BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.14 + phase: 0 /pseudo
(99 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YIRF_SCHPO (Q9P7I3) Hypothetical WD-repeat protein C664.15 in ch... 29 2.3
YPT3_CAEEL (P41881) Hypothetical protein F37A4.3 in chromosome III 28 3.0
YFCI_ECOLI (P77768) Hypothetical protein yfcI 28 5.2
CWL1_SCHPO (P53694) Cell lysis protein cwl1 28 5.2
Y274_BUCBP (Q89AK3) Hypothetical protein bbp274 27 6.8
YNO0_YEAST (P53910) Very hypothetical 21.7 kDa protein in AAH1-R... 27 8.8
YGDE_HAEIN (P45100) Hypothetical protein HI1195 27 8.8
YFF9_SCHPO (O14066) Hypothetical serine-rich protein C1687.09 in... 27 8.8
KG88_MOUSE (P59281) Protein KIAA1688 homolog (Fragment) 27 8.8
KG88_HUMAN (Q9C0H5) Protein KIAA1688 27 8.8
I12B_MOUSE (P43432) Interleukin-12 beta chain precursor (IL-12B)... 27 8.8
CEBA_BOVIN (O02754) CCAAT/enhancer binding protein alpha (C/EBP ... 27 8.8
>YIRF_SCHPO (Q9P7I3) Hypothetical WD-repeat protein C664.15 in
chromosome I
Length = 651
Score = 28.9 bits (63), Expect = 2.3
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Query: 6 ETFLRKLSLVAIAIASLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSH 65
E F+R L + A+AS T+ L ++I + R+ S P S+ F S HL+ S+
Sbjct: 496 EPFIRALDCLDAAVASGTVDGL-IRIWDLRIGLPVRSFIGHTAPISSLQFDSNHLYSGSY 554
Query: 66 KKNNRLWSSR 75
+ R+W R
Sbjct: 555 DNSVRIWDLR 564
>YPT3_CAEEL (P41881) Hypothetical protein F37A4.3 in chromosome III
Length = 229
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 50 KSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRLFLHIRNL 94
KS CD + +P H N W +H FS++ LH R L
Sbjct: 61 KSWCDKVDDYFVVPHHYVN---WQKPTEQWLIHHFSKMILHTRRL 102
>YFCI_ECOLI (P77768) Hypothetical protein yfcI
Length = 296
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/38 (36%), Positives = 17/38 (43%)
Query: 29 LQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSHK 66
+ I T P +A K LR P + DF HL P K
Sbjct: 1 MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRK 38
>CWL1_SCHPO (P53694) Cell lysis protein cwl1
Length = 308
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 53 CDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRL 87
C FT+T + +N LWS W N SFS L
Sbjct: 109 CPFTNTTKQNVDPEISNALWSVLTWKNTSCSFSTL 143
>Y274_BUCBP (Q89AK3) Hypothetical protein bbp274
Length = 331
Score = 27.3 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 5/44 (11%)
Query: 61 HLPSHKKNNRLWSSRDWNN-----KLHSFSRLFLHIRNLGLLPK 99
HL K NNRL+S + N ++SFS + ++N+ ++ K
Sbjct: 180 HLDLQKCNNRLYSVNELNGSVDIWSINSFSNELILLKNINIMSK 223
>YNO0_YEAST (P53910) Very hypothetical 21.7 kDa protein in AAH1-RLR1
intergenic region
Length = 189
Score = 26.9 bits (58), Expect = 8.8
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 43 KPHLRFPKSTCDFTSTHLHLPS-----HKKNNRLWSSRDWNNKLHSFSRLFLHIRNLGLL 97
K H + K+ T T LHL S K +R+ SR +F R + I + +L
Sbjct: 92 KSHFKRAKTAAKPTLTKLHLTSATRLQKMKKSRIKDSRRMKQLETNFKRKIIEIHEIAVL 151
Query: 98 P 98
P
Sbjct: 152 P 152
>YGDE_HAEIN (P45100) Hypothetical protein HI1195
Length = 363
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 28 FLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSHKKNNRL 71
F+ IP + P++APS+ L+ ++ F +P ++N RL
Sbjct: 178 FMGIPRLKFPADAPSRSTLKLEEAILTF------IPRKEENKRL 215
>YFF9_SCHPO (O14066) Hypothetical serine-rich protein C1687.09 in
chromosome I
Length = 1379
Score = 26.9 bits (58), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 45 HLRFPKSTCDFTSTHLHLPSH 65
H R P + +++S+ LH+PSH
Sbjct: 929 HKRIPSNKTEWSSSSLHIPSH 949
>KG88_MOUSE (P59281) Protein KIAA1688 homolog (Fragment)
Length = 1097
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 49 PKSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRLFLHIRNL 94
P S+C F + L PS + + W+S+ +N R + I N+
Sbjct: 657 PSSSCVFPTFTLRKPSSETDIENWASKHFNKHTQGLFRRKVSIANM 702
>KG88_HUMAN (Q9C0H5) Protein KIAA1688
Length = 1083
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 49 PKSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRLFLHIRNL 94
P S+C F + L PS + + W+S+ +N R + I N+
Sbjct: 674 PSSSCVFPTFTLRKPSSETDIENWASKHFNKHTQGLFRRKVSIANM 719
>I12B_MOUSE (P43432) Interleukin-12 beta chain precursor (IL-12B)
(Cytotoxic lymphocyte maturation factor 40 kDa subunit)
(CLMF p40)
Length = 335
Score = 26.9 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 56 TSTHLHLPSHKKNNRLWSSRDWNN 79
T +H HL HKK N +WS+ N
Sbjct: 96 TLSHSHLLLHKKENGIWSTEILKN 119
>CEBA_BOVIN (O02754) CCAAT/enhancer binding protein alpha (C/EBP
alpha)
Length = 353
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 32 PNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSH 65
PN+ P + PHL+F + C T+ HL P H
Sbjct: 188 PNSHPPPAHLAAPHLQFQIAHCGQTTMHLQ-PGH 220
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,800,807
Number of Sequences: 164201
Number of extensions: 450156
Number of successful extensions: 796
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 59,974,054
effective HSP length: 75
effective length of query: 24
effective length of database: 47,658,979
effective search space: 1143815496
effective search space used: 1143815496
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC139841.14