BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139748.7 + phase: 0 /pseudo
         (144 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HDRD_METBA (P96797) CoB--CoM heterodisulfide reductase iron-sulf...    33  0.16
HDRD_METMA (Q8PVW3) CoB--CoM heterodisulfide reductase 2 iron-su...    33  0.28
HDRD_METAC (Q8TSV7) CoB--CoM heterodisulfide reductase 2 iron-su...    32  0.36
YA67_METMP (Q6LYC4) Putative iron-sulfur protein MMP1067               29  3.1
US26_HCMVA (P09699) Hypothetical protein HHLF5                         28  6.8
Y092_METJA (Q57557) Putative iron-sulfur protein MJ0092                28  8.9

>HDRD_METBA (P96797) CoB--CoM heterodisulfide reductase iron-sulfur
           subunit D (EC 1.8.98.1)
          Length = 408

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           + Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 292 ITYHDPCHLGRHVGVFNAPRYVLSHIPGVKFVEMDRSKEFQRCCGAGGGV 341


>HDRD_METMA (Q8PVW3) CoB--CoM heterodisulfide reductase 2
           iron-sulfur subunit D (EC 1.8.98.1)
          Length = 409

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           V Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 293 VTYHDPCHLGRHVGVFDAPRYVLSHIPGVKFVEMDRVKEFQRCCGAGGGV 342


>HDRD_METAC (Q8TSV7) CoB--CoM heterodisulfide reductase 2
           iron-sulfur subunit D (EC 1.8.98.1)
          Length = 409

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           V Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 293 VTYHDPCHLGRHVGVFEPPRYVLSHIPGVKFVEMDRVKEFQRCCGAGGGV 342


>YA67_METMP (Q6LYC4) Putative iron-sulfur protein MMP1067
          Length = 494

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 16/52 (30%), Positives = 22/52 (41%), Gaps = 3/52 (5%)

Query: 37  VKVRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           + V Y  PCH RR  + +  PR  L     +KF E +    P   CG    +
Sbjct: 378 ITVTYHDPCHLRRGQKVYLEPRKILESIPKLKFIEME---IPDQCCGAGGGV 426


>US26_HCMVA (P09699) Hypothetical protein HHLF5
          Length = 603

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 15/42 (35%), Positives = 21/42 (49%)

Query: 27  YNRSVRKL*RVKVRYRSPCHERRRPRWWTRPRVPLSCASGIK 68
           ++ S+ +L RV  RYR  C   R P   TRP +    A  +K
Sbjct: 202 HDNSISELQRVTCRYRGECVPLRTPGEMTRPLLLCGQAENLK 243


>Y092_METJA (Q57557) Putative iron-sulfur protein MJ0092
          Length = 489

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 11/40 (27%), Positives = 22/40 (54%)

Query: 36  RVKVRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQR 75
           ++++ Y  PCH RR  + + +PR  L     ++F + + R
Sbjct: 374 KMRITYHDPCHLRRGQKIYKQPREILKSIPELEFIDIEAR 413


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.350    0.149    0.585 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,299,631
Number of Sequences: 164201
Number of extensions: 514175
Number of successful extensions: 1314
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1308
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 59,974,054
effective HSP length: 99
effective length of query: 45
effective length of database: 43,718,155
effective search space: 1967316975
effective search space used: 1967316975
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 60 (27.7 bits)