BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.2 - phase: 0 /pseudo
(285 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y320_MYCPN (P75328) Hypothetical protein MG320 homolog (H08_orf287) 32 2.3
YEA4_YEAST (P40004) Hypothetical 39.3 kDa protein in GCN4-WBP1 i... 31 3.0
DLTB_BACSU (P39580) Protein dltB 31 4.0
Y938_METJA (Q58348) Hypothetical UPF0014 membrane protein MJ0938 30 6.7
AR41_YEAST (P38328) Probable ARP2/3 complex 41 kDa subunit (P41-... 30 6.7
KUP1_RHIME (Q92RN0) Probable potassium transport system protein ... 30 8.8
HTS1_COCCA (Q01886) HC-toxin synthetase (EC 6.3.2.-) (HTS) 30 8.8
CPSE_STRA5 (Q9AFI0) Galactosyl transferase cpsE (EC 2.7.8.-) 30 8.8
CPSE_STRA3 (Q04664) Galactosyl transferase cpsE (EC 2.7.8.-) 30 8.8
>Y320_MYCPN (P75328) Hypothetical protein MG320 homolog (H08_orf287)
Length = 287
Score = 31.6 bits (70), Expect = 2.3
Identities = 15/40 (37%), Positives = 26/40 (64%), Gaps = 2/40 (5%)
Query: 186 TIWGILLMIGYLGYHYKTQSLFAFRLFSLAYFVSFLSSLL 225
T+WG+ + + +TQ+LF R+F A+F+S ++SLL
Sbjct: 148 TVWGLSALPSQQRRYQQTQTLF--RIFIWAFFISIIASLL 185
>YEA4_YEAST (P40004) Hypothetical 39.3 kDa protein in GCN4-WBP1
intergenic region
Length = 342
Score = 31.2 bits (69), Expect = 3.0
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 96 PIYKYCLVSVSNILTTTCQYEALKY-VSFPVQTLAKCAKMIPVMIWSALIMQKKYQGTDY 154
P++ Y + V +++T KY +S P+ + +C + M L+ +KY
Sbjct: 69 PLHVYVITVVLFYISSTTNNNVFKYNISIPIHIVFRCFGTVITMFTCWLLNGRKYTKIQI 128
Query: 155 LLAFSVTLGCSIFILY 170
L +T+G I L+
Sbjct: 129 LSTLFLTIGAIIASLF 144
>DLTB_BACSU (P39580) Protein dltB
Length = 395
Score = 30.8 bits (68), Expect = 4.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 186 TIWGILLMIGYLGYHYKTQSLFAF 209
TIW +LL+ GYL Y K S F F
Sbjct: 60 TIWQVLLISGYLAYRQKANSGFVF 83
>Y938_METJA (Q58348) Hypothetical UPF0014 membrane protein MJ0938
Length = 250
Score = 30.0 bits (66), Expect = 6.7
Identities = 25/84 (29%), Positives = 42/84 (49%), Gaps = 12/84 (14%)
Query: 30 AFAVSGIMLTLVTYGVLQEKIMRVPYGVNKDYFKYSLFLVFCNRITTSAVSAAALVARDK 89
AF + G+M+TL +Y +++E ++ NK LF+ F +TT+ VS A L
Sbjct: 67 AFLMIGVMITLASYLIMREINLK-----NKTKLFICLFITF---LTTTIVSLAVLTI--P 116
Query: 90 ALLPVAPIYKYCLVS--VSNILTT 111
++ PIY L+ + N + T
Sbjct: 117 KVVKFEPIYVIPLMGMVIGNTMNT 140
>AR41_YEAST (P38328) Probable ARP2/3 complex 41 kDa subunit
(P41-ARC)
Length = 384
Score = 30.0 bits (66), Expect = 6.7
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 86 ARDKALLPV-----APIYKYCLVSVSNILTTTCQYEALKY 120
++DK+++ V APIY +C +IL TC+ + L Y
Sbjct: 6 SKDKSVVAVYKLVKAPIYSHCFSQDKSILAVTCETDCLVY 45
>KUP1_RHIME (Q92RN0) Probable potassium transport system protein
kup1
Length = 622
Score = 29.6 bits (65), Expect = 8.8
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 152 TDYLLAFSVTLGCSIFILYPAGTDISPYGRGRENTIWGILLMIGYLGYHYKTQSLFAFRL 211
+DY++ +V + +F + GT G IW +++ G +G+ + L FR
Sbjct: 137 SDYVVPIAVVILLLLFTVQSKGTAAVSNFFGPITLIWFVVM--GTIGFVHIADDLSIFRA 194
Query: 212 FSLAYFVSFL 221
F+ Y SFL
Sbjct: 195 FNPYYAASFL 204
>HTS1_COCCA (Q01886) HC-toxin synthetase (EC 6.3.2.-) (HTS)
Length = 5217
Score = 29.6 bits (65), Expect = 8.8
Identities = 27/95 (28%), Positives = 44/95 (45%), Gaps = 7/95 (7%)
Query: 127 TLAKCAKMIPVMIWSALIMQKKYQGT---DYLLAFSVTLGCSIFILYPAGTDISPYGRGR 183
TL+ K+IPV + S L+ Q T +Y + ++LY +GT P G
Sbjct: 3088 TLSGLTKVIPVSL-SELVQQITDNTTKKDEYCKSGDTDPSSPAYLLYTSGTSGKPKGVVM 3146
Query: 184 ENTIW--GILLMIGYLGYHYKTQSL-FAFRLFSLA 215
E+ W G Y+G++ T+ L F+ +F L+
Sbjct: 3147 EHRAWSLGFTCHAEYMGFNSCTRILQFSSLMFDLS 3181
>CPSE_STRA5 (Q9AFI0) Galactosyl transferase cpsE (EC 2.7.8.-)
Length = 449
Score = 29.6 bits (65), Expect = 8.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 29 VAFAVSGIMLTLVTYGVLQEKIMRVPYGVNKDYFKYSLFLVFCNRITTSAVSAAALVARD 88
+ F +S + G L+E M + Y + SLF +F N TT+ +S +A +
Sbjct: 37 IVFYLSDFYRDFWSRGYLEEFKMVLKYSFYYIFISSSLFFIFKNSFTTTRLSFFTFIAMN 96
Query: 89 KALL 92
LL
Sbjct: 97 SILL 100
>CPSE_STRA3 (Q04664) Galactosyl transferase cpsE (EC 2.7.8.-)
Length = 449
Score = 29.6 bits (65), Expect = 8.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 29 VAFAVSGIMLTLVTYGVLQEKIMRVPYGVNKDYFKYSLFLVFCNRITTSAVSAAALVARD 88
+ F +S + G L+E M + Y + SLF +F N TT+ +S +A +
Sbjct: 37 IVFYLSDFYRDFWSRGYLEEFKMVLKYSFYYIFISSSLFFIFKNSFTTTRLSFFTFIAMN 96
Query: 89 KALL 92
LL
Sbjct: 97 SILL 100
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.334 0.143 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,064,894
Number of Sequences: 164201
Number of extensions: 1043447
Number of successful extensions: 3962
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3955
Number of HSP's gapped (non-prelim): 12
length of query: 285
length of database: 59,974,054
effective HSP length: 109
effective length of query: 176
effective length of database: 42,076,145
effective search space: 7405401520
effective search space used: 7405401520
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 65 (29.6 bits)
Medicago: description of AC139841.2