BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139708.7 + phase: 0
(159 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RUBR_PYRFU (P24297) Rubredoxin (Rd) 49 6e-06
RUB1_DESDE (P04170) Rubredoxin 1 (Rd-1) 48 8e-06
RUBR_METTH (O26258) Probable rubredoxin (RD) 47 2e-05
RUBR_PYRAB (Q9V099) Rubredoxin (Rd) 45 7e-05
RUB1_CHLTE (P58992) Rubredoxin 1 (Rd 1) 45 9e-05
RUBR_DESVM (P15412) Rubredoxin (Rd) 44 1e-04
RUBR_CLOAB (Q9AL94) Rubredoxin (Rd) 44 1e-04
RUB2_CHLTE (P58993) Rubredoxin 2 (Rd 2) 44 1e-04
RUBR_CHLLT (P09947) Rubredoxin (Rd) 44 2e-04
RUBR_DESVH (P00269) Rubredoxin (Rd) 44 2e-04
RUBR_SYNY3 (P73068) Rubredoxin (Rd) 43 3e-04
RUBR_BUTME (P14071) Rubredoxin (Rd) 42 4e-04
RUB3_CHLTE (P58025) Rubredoxin 3 (Rd 3) 41 0.001
RUBR_DESGI (P00270) Rubredoxin (Rd) 40 0.002
RUBR_CLOST (P23474) Rubredoxin (Rd) 40 0.002
RUBR_CLOPA (P00268) Rubredoxin (Rd) 39 0.004
RUBR_HELMO (P56263) Rubredoxin (Rd) 39 0.005
RUBR_TREPA (O83956) Rubredoxin (Rd) 38 0.011
RUB2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin) 38 0.011
RUB2_CLOPE (P14072) Rubredoxin 2 (Rd 2) 38 0.011
>RUBR_PYRFU (P24297) Rubredoxin (Rd)
Length = 53
Score = 48.5 bits (114), Expect = 6e-06
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 11/47 (23%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
++C+ CGYIY+E T F++LPD + CP+CGAPK F+
Sbjct: 3 WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFE 49
>RUB1_DESDE (P04170) Rubredoxin 1 (Rd-1)
Length = 45
Score = 48.1 bits (113), Expect = 8e-06
Identities = 20/43 (46%), Positives = 26/43 (59%), Gaps = 4/43 (9%)
Query: 67 QAYICRDCGYIYN----ERTAFDKLPDKYFCPVCGAPKRRFKP 105
Q Y+C CGY Y+ + FD+LPD + CPVCG K +F P
Sbjct: 2 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 44
>RUBR_METTH (O26258) Probable rubredoxin (RD)
Length = 63
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 11/54 (20%)
Query: 63 VASKQAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
V++ + Y CR CGYIY+ T F+ LP+ + CP CGA K+ FKP
Sbjct: 8 VSAMKRYKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKP 61
>RUBR_PYRAB (Q9V099) Rubredoxin (Rd)
Length = 53
Score = 45.1 bits (105), Expect = 7e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 11/45 (24%)
Query: 71 CRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
C+ CGYIY+E T F+ LPD + CP+CGAPK F+
Sbjct: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
>RUB1_CHLTE (P58992) Rubredoxin 1 (Rd 1)
Length = 69
Score = 44.7 bits (104), Expect = 9e-05
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 68 AYICRDCGYIYNERTA-----------FDKLPDKYFCPVCGAPKRRFKPYATDV 110
+++C +CGYIY+ FDKLPD + CPVC PK +F + + +
Sbjct: 16 SWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKFISQL 69
>RUBR_DESVM (P15412) Rubredoxin (Rd)
Length = 52
Score = 44.3 bits (103), Expect = 1e-04
Identities = 19/48 (39%), Positives = 26/48 (53%), Gaps = 11/48 (22%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
Y+C CGY Y+ TAF+ +P + CP+CGAPK F+P
Sbjct: 4 YVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEP 51
>RUBR_CLOAB (Q9AL94) Rubredoxin (Rd)
Length = 54
Score = 44.3 bits (103), Expect = 1e-04
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 11/48 (22%)
Query: 69 YICRDCGYIY-----------NERTAFDKLPDKYFCPVCGAPKRRFKP 105
Y+C CGYIY N T+F+ +PD + CP+CG K +F+P
Sbjct: 4 YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQFEP 51
>RUB2_CHLTE (P58993) Rubredoxin 2 (Rd 2)
Length = 52
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/44 (45%), Positives = 23/44 (51%), Gaps = 11/44 (25%)
Query: 71 CRDCGYIYNERT-----------AFDKLPDKYFCPVCGAPKRRF 103
C CGYIYN T +F+ LPD + CPVCGA K F
Sbjct: 6 CNICGYIYNPETGDPEGDIPAGTSFESLPDSWMCPVCGAGKEEF 49
>RUBR_CHLLT (P09947) Rubredoxin (Rd)
Length = 53
Score = 43.9 bits (102), Expect = 2e-04
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 67 QAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
Q Y+C CGY+Y+ T F+ LP+ + CPVCG K F+P
Sbjct: 2 QKYVCSVCGYVYDPADGEPDDPIDPGTGFEDLPEDWVCPVCGVDKDLFEP 51
>RUBR_DESVH (P00269) Rubredoxin (Rd)
Length = 52
Score = 43.5 bits (101), Expect = 2e-04
Identities = 20/47 (42%), Positives = 25/47 (52%), Gaps = 11/47 (23%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
Y+C CGY Y+ T+FD LP + CPVCGAPK F+
Sbjct: 4 YVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFE 50
>RUBR_SYNY3 (P73068) Rubredoxin (Rd)
Length = 115
Score = 43.1 bits (100), Expect = 3e-04
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 11/59 (18%)
Query: 56 PPRFTMRVASKQAYICRDCGYIY-----------NERTAFDKLPDKYFCPVCGAPKRRF 103
PP T+ + + CR CGY+Y + T F+ LP + CPVCGAP+ F
Sbjct: 5 PPEKTLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYF 63
>RUBR_BUTME (P14071) Rubredoxin (Rd)
Length = 53
Score = 42.4 bits (98), Expect = 4e-04
Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 11/52 (21%)
Query: 67 QAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKPYA 107
Q Y+C CGY+Y+ TAF LP+ + CP CG K F P A
Sbjct: 2 QKYVCDICGYVYDPAVGDPDNGVAPGTAFADLPEDWVCPECGVSKDEFSPEA 53
>RUB3_CHLTE (P58025) Rubredoxin 3 (Rd 3)
Length = 53
Score = 41.2 bits (95), Expect = 0.001
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 67 QAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
Q ++C CGY Y+ TAF+ LP+ + CPVCG K F+P
Sbjct: 2 QKWVCVPCGYEYDPADGDPENGIEPGTAFEDLPEDWVCPVCGVDKSFFEP 51
>RUBR_DESGI (P00270) Rubredoxin (Rd)
Length = 52
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 11/47 (23%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
Y+C CGY Y+ T F+ LPD + CPVCGA K F+
Sbjct: 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFE 50
>RUBR_CLOST (P23474) Rubredoxin (Rd)
Length = 53
Score = 40.0 bits (92), Expect = 0.002
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 69 YICRDCGYIY-----------NERTAFDKLPDKYFCPVCGAPKRRFKPYA 107
Y+C CGY+Y N T+F +P+ + CP+CG K +F+ A
Sbjct: 4 YVCTVCGYVYDPEVGDPDNNINPGTSFQDIPEDWVCPLCGVGKDQFEEEA 53
>RUBR_CLOPA (P00268) Rubredoxin (Rd)
Length = 54
Score = 39.3 bits (90), Expect = 0.004
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
Y C CGYIYN T F +PD + CP+CG K +F+
Sbjct: 4 YTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFE 50
>RUBR_HELMO (P56263) Rubredoxin (Rd)
Length = 52
Score = 38.9 bits (89), Expect = 0.005
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 11/48 (22%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
Y C CGY+Y+ TAF+ LP + CP+CG K F+P
Sbjct: 4 YGCLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEFEP 51
>RUBR_TREPA (O83956) Rubredoxin (Rd)
Length = 52
Score = 37.7 bits (86), Expect = 0.011
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 11/46 (23%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRF 103
Y+C CG+ YN TAF+ LPD + CP+CG K F
Sbjct: 4 YMCDLCGWGYNPEVGDADGGIPAGTAFENLPDHWECPLCGVDKTSF 49
>RUB2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin)
Length = 172
Score = 37.7 bits (86), Expect = 0.011
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 11/49 (22%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKPY 106
+IC CG+IY+E T F+ +PD + CP CGA K + Y
Sbjct: 121 WICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKEDYVLY 169
Score = 28.1 bits (61), Expect = 8.7
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 68 AYICRDCGYIYNER-----------TAFDKLPDKYFCPVC 96
+Y C DC Y+Y+E T + +P+ + CP C
Sbjct: 2 SYKCPDCNYVYDESAGNVHEGFSPGTPWHLIPEDWCCPDC 41
>RUB2_CLOPE (P14072) Rubredoxin 2 (Rd 2)
Length = 53
Score = 37.7 bits (86), Expect = 0.011
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 11/46 (23%)
Query: 69 YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRF 103
+IC CGYIY+ T F +PD + CP+CG K +F
Sbjct: 4 FICDVCGYIYDPAVGDPDNGVEPGTEFKDIPDDWVCPLCGVDKSQF 49
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,866,248
Number of Sequences: 164201
Number of extensions: 674252
Number of successful extensions: 2583
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2518
Number of HSP's gapped (non-prelim): 74
length of query: 159
length of database: 59,974,054
effective HSP length: 101
effective length of query: 58
effective length of database: 43,389,753
effective search space: 2516605674
effective search space used: 2516605674
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC139708.7