BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.2 + phase: 0
(98 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 194 2e-50
CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloropl... 194 4e-50
CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloropl... 194 4e-50
CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 194 4e-50
CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloropl... 193 7e-50
CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 193 7e-50
CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloropl... 193 7e-50
CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 193 7e-50
CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 193 7e-50
CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 192 1e-49
CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 192 1e-49
CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 192 1e-49
CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 192 2e-49
CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop... 192 2e-49
CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ... 192 2e-49
CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 192 2e-49
CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 191 2e-49
CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 191 2e-49
CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 191 3e-49
CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII ty... 191 4e-49
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast
precursor (LHCII type I CAB-3C) (LHCP)
Length = 267
Score = 194 bits (494), Expect = 2e-50
Identities = 93/98 (94%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 229
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 124
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast
precursor (LHCII type I CAB-3B) (LHCP) (Fragments)
Length = 267
Score = 194 bits (492), Expect = 4e-50
Identities = 93/98 (94%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADHIADPVN+NAWAFATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast
precursor (LHCII type I CAB-3A) (LHCP) (Fragments)
Length = 267
Score = 194 bits (492), Expect = 4e-50
Identities = 93/98 (94%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADHIADPVN+NAWAFATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast
precursor (LHCII type I CAB-25) (LHCP)
Length = 266
Score = 194 bits (492), Expect = 4e-50
Identities = 91/98 (92%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYR+A GPLGEV+DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 169 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 228
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 229 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
Score = 27.7 bits (60), Expect = 5.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G + G
Sbjct: 74 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNG 123
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast
precursor (LHCII type I CAB-1C) (LHCP) (Fragments)
Length = 265
Score = 193 bits (490), Expect = 7e-50
Identities = 92/98 (93%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast
precursor (LHCII type I CAB-1B) (LHCP)
Length = 265
Score = 193 bits (490), Expect = 7e-50
Identities = 92/98 (93%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 122
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast
precursor (LHCII type I CAB-1A) (LHCP) (Fragments)
Length = 265
Score = 193 bits (490), Expect = 7e-50
Identities = 92/98 (93%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast
precursor (LHCII type I CAB-AB80) (LHCP)
Length = 269
Score = 193 bits (490), Expect = 7e-50
Identities = 92/98 (93%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 172 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 231
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAW++ATNFVPGK
Sbjct: 232 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE F++ + E+ + R AM G +++ G
Sbjct: 77 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNG 126
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast
precursor (LHCII type I CAB-1) (LHCP)
Length = 262
Score = 193 bits (490), Expect = 7e-50
Identities = 93/97 (95%), Positives = 95/97 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 165 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 224
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPG 97
FVQAIVT KGPLENLADHIADPVN+NAWA+ATNFVPG
Sbjct: 225 FVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G +++ G
Sbjct: 70 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 119
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast
precursor (LHCII type I CAB) (LHCP)
Length = 267
Score = 192 bits (488), Expect = 1e-49
Identities = 92/98 (93%), Positives = 95/98 (96%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 229
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAW FATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 124
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast
precursor (LHCII type I CAB-2) (LHCP)
Length = 263
Score = 192 bits (488), Expect = 1e-49
Identities = 91/98 (92%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGG+FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 166 MGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 225
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 226 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
Score = 31.6 bits (70), Expect = 0.36
Identities = 21/65 (32%), Positives = 28/65 (42%), Gaps = 6/65 (9%)
Query: 12 GPLGEVVDPLYPGGSF------DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 65
GPL P Y G F D GL+ DPE FA+ + E+ + R AM G +
Sbjct: 56 GPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPEL 115
Query: 66 VTEKG 70
+ G
Sbjct: 116 LARNG 120
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast
precursor (LHCII type I CAB-13) (LHCP)
Length = 266
Score = 192 bits (488), Expect = 1e-49
Identities = 90/98 (91%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYR+A GPLGEV+DPLYPGGSFDPLGLADDPEAFAEL+VKE+KNGRLAMFSMFGF
Sbjct: 169 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGF 228
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 229 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast
precursor (LHCII type I CAB-8)
Length = 268
Score = 192 bits (487), Expect = 2e-49
Identities = 91/98 (92%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 171 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 230
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH++DPVN+NAW++ATNFVPGK
Sbjct: 231 FVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE F++ + E+ + R AM G +++ G
Sbjct: 76 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNG 125
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R,
chloroplast precursor (LHCII type I CAB-91R) (LHCP)
Length = 267
Score = 192 bits (487), Expect = 2e-49
Identities = 90/98 (91%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYR+A GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 229
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAW++ATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type I
(CAB) (LHCP) (Fragment)
Length = 206
Score = 192 bits (487), Expect = 2e-49
Identities = 91/98 (92%), Positives = 95/98 (96%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 109 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 168
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 169 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
Score = 27.7 bits (60), Expect = 5.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + AM G +++ G
Sbjct: 14 FPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNG 63
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type
I, chloroplast precursor (CAB) (LHCP) (Fragment)
Length = 255
Score = 192 bits (487), Expect = 2e-49
Identities = 91/98 (92%), Positives = 95/98 (96%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 158 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 217
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 218 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G +++ G
Sbjct: 63 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 112
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast
precursor (LHCII type I CAB-40) (LHCP)
Length = 267
Score = 191 bits (486), Expect = 2e-49
Identities = 90/98 (91%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYR+A GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 124
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast
precursor (LHCII type I CAB-21) (LHCP)
Length = 265
Score = 191 bits (486), Expect = 2e-49
Identities = 90/98 (91%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYR+A GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 168 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 122
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast
precursor (LHCII type I CAB-2) (LHCP)
Length = 264
Score = 191 bits (485), Expect = 3e-49
Identities = 91/98 (92%), Positives = 95/98 (96%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYR+A GPLGEVVDPLYPGGSFDPLGLADD EAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 167 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGF 226
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 227 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
Score = 32.0 bits (71), Expect = 0.28
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+PG +D GL+ DPE FA+ + E+ +GR AM G ++ G
Sbjct: 72 FPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNG 121
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type
I CAB-1D) (LHCP) (Fragment)
Length = 116
Score = 191 bits (484), Expect = 4e-49
Identities = 90/98 (91%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEVVDPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 19 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 78
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAW++ATNFVPGK
Sbjct: 79 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.141 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,917,086
Number of Sequences: 164201
Number of extensions: 490274
Number of successful extensions: 1066
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 181
length of query: 98
length of database: 59,974,054
effective HSP length: 74
effective length of query: 24
effective length of database: 47,823,180
effective search space: 1147756320
effective search space used: 1147756320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC139600.2