BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139745.7 + phase: 0
(240 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrom... 111 1e-24
PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic heli... 93 6e-19
RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Ar... 66 6e-11
HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like prote... 65 1e-10
EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABR... 60 4e-09
IND_ARATH (O81313) INDEHISCENT protein 57 3e-08
ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF ex... 57 5e-08
ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 54 3e-07
ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 54 4e-07
TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop... 51 2e-06
USF2_HUMAN (Q15853) Upstream stimulatory factor 2 (Upstream tran... 49 8e-06
USF2_RAT (Q63665) Upstream stimulatory factor 2 (Upstream transc... 47 3e-05
USF2_MOUSE (Q64705) Upstream stimulatory factor 2 (Upstream tran... 47 3e-05
USF1_XENBO (Q07957) Upstream stimulatory factor 1 (USF) (SPF1) (... 46 9e-05
CLOC_MOUSE (O08785) Circadian locomoter output cycles kaput prot... 46 9e-05
CLOC_HUMAN (O15516) Circadian locomoter output cycles kaput prot... 46 9e-05
USF1_MOUSE (Q61069) Upstream stimulatory factor 1 (Major late tr... 45 2e-04
USF1_HUMAN (P22415) Upstream stimulatory factor 1 (Major late tr... 45 2e-04
TFEB_MOUSE (Q9R210) Transcription factor EB 45 2e-04
TFEB_HUMAN (P19484) Transcription factor EB 45 2e-04
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
Length = 524
Score = 111 bits (278), Expect = 1e-24
Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 9/212 (4%)
Query: 7 KNGKVNFSNFSIPAVFLKSNQQRVQEKESKAVACTKFQQQKHLTLNAATKSNSGYERSRE 66
K VNFS+F PA F K+ + + + K+ Q + L A + S
Sbjct: 194 KPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRV-LGAKDSEDKVLNESVA 252
Query: 67 LLPTVDEHSEAAASHTNAPRIRGKRKASAINLCNAQKPSSVCSLEA-SNDLNFGVRKSHE 125
D S + + + KA +C++ + SL+ S + +++ H
Sbjct: 253 SATPKDNQKACLISEDSCRKDQESEKAV---VCSSVGSGN--SLDGPSESPSLSLKRKHS 307
Query: 126 DTDDSPYLSDNDEETQENIVKEK-PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRAL 184
+ D S++ EE + KE P R G KRS R+A+VHNLSER+RRD+INEK+RAL
Sbjct: 308 NIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRS-RSAEVHNLSERRRRDRINEKMRAL 366
Query: 185 KELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
+ELIPNCNK+DKASMLD+AI+YLK+L+LQ+Q+
Sbjct: 367 QELIPNCNKVDKASMLDEAIEYLKSLQLQVQI 398
>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic
helix-loop-helix protein 9) (bHLH9) (AtbHLH009) (Short
under red-light 2)
Length = 430
Score = 92.8 bits (229), Expect = 6e-19
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 9/96 (9%)
Query: 121 RKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEK 180
RK TD+S LSD I + R G+ R R A+VHNLSER+RRD+INE+
Sbjct: 226 RKRINHTDESVSLSDA-------IGNKSNQRSGSN--RRSRAAEVHNLSERRRRDRINER 276
Query: 181 IRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
++AL+ELIP+C+K DKAS+LD+AIDYLK+L+LQLQV
Sbjct: 277 MKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQV 312
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous
Arabidopsis protein-1) (RAP-1) (Basic helix-loop-helix
protein 6) (bHLH6) (AtbHLH006) (rd22BP1)
Length = 623
Score = 66.2 bits (160), Expect = 6e-11
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 23/207 (11%)
Query: 11 VNFSNFSIPAVFLKSNQQRVQEKESKAVACTKFQQQKHLTLNAATKSNSGYE-RSRELLP 69
+ F N S + N KF LN +T S++ + RS E+L
Sbjct: 309 IQFENGSSSTITENPNLDPTPSPVHSQTQNPKFNNTFSRELNFSTSSSTLVKPRSGEILN 368
Query: 70 TVDEHSEAA-----ASHTNAPRIRGKRKASAINLCNAQKPSSVCSLEASNDLNFGVRKSH 124
DE ++ +S++ + KRK S + L L+FG + +
Sbjct: 369 FGDEGKRSSGNPDPSSYSGQTQFENKRKRSMV-------------LNEDKVLSFGDKTAG 415
Query: 125 EDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRAL 184
E S + +E V+++P + G + H +ER+RR+K+N++ AL
Sbjct: 416 E----SDHSDLEASVVKEVAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYAL 471
Query: 185 KELIPNCNKMDKASMLDDAIDYLKTLK 211
+ ++PN +KMDKAS+L DAI Y+ LK
Sbjct: 472 RAVVPNVSKMDKASLLGDAIAYINELK 498
>HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like protein
HFR1) (Reduced phytochrome signaling) (Basic
helix-loop-helix FBI1 protein) (Basic helix-loop-helix
protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to
far-red light)
Length = 292
Score = 65.1 bits (157), Expect = 1e-10
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 112 ASNDLNFGVRKSHEDTDDSPYLSDNDEETQENIV----KEKPVREGNRVKRSYRNAK--- 164
A DL V H +TDD ++ D E + E P + +V S ++
Sbjct: 71 AKEDLLVVVPDEHSETDDHHHIKDFSERSDHRFYLRNKHENPKKRRIQVLSSDDESEEFT 130
Query: 165 ------VHNLSERKRRD-KINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
S+R+RRD K++ K+R L++L+PNC+K DK S+LD I+Y+K L+LQLQ+
Sbjct: 131 REVPSVTRKGSKRRRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQM 189
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3)
(Basic helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
(AtMyc-146)
Length = 596
Score = 60.5 bits (145), Expect = 4e-09
Identities = 29/75 (38%), Positives = 48/75 (63%), Gaps = 11/75 (14%)
Query: 141 QENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASML 200
+E ++ + P GN H LSE+KRR+K+NE+ L+ +IP+ +K+DK S+L
Sbjct: 392 KEELLPDTPEETGN-----------HALSEKKRREKLNERFMTLRSIIPSISKIDKVSIL 440
Query: 201 DDAIDYLKTLKLQLQ 215
DD I+YL+ L+ ++Q
Sbjct: 441 DDTIEYLQDLQKRVQ 455
>IND_ARATH (O81313) INDEHISCENT protein
Length = 169
Score = 57.4 bits (137), Expect = 3e-08
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 128 DDSPYLSDND--EETQENIVKEKPVR--EGNRVKRSYRNAKVHN----LSERKRRDKINE 179
+D Y D D +E Q I +PV K + RN ++ + + R+RR++I+E
Sbjct: 48 EDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISE 107
Query: 180 KIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
KIR LK ++P KMD ASMLD+AI Y K LK Q+++
Sbjct: 108 KIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRI 144
>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF
expression 1) (Basic helix-loop-helix protein 116)
(bHLH116) (AtbHLH116)
Length = 494
Score = 56.6 bits (135), Expect = 5e-08
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 114 NDLNFGVRKSHEDTD------DSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHN 167
N + G+R+ +D D + L+ +E E+ + V+ G K + N
Sbjct: 249 NSESSGMRRFSDDGDMDETGIEVSGLNYESDEINESGKAAESVQIGGGGKGKKKGMPAKN 308
Query: 168 L-SERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTL 210
L +ER+RR K+N+++ L+ ++P +KMD+AS+L DAIDYLK L
Sbjct: 309 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKEL 352
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein
Length = 610
Score = 53.9 bits (128), Expect = 3e-07
Identities = 27/63 (42%), Positives = 42/63 (65%)
Query: 153 GNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKL 212
G + S K H +SERKRR+K+NE LK L+P+ ++++KAS+L + I YLK L+
Sbjct: 404 GAAQEMSGTGTKNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQR 463
Query: 213 QLQ 215
++Q
Sbjct: 464 RVQ 466
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein
Length = 612
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/52 (48%), Positives = 39/52 (74%)
Query: 164 KVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQ 215
K H +SERKRR+K+NE LK L+P+ ++++KAS+L + I YLK L+ ++Q
Sbjct: 417 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQ 468
>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic
helix-loop-helix protein 42) (bHLH42) (AtbHLH042)
Length = 518
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 122 KSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKI 181
K H+ +P + ++ I + + + + KR R H ++ER+RR+K+NEK
Sbjct: 323 KEHQQVKTAP---SSQWVLKQMIFRVPFLHDNTKDKRLPREDLSHVVAERRRREKLNEKF 379
Query: 182 RALKELIPNCNKMDKASMLDDAIDYLKTLK 211
L+ ++P KMDK S+L D I Y+ L+
Sbjct: 380 ITLRSMVPFVTKMDKVSILGDTIAYVNHLR 409
>USF2_HUMAN (Q15853) Upstream stimulatory factor 2 (Upstream
transcription factor 2) (FOS-interacting protein) (FIP)
(Major late transcription factor 2)
Length = 346
Score = 49.3 bits (116), Expect = 8e-06
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 149 PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNK------MDKASMLDD 202
P +G R R R HN ER+RRDKIN I L ++IP+CN K +L
Sbjct: 223 PKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSK 282
Query: 203 AIDYLKTLK 211
A DY++ L+
Sbjct: 283 ACDYIRELR 291
>USF2_RAT (Q63665) Upstream stimulatory factor 2 (Upstream
transcription factor 2) (Major late transcription factor
2) (Fragment)
Length = 291
Score = 47.4 bits (111), Expect = 3e-05
Identities = 26/69 (37%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Query: 149 PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNK------MDKASMLDD 202
P +G R R R HN ER+RRDKIN I L ++IP+C+ K +L
Sbjct: 168 PKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSK 227
Query: 203 AIDYLKTLK 211
A DY++ L+
Sbjct: 228 ACDYIRELR 236
>USF2_MOUSE (Q64705) Upstream stimulatory factor 2 (Upstream
transcription factor 2) (Major late transcription factor
2)
Length = 346
Score = 47.4 bits (111), Expect = 3e-05
Identities = 26/69 (37%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Query: 149 PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNK------MDKASMLDD 202
P +G R R R HN ER+RRDKIN I L ++IP+C+ K +L
Sbjct: 223 PKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSK 282
Query: 203 AIDYLKTLK 211
A DY++ L+
Sbjct: 283 ACDYIRELR 291
>USF1_XENBO (Q07957) Upstream stimulatory factor 1 (USF) (SPF1) (B1
factor)
Length = 307
Score = 45.8 bits (107), Expect = 9e-05
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Query: 149 PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNK------MDKASMLDD 202
P +G R R + HN ER+RRDKIN I L ++IP+C+ K +L
Sbjct: 184 PKSDGPRTTRDDKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKTGQSKGGILSK 243
Query: 203 AIDYLKTLK 211
A DY++ L+
Sbjct: 244 ACDYIQELR 252
>CLOC_MOUSE (O08785) Circadian locomoter output cycles kaput protein
(mCLOCK)
Length = 855
Score = 45.8 bits (107), Expect = 9e-05
Identities = 28/83 (33%), Positives = 45/83 (53%), Gaps = 9/83 (10%)
Query: 130 SPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIP 189
S + +D + +V+E + RV R N SE+KRRD+ N I+ L ++P
Sbjct: 11 SSIVDRDDSSIFDGLVEEDDKDKAKRVSR--------NKSEKKRRDQFNVLIKELGSMLP 62
Query: 190 -NCNKMDKASMLDDAIDYLKTLK 211
N KMDK+++L +ID+L+ K
Sbjct: 63 GNARKMDKSTVLQKSIDFLRKHK 85
>CLOC_HUMAN (O15516) Circadian locomoter output cycles kaput protein
(hCLOCK)
Length = 846
Score = 45.8 bits (107), Expect = 9e-05
Identities = 28/83 (33%), Positives = 45/83 (53%), Gaps = 9/83 (10%)
Query: 130 SPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIP 189
S + +D + +V+E + RV R N SE+KRRD+ N I+ L ++P
Sbjct: 11 SSIVDRDDSSIFDGLVEEDDKDKAKRVSR--------NKSEKKRRDQFNVLIKELGSMLP 62
Query: 190 -NCNKMDKASMLDDAIDYLKTLK 211
N KMDK+++L +ID+L+ K
Sbjct: 63 GNARKMDKSTVLQKSIDFLRKHK 85
>USF1_MOUSE (Q61069) Upstream stimulatory factor 1 (Major late
transcription factor 1)
Length = 310
Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 149 PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNK------MDKASMLDD 202
P E R R + HN ER+RRDKIN I L ++IP+C+ K +L
Sbjct: 187 PKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSK 246
Query: 203 AIDYLKTLK 211
A DY++ L+
Sbjct: 247 ACDYIQELR 255
>USF1_HUMAN (P22415) Upstream stimulatory factor 1 (Major late
transcription factor 1)
Length = 310
Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 149 PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNK------MDKASMLDD 202
P E R R + HN ER+RRDKIN I L ++IP+C+ K +L
Sbjct: 187 PKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSK 246
Query: 203 AIDYLKTLK 211
A DY++ L+
Sbjct: 247 ACDYIQELR 255
>TFEB_MOUSE (Q9R210) Transcription factor EB
Length = 475
Score = 45.1 bits (105), Expect = 2e-04
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMD----KASMLDDAIDYLKTLKLQLQ 215
HNL ER+RR IN++I+ L LIP N +D K ++L ++DY++ ++ LQ
Sbjct: 239 HNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQKDLQ 292
>TFEB_HUMAN (P19484) Transcription factor EB
Length = 476
Score = 45.1 bits (105), Expect = 2e-04
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMD----KASMLDDAIDYLKTLKLQLQ 215
HNL ER+RR IN++I+ L LIP N +D K ++L ++DY++ ++ LQ
Sbjct: 240 HNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQKDLQ 293
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,674,696
Number of Sequences: 164201
Number of extensions: 996219
Number of successful extensions: 4427
Number of sequences better than 10.0: 270
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 4266
Number of HSP's gapped (non-prelim): 303
length of query: 240
length of database: 59,974,054
effective HSP length: 107
effective length of query: 133
effective length of database: 42,404,547
effective search space: 5639804751
effective search space used: 5639804751
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Medicago: description of AC139745.7