Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139708.7 + phase: 0 
         (159 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RUBR_PYRFU (P24297) Rubredoxin (Rd)                                    49  6e-06
RUB1_DESDE (P04170) Rubredoxin 1 (Rd-1)                                48  8e-06
RUBR_METTH (O26258) Probable rubredoxin (RD)                           47  2e-05
RUBR_PYRAB (Q9V099) Rubredoxin (Rd)                                    45  7e-05
RUB1_CHLTE (P58992) Rubredoxin 1 (Rd 1)                                45  9e-05
RUBR_DESVM (P15412) Rubredoxin (Rd)                                    44  1e-04
RUBR_CLOAB (Q9AL94) Rubredoxin (Rd)                                    44  1e-04
RUB2_CHLTE (P58993) Rubredoxin 2 (Rd 2)                                44  1e-04
RUBR_CHLLT (P09947) Rubredoxin (Rd)                                    44  2e-04
RUBR_DESVH (P00269) Rubredoxin (Rd)                                    44  2e-04
RUBR_SYNY3 (P73068) Rubredoxin (Rd)                                    43  3e-04
RUBR_BUTME (P14071) Rubredoxin (Rd)                                    42  4e-04
RUB3_CHLTE (P58025) Rubredoxin 3 (Rd 3)                                41  0.001
RUBR_DESGI (P00270) Rubredoxin (Rd)                                    40  0.002
RUBR_CLOST (P23474) Rubredoxin (Rd)                                    40  0.002
RUBR_CLOPA (P00268) Rubredoxin (Rd)                                    39  0.004
RUBR_HELMO (P56263) Rubredoxin (Rd)                                    39  0.005
RUBR_TREPA (O83956) Rubredoxin (Rd)                                    38  0.011
RUB2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin)                 38  0.011
RUB2_CLOPE (P14072) Rubredoxin 2 (Rd 2)                                38  0.011

>RUBR_PYRFU (P24297) Rubredoxin (Rd)
          Length = 53

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 11/47 (23%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
           ++C+ CGYIY+E            T F++LPD + CP+CGAPK  F+
Sbjct: 3   WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFE 49


>RUB1_DESDE (P04170) Rubredoxin 1 (Rd-1)
          Length = 45

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 20/43 (46%), Positives = 26/43 (59%), Gaps = 4/43 (9%)

Query: 67  QAYICRDCGYIYN----ERTAFDKLPDKYFCPVCGAPKRRFKP 105
           Q Y+C  CGY Y+    +   FD+LPD + CPVCG  K +F P
Sbjct: 2   QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 44


>RUBR_METTH (O26258) Probable rubredoxin (RD)
          Length = 63

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 11/54 (20%)

Query: 63  VASKQAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
           V++ + Y CR CGYIY+             T F+ LP+ + CP CGA K+ FKP
Sbjct: 8   VSAMKRYKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKP 61


>RUBR_PYRAB (Q9V099) Rubredoxin (Rd)
          Length = 53

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 11/45 (24%)

Query: 71  CRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
           C+ CGYIY+E            T F+ LPD + CP+CGAPK  F+
Sbjct: 6   CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50


>RUB1_CHLTE (P58992) Rubredoxin 1 (Rd 1)
          Length = 69

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 11/54 (20%)

Query: 68  AYICRDCGYIYNERTA-----------FDKLPDKYFCPVCGAPKRRFKPYATDV 110
           +++C +CGYIY+               FDKLPD + CPVC  PK +F  + + +
Sbjct: 16  SWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKFISQL 69


>RUBR_DESVM (P15412) Rubredoxin (Rd)
          Length = 52

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 26/48 (53%), Gaps = 11/48 (22%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
           Y+C  CGY Y+             TAF+ +P  + CP+CGAPK  F+P
Sbjct: 4   YVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEP 51


>RUBR_CLOAB (Q9AL94) Rubredoxin (Rd)
          Length = 54

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 11/48 (22%)

Query: 69  YICRDCGYIY-----------NERTAFDKLPDKYFCPVCGAPKRRFKP 105
           Y+C  CGYIY           N  T+F+ +PD + CP+CG  K +F+P
Sbjct: 4   YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQFEP 51


>RUB2_CHLTE (P58993) Rubredoxin 2 (Rd 2)
          Length = 52

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 23/44 (51%), Gaps = 11/44 (25%)

Query: 71  CRDCGYIYNERT-----------AFDKLPDKYFCPVCGAPKRRF 103
           C  CGYIYN  T           +F+ LPD + CPVCGA K  F
Sbjct: 6   CNICGYIYNPETGDPEGDIPAGTSFESLPDSWMCPVCGAGKEEF 49


>RUBR_CHLLT (P09947) Rubredoxin (Rd)
          Length = 53

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 11/50 (22%)

Query: 67  QAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
           Q Y+C  CGY+Y+             T F+ LP+ + CPVCG  K  F+P
Sbjct: 2   QKYVCSVCGYVYDPADGEPDDPIDPGTGFEDLPEDWVCPVCGVDKDLFEP 51


>RUBR_DESVH (P00269) Rubredoxin (Rd)
          Length = 52

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 25/47 (52%), Gaps = 11/47 (23%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
           Y+C  CGY Y+             T+FD LP  + CPVCGAPK  F+
Sbjct: 4   YVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFE 50


>RUBR_SYNY3 (P73068) Rubredoxin (Rd)
          Length = 115

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 11/59 (18%)

Query: 56  PPRFTMRVASKQAYICRDCGYIY-----------NERTAFDKLPDKYFCPVCGAPKRRF 103
           PP  T+   +   + CR CGY+Y           +  T F+ LP  + CPVCGAP+  F
Sbjct: 5   PPEKTLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYF 63


>RUBR_BUTME (P14071) Rubredoxin (Rd)
          Length = 53

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 11/52 (21%)

Query: 67  QAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKPYA 107
           Q Y+C  CGY+Y+             TAF  LP+ + CP CG  K  F P A
Sbjct: 2   QKYVCDICGYVYDPAVGDPDNGVAPGTAFADLPEDWVCPECGVSKDEFSPEA 53


>RUB3_CHLTE (P58025) Rubredoxin 3 (Rd 3)
          Length = 53

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 11/50 (22%)

Query: 67  QAYICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
           Q ++C  CGY Y+             TAF+ LP+ + CPVCG  K  F+P
Sbjct: 2   QKWVCVPCGYEYDPADGDPENGIEPGTAFEDLPEDWVCPVCGVDKSFFEP 51


>RUBR_DESGI (P00270) Rubredoxin (Rd)
          Length = 52

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 11/47 (23%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
           Y+C  CGY Y+             T F+ LPD + CPVCGA K  F+
Sbjct: 4   YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFE 50


>RUBR_CLOST (P23474) Rubredoxin (Rd)
          Length = 53

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 11/50 (22%)

Query: 69  YICRDCGYIY-----------NERTAFDKLPDKYFCPVCGAPKRRFKPYA 107
           Y+C  CGY+Y           N  T+F  +P+ + CP+CG  K +F+  A
Sbjct: 4   YVCTVCGYVYDPEVGDPDNNINPGTSFQDIPEDWVCPLCGVGKDQFEEEA 53


>RUBR_CLOPA (P00268) Rubredoxin (Rd)
          Length = 54

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 11/47 (23%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFK 104
           Y C  CGYIYN             T F  +PD + CP+CG  K +F+
Sbjct: 4   YTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFE 50


>RUBR_HELMO (P56263) Rubredoxin (Rd)
          Length = 52

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 11/48 (22%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKP 105
           Y C  CGY+Y+             TAF+ LP  + CP+CG  K  F+P
Sbjct: 4   YGCLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEFEP 51


>RUBR_TREPA (O83956) Rubredoxin (Rd)
          Length = 52

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 11/46 (23%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRF 103
           Y+C  CG+ YN             TAF+ LPD + CP+CG  K  F
Sbjct: 4   YMCDLCGWGYNPEVGDADGGIPAGTAFENLPDHWECPLCGVDKTSF 49


>RUB2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin)
          Length = 172

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 11/49 (22%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRFKPY 106
           +IC  CG+IY+E            T F+ +PD + CP CGA K  +  Y
Sbjct: 121 WICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKEDYVLY 169



 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 11/40 (27%)

Query: 68 AYICRDCGYIYNER-----------TAFDKLPDKYFCPVC 96
          +Y C DC Y+Y+E            T +  +P+ + CP C
Sbjct: 2  SYKCPDCNYVYDESAGNVHEGFSPGTPWHLIPEDWCCPDC 41


>RUB2_CLOPE (P14072) Rubredoxin 2 (Rd 2)
          Length = 53

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 11/46 (23%)

Query: 69  YICRDCGYIYNER-----------TAFDKLPDKYFCPVCGAPKRRF 103
           +IC  CGYIY+             T F  +PD + CP+CG  K +F
Sbjct: 4   FICDVCGYIYDPAVGDPDNGVEPGTEFKDIPDDWVCPLCGVDKSQF 49


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,866,248
Number of Sequences: 164201
Number of extensions: 674252
Number of successful extensions: 2583
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2518
Number of HSP's gapped (non-prelim): 74
length of query: 159
length of database: 59,974,054
effective HSP length: 101
effective length of query: 58
effective length of database: 43,389,753
effective search space: 2516605674
effective search space used: 2516605674
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)


Medicago: description of AC139708.7