAEEL (P48162) 60S ribosomal protein L23a 1
Length = 147
Score = 154 bits (389), Expect = 7e-38
Identities = 81/138 (58%), Positives = 102/138 (73%)
Query: 17 AQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILK 76
A+AL A K V G +++RT+V F RP T R ++PR SA +K+DH++I++
Sbjct: 10 AKALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQ 69
Query: 77 FPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYV 136
PLTTESAMKKIE++NTLVFIV A+K +IKDAV K+Y++QA KVNTLI P KKAYV
Sbjct: 70 HPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYV 129
Query: 137 RLTPDYDALDVANKIGII 154
RLT DYDALDVANKIG+I
Sbjct: 130 RLTADYDALDVANKIGVI 147
>RL25_KLULA (P48045) 60S ribosomal protein L25
Length = 142
Score = 154 bits (389), Expect = 7e-38
Identities = 76/140 (54%), Positives = 103/140 (73%)
Query: 15 PKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQI 74
P +A A KAV GT KKA K+RT+ +F PKT R+PKY + N+LD Y++
Sbjct: 3 PSTKATAAKKAVVKGTNGKKALKVRTSASFRLPKTLKLARSPKYATKAVPHYNRLDSYKV 62
Query: 75 LKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKA 134
++ P+T+E+AMKK+ED NTLVF V L+A+K +IK AVK++Y++ VNTL+RP+GTKKA
Sbjct: 63 IEQPITSETAMKKVEDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKA 122
Query: 135 YVRLTPDYDALDVANKIGII 154
YVRLT D+DALD+AN+IG I
Sbjct: 123 YVRLTADFDALDIANRIGYI 142
>RL25_PICJA (P08792) 60S ribosomal protein L25
Length = 142
Score = 152 bits (384), Expect = 3e-37
Identities = 76/140 (54%), Positives = 100/140 (71%)
Query: 15 PKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQI 74
P +A A KAV G+ KA K+RT+ TF PKT R PKY R + +LD+Y++
Sbjct: 3 PSTKAASAKKAVVKGSNGSKALKVRTSTTFRLPKTLKLTRAPKYARKAVPHYQRLDNYKV 62
Query: 75 LKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKA 134
+ P+ +E+AMKK+ED NTLVF VD++A+K +IK AVK +Y++ VNTLIRP+GTKKA
Sbjct: 63 IVAPIASETAMKKVEDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRPNGTKKA 122
Query: 135 YVRLTPDYDALDVANKIGII 154
YVRLT D+DALD+ANKIG I
Sbjct: 123 YVRLTADHDALDIANKIGYI 142
>RL2C_CAEEL (Q20647) 60S ribosomal protein L23a 2
Length = 146
Score = 150 bits (380), Expect = 8e-37
Identities = 80/137 (58%), Positives = 99/137 (71%)
Query: 18 QALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKF 77
+A++A KAV G+ K +RT+V F RPKT R P+Y R SA R+KLD + ++K
Sbjct: 10 KAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKA 69
Query: 78 PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVR 137
P TTES+MKKIED+NTLVFIVD +A+K IK AV +Y+++A KVNTLI P KKAYVR
Sbjct: 70 PHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVR 129
Query: 138 LTPDYDALDVANKIGII 154
L DYDALDVANKIG I
Sbjct: 130 LASDYDALDVANKIGFI 146
>R25A_SCHPO (Q10330) 60S ribosomal protein L25-A
Length = 141
Score = 150 bits (380), Expect = 8e-37
Identities = 77/138 (55%), Positives = 101/138 (72%)
Query: 17 AQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILK 76
A+A A K V+ G K AKK+RT+ TF RPKT R PKY R S +LD Y+I+
Sbjct: 4 AKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIV 63
Query: 77 FPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYV 136
P+ +ESAMKKIED+NTLVF V L+A+K IK+AV+K+Y ++ K+NTLIRP+GTKKA+V
Sbjct: 64 NPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFV 123
Query: 137 RLTPDYDALDVANKIGII 154
+L+ D DALDVAN+IG +
Sbjct: 124 KLSADADALDVANRIGFL 141
>R25B_SCHPO (O74391) 60S ribosomal protein L25-B
Length = 141
Score = 150 bits (378), Expect = 1e-36
Identities = 77/137 (56%), Positives = 101/137 (73%)
Query: 18 QALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKF 77
+A A K V+ G K A+K+RT+ TF RPKT R PKY R S ++LD Y+I+
Sbjct: 5 KAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVN 64
Query: 78 PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVR 137
P+ +ESAMKKIED+NTLVF V L+A+K IK+AVKK+Y + A K+NTLIRP+GTKKA+V+
Sbjct: 65 PINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124
Query: 138 LTPDYDALDVANKIGII 154
L+ D DALDVAN+IG +
Sbjct: 125 LSADADALDVANRIGFL 141
>RL2B_TRYBB (P41165) 60S ribosomal protein L23a (L25)
Length = 164
Score = 136 bits (342), Expect = 2e-32
Identities = 72/146 (49%), Positives = 95/146 (64%), Gaps = 2/146 (1%)
Query: 9 VSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNK 68
VSKK K AAK K K+ K T F RP T + K + +NK
Sbjct: 21 VSKKVAKKGAPAAAAKPTKVVKVTKR--KAYTRPQFRRPHTYRRPATVKPSSNVSAIKNK 78
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
D ++I+++PLTT+ AMKKIE+NNTL FIVD RA+K +IK A++K+Y ++ KVNTLIRP
Sbjct: 79 WDAFRIIRYPLTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRP 138
Query: 129 DGTKKAYVRLTPDYDALDVANKIGII 154
DG KKAY+RL+ YDALD ANK+G++
Sbjct: 139 DGLKKAYIRLSASYDALDTANKMGLV 164
>RL23_METJA (P54016) 50S ribosomal protein L23P
Length = 86
Score = 89.0 bits (219), Expect = 4e-18
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
+D + ++K P+ TE ++ IE+ N LVF VD RA K+ IK A+K+++D++ +KVNTLI P
Sbjct: 1 MDAFDVIKAPVVTEKTVRMIEEENKLVFYVDRRATKQDIKRAMKELFDVEVEKVNTLITP 60
Query: 129 DGTKKAYVRLTPDYDALDVANKIGI 153
G KKAYV+L YDA +A +GI
Sbjct: 61 KGEKKAYVKLKEGYDASKIAASLGI 85
>RL23_PYRHO (O74095) 50S ribosomal protein L23P
Length = 86
Score = 86.3 bits (212), Expect = 2e-17
Identities = 39/85 (45%), Positives = 61/85 (70%)
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
+D Y+++ P+ TE A+ IE N L FIVD RA K IK A++++++++ +KVNTLI P
Sbjct: 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKTDIKKAIEEIFNVKVEKVNTLITP 60
Query: 129 DGTKKAYVRLTPDYDALDVANKIGI 153
G KKAYV+L P+Y A ++A ++G+
Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
>RL23_PYRAB (Q9V1T7) 50S ribosomal protein L23P
Length = 86
Score = 85.1 bits (209), Expect = 5e-17
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
Query: 129 DGTKKAYVRLTPDYDALDVANKIGI 153
G KKAYV+L P+Y A ++A ++G+
Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
>RL23_METVA (P10143) 50S ribosomal protein L23P (ML7)
Length = 86
Score = 80.9 bits (198), Expect = 1e-15
Identities = 36/85 (42%), Positives = 60/85 (70%)
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
+D + ++K P+ +E MK IE+ N LVF V+ +A K+ IK+A+K++++ + +VNT I P
Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKEDIKEAIKQLFNAEVAEVNTNITP 60
Query: 129 DGTKKAYVRLTPDYDALDVANKIGI 153
G KKAY++L +Y+A +VA +GI
Sbjct: 61 KGQKKAYIKLKDEYNAGEVAASLGI 85
>RL23_ARCFU (O28356) 50S ribosomal protein L23P
Length = 83
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/80 (42%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 74 ILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 133
++K L TE ++ ++E N L IVD+RA K+ IK ++K+++++ ++VNTLI P G KK
Sbjct: 4 LIKCFLVTEKSVAELE-KNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKK 62
Query: 134 AYVRLTPDYDALDVANKIGI 153
AY++L PDY A ++ +K+G+
Sbjct: 63 AYIKLKPDYSAEEILSKLGV 82
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,701,885
Number of Sequences: 164201
Number of extensions: 599381
Number of successful extensions: 2400
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2320
Number of HSP's gapped (non-prelim): 90
length of query: 154
length of database: 59,974,054
effective HSP length: 101
effective length of query: 53
effective length of database: 43,389,753
effective search space: 2299656909
effective search space used: 2299656909
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC139841.3