BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139708.3 + phase: 0
(150 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B2_DAUCA (P37707) B2 protein 74 1e-13
GA83_YEAST (Q04739) Glucose repression protein GAL83 (SPM1 protein) 29 4.4
YM93_YEAST (P40308) Hypothetical 73.6 kDa protein in GLC8-PRE5 i... 28 5.8
YB48_METTH (O27216) Hypothetical UPF0254 protein MTH1148 28 7.5
ST12_ARATH (Q9MAX3) Sulfate transporter 1.2 28 7.5
SELB_HUMAN (P57772) Selenocysteine-specific elongation factor (E... 28 7.5
MUTS_BACHD (Q9KAC0) DNA mismatch repair protein mutS 28 7.5
LEGC_HUMAN (Q96DT0) Galectin-12 (Galectin-related inhibitor of p... 28 7.5
ARGB_XYLFT (Q87EL2) Acetylglutamate kinase (EC 2.7.2.8) (NAG kin... 28 7.5
ARGB_XYLFA (Q9PEM7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kin... 28 7.5
>B2_DAUCA (P37707) B2 protein
Length = 207
Score = 73.9 bits (180), Expect = 1e-13
Identities = 48/136 (35%), Positives = 68/136 (49%), Gaps = 15/136 (11%)
Query: 12 DKLAGFIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTDVKLLYGIYLAT 71
+ + G+IF+CN T E ++F LP + V I PG+ LFL++ L+G++ A
Sbjct: 72 ETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAA 131
Query: 72 STGMLNIEPYAF-------GGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHY---KF 121
S G NI+P A+ RFPAQV K C PL E+ F+ + HY KF
Sbjct: 132 SFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPIL-----HHYDGPKF 186
Query: 122 NPELNIRQVSSAIVTF 137
ELNI + S + F
Sbjct: 187 RLELNIPEAISLLDIF 202
>GA83_YEAST (Q04739) Glucose repression protein GAL83 (SPM1 protein)
Length = 417
Score = 28.9 bits (63), Expect = 4.4
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 40 GRKHIVERINPGMHLFLFDTDVKLLYGIYLATSTGML 76
G H+ ++ PG H F F D +L + YL T+T +
Sbjct: 198 GLMHVKLQLPPGTHRFRFIVDNELRFSDYLPTATDQM 234
>YM93_YEAST (P40308) Hypothetical 73.6 kDa protein in GLC8-PRE5
intergenic region
Length = 642
Score = 28.5 bits (62), Expect = 5.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 101 PLPENDFKHAIKDN---YQKHYKFNPELNIRQV 130
PL ND KH IK + Y KHY P +N V
Sbjct: 438 PLVVNDLKHEIKTSKYYYYKHYPNMPPINANTV 470
>YB48_METTH (O27216) Hypothetical UPF0254 protein MTH1148
Length = 157
Score = 28.1 bits (61), Expect = 7.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 23 RMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTDVKLLYGIYLATSTGMLNI 78
R+ ECF++ A H PG + + D+DV L+ G+++ T +G+ +I
Sbjct: 3 RVATAECFTH---GFVAREIHAYSMGYPGGYSWSVDSDVVLVAGLFIPTLSGIRSI 55
>ST12_ARATH (Q9MAX3) Sulfate transporter 1.2
Length = 653
Score = 28.1 bits (61), Expect = 7.5
Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Query: 42 KHIVERINPGMHLFLFDTDVKLLYGIYLATSTGMLNI-EPYAFGGRFPAQVSFKI 95
KH+ + INP ++ T L GI + GM+ + E A G F A ++I
Sbjct: 313 KHLDQGINPSSFHLIYFTGDNLAKGIRIGVVAGMVALTEAVAIGRTFAAMKDYQI 367
>SELB_HUMAN (P57772) Selenocysteine-specific elongation factor
(Elongation factor sec)
Length = 596
Score = 28.1 bits (61), Expect = 7.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 51 GMHLFLFDTDVKLLYGIYLATSTGMLNIEPYAFG--GRFPAQV 91
G LF +T+++L G+ + STG L I AFG G+F +
Sbjct: 490 GRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHI 532
>MUTS_BACHD (Q9KAC0) DNA mismatch repair protein mutS
Length = 865
Score = 28.1 bits (61), Expect = 7.5
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 12 DKLAGF--IFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTDVKLLYGIYL 69
D + GF + + +P R A+ GR +VER+ P D D+K I L
Sbjct: 543 DVIQGFATVSETHHYVRPALQEDRAIAIKGGRHPVVERVIPNGEYVANDVDMKDGRSILL 602
Query: 70 ATSTGMLNIEPY 81
T M Y
Sbjct: 603 ITGPNMAGKSTY 614
>LEGC_HUMAN (Q96DT0) Galectin-12 (Galectin-related inhibitor of
proliferation)
Length = 336
Score = 28.1 bits (61), Expect = 7.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 56 LFDTDVKLLYGIYLATSTGMLNIEPYAFGGR-FPAQVSFKILKDCLPLP 103
L D ++G L + G LNI P+ G R +PA F ++ L +P
Sbjct: 163 LSHVDTLGIFGDILVEAVGFLNINPFVEGSREYPAGHPFLLMSPRLEVP 211
>ARGB_XYLFT (Q87EL2) Acetylglutamate kinase (EC 2.7.2.8) (NAG
kinase) (AGK) (N-acetyl-L-glutamate
5-phosphotransferase)
Length = 421
Score = 28.1 bits (61), Expect = 7.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 56 LFDTDVKLLYGIYLATSTGMLNIEPYAFGGRFPAQVSFKILKDCLPL 102
L D D K++ I L+T L +P+ +GG K L D LPL
Sbjct: 198 LLDADGKIINSINLSTEYEQLIQQPWVYGGMKLKIEQIKHLLDRLPL 244
>ARGB_XYLFA (Q9PEM7) Acetylglutamate kinase (EC 2.7.2.8) (NAG
kinase) (AGK) (N-acetyl-L-glutamate
5-phosphotransferase)
Length = 421
Score = 28.1 bits (61), Expect = 7.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 56 LFDTDVKLLYGIYLATSTGMLNIEPYAFGGRFPAQVSFKILKDCLPL 102
L D D K++ I L+T L +P+ +GG K L D LPL
Sbjct: 198 LLDADGKIINSINLSTEYEQLIQQPWVYGGMKLKIEQIKHLLDRLPL 244
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.331 0.146 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,389,854
Number of Sequences: 164201
Number of extensions: 759219
Number of successful extensions: 1661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 11
length of query: 150
length of database: 59,974,054
effective HSP length: 100
effective length of query: 50
effective length of database: 43,553,954
effective search space: 2177697700
effective search space used: 2177697700
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC139708.3