BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139601.8 - phase: 0
(268 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal pro... 33 0.73
CAPP_BRAJA (Q89R17) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 33 0.95
SMF_HUMAN (Q12766) SMF protein (Fragment) 31 2.8
POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal pro... 31 3.6
POLG_BVDVC (Q96662) Genome polyprotein [Contains: N-terminal pro... 31 3.6
YWLC_BACSU (P39153) Hypothetical protein ywlC 30 6.2
UPPS_WOLSU (Q7M7V7) Undecaprenyl pyrophosphate synthetase (EC 2.... 30 6.2
RRS1_CAEEL (Q9XVT0) Ribosome biogenesis regulatory protein homolog 30 6.2
CLPX_HELHP (Q7VGY5) ATP-dependent Clp protease ATP-binding subun... 30 6.2
>POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal protease
(EC 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein
C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein
E1 (gp33); Envelope glycoprotein E2 (gp55); Protein P7;
Nonstructural p
Length = 3988
Score = 33.1 bits (74), Expect = 0.73
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 70 LLLETRVPSIRKSSVAEGLTVEGILEDWFKLKPIVMEEWNENRDDLIDLFGKVRDDW 126
L++E R I+ L + ++ +W K +P+V+ + E + L ++F KVR +W
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>CAPP_BRAJA (Q89R17) Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCase) (PEPC)
Length = 932
Score = 32.7 bits (73), Expect = 0.95
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 29 KLRWPDLFGSVDSSTEDWIVEQMIKVRPVVETGYETLLLVRLLLETRVPSIRKSSVAEGL 88
+L P +G ++ E WI E K P ++ Y+ R+LL + KSS+A
Sbjct: 775 RLMLPGWYG-FGTAVEQWIAEHPDKGMPFLKELYKEWPFFRMLLSNMDMVLAKSSIAIAS 833
Query: 89 TVEGILEDWFKLKPI---VMEEWNENRDDLIDLFGKVR 123
++ D + I + EW+ + L+D+ G+ R
Sbjct: 834 RYAELVPDEALREKIFGRIRREWHSCIETLLDIMGQDR 871
>SMF_HUMAN (Q12766) SMF protein (Fragment)
Length = 1435
Score = 31.2 bits (69), Expect = 2.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 8 DFDGVLCDTCG-----------ETAISALKAAKLRWPDLFGSVDSSTEDW 46
D++ ++C CG E + ALK+ + WP+ GS + + ED+
Sbjct: 1021 DYNDMICGICGVAPKVEMAQRSEENVLALKSVEFTWPEFLGSNEVNVEDF 1070
>POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal protease
(EC 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein
C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein
E1 (gp33); Envelope glycoprotein E2 (gp55); Protein P7;
Nonstructural p
Length = 3898
Score = 30.8 bits (68), Expect = 3.6
Identities = 12/39 (30%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Query: 88 LTVEGILEDWFKLKPIVMEEWNENRDDLIDLFGKVRDDW 126
L + ++ +W K +P+V+ + E + L ++F KVR +W
Sbjct: 3475 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3512
>POLG_BVDVC (Q96662) Genome polyprotein [Contains: N-terminal protease
(EC 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein
C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein
E1 (gp33); Envelope glycoprotein E2 (gp55); Protein P7;
Nonstructural p
Length = 3907
Score = 30.8 bits (68), Expect = 3.6
Identities = 12/39 (30%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Query: 88 LTVEGILEDWFKLKPIVMEEWNENRDDLIDLFGKVRDDW 126
L + ++ +W K +P+V+ + E + L ++F KVR +W
Sbjct: 3484 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3521
>YWLC_BACSU (P39153) Hypothetical protein ywlC
Length = 346
Score = 30.0 bits (66), Expect = 6.2
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 166 ADALLRELAGITIPPERIYGLGTGPK-VETLKKLQK---MPEHQGLTLHFVE 213
A ALLRE + P E +YGLG K + +KK+ + P L +H +
Sbjct: 24 AAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75
>UPPS_WOLSU (Q7M7V7) Undecaprenyl pyrophosphate synthetase (EC
2.5.1.31) (UPP synthetase)
(Di-trans-poly-cis-decaprenylcistransferase)
(Undecaprenyl diphosphate synthase) (UDS)
Length = 228
Score = 30.0 bits (66), Expect = 6.2
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 106 EEWNENRDDLIDLFGKVRDDWLENDFAGWIQGNRFYPGVADALRFASSKVYIVTTKQGRF 165
E W + + +D ++ D+L+ + +++ N + + D RF+S + + T +
Sbjct: 62 ENWKRPKTE-VDFLMRLLSDYLKKEAEVYLKNNIRFKAIGDLSRFSSRLLDEIETLTQKS 120
Query: 166 ADALLRELAGITIPPERIYGLGTGPKVETLKKLQKMPE 203
A +G+T ++ L G K E ++ QKM E
Sbjct: 121 ASC-----SGLT----QVLALNYGSKDEIIRATQKMIE 149
>RRS1_CAEEL (Q9XVT0) Ribosome biogenesis regulatory protein homolog
Length = 333
Score = 30.0 bits (66), Expect = 6.2
Identities = 21/82 (25%), Positives = 38/82 (45%), Gaps = 7/82 (8%)
Query: 148 LRFASSKVYIVTTKQGRFADALLRELAGITIPPERIYGLG----TGPKVETLKKLQKMPE 203
+RFA + + T G+F + L E A + +R + +G K L+ LQ+M
Sbjct: 202 VRFAVDRAKLATASAGKFQEGLKGEKANVKTGKKRKFEANEAPVSGEKERALQILQRMKS 261
Query: 204 HQGLTLHFVEDRIAALKNVIKE 225
+ VE++ AA+ ++E
Sbjct: 262 KKA---KIVEEKAAAVAGPLRE 280
>CLPX_HELHP (Q7VGY5) ATP-dependent Clp protease ATP-binding subunit
clpX
Length = 426
Score = 30.0 bits (66), Expect = 6.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 178 IPPERIYGLGTGPKVETLKKLQKMPEHQGLTLHFVEDRIAAL 219
I E + + T PK +K+ QK+ E G TLHF +D I ++
Sbjct: 322 ISKEAMVEILTKPKNALIKQYQKIFEIDGATLHFEKDAIESI 363
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,079,630
Number of Sequences: 164201
Number of extensions: 1351066
Number of successful extensions: 3594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3592
Number of HSP's gapped (non-prelim): 9
length of query: 268
length of database: 59,974,054
effective HSP length: 108
effective length of query: 160
effective length of database: 42,240,346
effective search space: 6758455360
effective search space used: 6758455360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC139601.8