BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139600.10 + phase: 0 
         (81 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CY32_DESDN (P38554) Cytochrome c3, 26 kDa                              28  3.2
IF2B_METMA (Q8PWV1) Probable translation initiation factor 2 bet...    28  4.2
IF2B_METAC (Q8TU91) Probable translation initiation factor 2 bet...    28  4.2
METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13) (5-methylt...    27  7.2
DY1A_CHLRE (Q9SMH3) Dynein 1-alpha heavy chain, flagellar inner ...    27  7.2

>CY32_DESDN (P38554) Cytochrome c3, 26 kDa
          Length = 111

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 20 KYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHRNFHKR 65
          K G+   NHA+++   A   C   +P T    +C   GCH N  +R
Sbjct: 22 KKGDVTFNHASHMD-IACQQCHHTVPDTYTIESCMTEGCHDNIKER 66


>IF2B_METMA (Q8PWV1) Probable translation initiation factor 2 beta
           subunit (eIF-2-beta)
          Length = 202

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 13/31 (41%), Positives = 16/31 (50%)

Query: 51  LTCAACGCHRNFHKREVEVVSESSSPHSNGT 81
           L C+ACG HR   KR+V  V    +    GT
Sbjct: 121 LKCSACGAHRPVKKRKVSNVVVREAIEEGGT 151


>IF2B_METAC (Q8TU91) Probable translation initiation factor 2 beta
           subunit (eIF-2-beta)
          Length = 202

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 13/31 (41%), Positives = 16/31 (50%)

Query: 51  LTCAACGCHRNFHKREVEVVSESSSPHSNGT 81
           L C+ACG HR   KR+V  V    +    GT
Sbjct: 121 LKCSACGAHRPVKKRKVSNVVVRDAIEEGGT 151


>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)
          (5-methyltetrahydrofolate--homocysteine
          methyltransferase) (Methionine synthase, vitamin-B12
          dependent isozyme) (MS)
          Length = 1195

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 19/68 (27%), Positives = 29/68 (41%), Gaps = 10/68 (14%)

Query: 10 RSEDPQRSVVKYG-------ECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHRNF 62
          R   P R V+ +        + Q   AA+ GG   +GC E++  T      A    HR F
Sbjct: 8  RIHSPDRPVLVFDGAMGTNLQVQNLTAADFGGAEYEGCNEYLVHTKPE---AVATVHRAF 64

Query: 63 HKREVEVV 70
          ++   +VV
Sbjct: 65 YEAGADVV 72


>DY1A_CHLRE (Q9SMH3) Dynein 1-alpha heavy chain, flagellar inner arm
            I1 complex (1-alpha DHC) (Dynein 1, subspecies f)
          Length = 4625

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (55%)

Query: 48   NGSLTCAACGCHRNFHKREVEVVSESSSPHSN 79
            +G + C A GC   F++ E EV+S  SS   N
Sbjct: 1998 SGLVQCGAWGCFDEFNRIEAEVLSVVSSQIKN 2029


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.316    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,551,101
Number of Sequences: 164201
Number of extensions: 315894
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 59,974,054
effective HSP length: 57
effective length of query: 24
effective length of database: 50,614,597
effective search space: 1214750328
effective search space used: 1214750328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)