BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139354.3 + phase: 0
(282 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YBE1_SCHPO (O42980) Putative thiol protease C17D11.01 (EC 3.4.22.-) 34 0.46
PO12_BRARE (P56224) POU domain protein 12 (POU domain protein zp... 33 0.60
CND2_XENLA (O13067) Condensin subunit 2 (Chromosome-associated p... 33 0.60
HUNB_DROSO (O46258) Hunchback protein (Fragments) 33 0.78
HUNB_DROMM (O46248) Hunchback protein (Fragments) 33 0.78
CCAA_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel a... 33 0.78
ZP23_BRARE (P79745) POU domain protein ZP-23 33 1.0
PUR7_STAAW (P65892) Phosphoribosylaminoimidazole-succinocarboxam... 33 1.0
PUR7_STAAN (P99064) Phosphoribosylaminoimidazole-succinocarboxam... 33 1.0
PUR7_STAAM (P65891) Phosphoribosylaminoimidazole-succinocarboxam... 33 1.0
POU1_BRARE (P31366) POU domain protein 1 (ZFPOU1) 33 1.0
CCT1_PANTR (Q8HXN7) Cyclin T1 (Cyclin T) (CycT1) 33 1.0
CCT1_HUMAN (O60563) Cyclin T1 (Cyclin T) (CycT1) 33 1.0
CCAA_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel a... 33 1.0
YDOF_SCHPO (O13734) Hypothetical protein C15A10.15 in chromosome I 32 1.3
CCT1_HORSE (Q9XT26) Cyclin T1 (Cyclin T) (CycT1) 32 1.3
CCT1_MOUSE (Q9QWV9) Cyclin T1 (Cyclin T) (CycT1) 32 1.7
CAR2_DICDI (P34907) Cyclic AMP receptor 2 32 1.7
ORC3_YEAST (P54790) Origin recognition complex subunit 3 (Origin... 32 2.3
HM8_XENLA (P14837) Homeobox protein 8 (XlHbox-8) 32 2.3
>YBE1_SCHPO (O42980) Putative thiol protease C17D11.01 (EC 3.4.22.-)
Length = 420
Score = 33.9 bits (76), Expect = 0.46
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 25 EYHHHHHRHHDPVVTHDD----KYDDKDNNCPSDQD 56
E HHHHH HH +HDD + K N+ PS +
Sbjct: 297 EGHHHHHHHHHHHHSHDDDPSSPAEKKQNHVPSPSE 332
>PO12_BRARE (P56224) POU domain protein 12 (POU domain protein
zp-12) (Class III POU domain protein taichi)
(Brain-specific homeobox/POU domain protein 1.1)
(Brn-1.1)
Length = 437
Score = 33.5 bits (75), Expect = 0.60
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 25 EYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKLENRRLR 68
++ HHHH H V D + D+D D + A + + RR++
Sbjct: 219 QHPHHHHHQHHAGVNSHDSHSDEDTPTSDDLEQFAKQFKQRRIK 262
>CND2_XENLA (O13067) Condensin subunit 2 (Chromosome-associated
protein H) (Chromosome assembly protein XCAP-H) (Barren
homolog)
Length = 699
Score = 33.5 bits (75), Expect = 0.60
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 28/220 (12%)
Query: 50 NCPSDQDLEALKLENRRLRNLLDQNLKLLNN----LSESNSFLSNCPPDLHVRLAATVRS 105
N S+ D KL RR+ ++D L N+ +S + S ++ P L +L T S
Sbjct: 41 NFTSNDDERERKL--RRMSRVIDLQLSNANSPATAISPAQSRGADTPTSLLPKLNNTQIS 98
Query: 106 DEYLTRLKVLQEETASGGNQFPFKEATEVDYQSADILINVDSKEPSWWVWV--------- 156
D Y T +K+ QE + N F +DY DIL + DS+ ++ V
Sbjct: 99 DHYSTCIKLSQENKITTKNAFGLH---LIDYM-GDILKHKDSELTNFKVAAGTLDASAKI 154
Query: 157 -ADETDPIN---FEECSGIDDESYLIISEEHVVDGVANFMARCIMSNPKARNMSPEELQN 212
A D ++ ++ G+ ES E+ R NPK R S + ++
Sbjct: 155 YAVRVDAVHADVYKVLGGLGKESQATEDTENQETDTGPQDGR---KNPKRRKCSYKTIER 211
Query: 213 NLSKAFAGTSKLEKVLD--IWAAGKLFYALSTWGLALAGL 250
NL+ ++ + +D A F ST G+ L+ L
Sbjct: 212 NLNSINRSETERKSEIDPLFQKAAASFDEFSTAGVFLSTL 251
>HUNB_DROSO (O46258) Hunchback protein (Fragments)
Length = 159
Score = 33.1 bits (74), Expect = 0.78
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Query: 17 ADVAWTAVEYHHHHHRHHDPVVTHDDKYDDKDN-NCPSDQDLEALKLE 63
A++ + +H+HHH HH H +++ N + P L L+LE
Sbjct: 8 ANIKQEPISHHNHHHHHHHGHHQHQQRHNSNSNASSPHQSPLPNLQLE 55
>HUNB_DROMM (O46248) Hunchback protein (Fragments)
Length = 158
Score = 33.1 bits (74), Expect = 0.78
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Query: 17 ADVAWTAVEYHHHHHRHHDPVVTHDDKYDDKDN-NCPSDQDLEALKLE 63
A++ + +H+HHH HH H +++ N + P L L+LE
Sbjct: 8 ANIKQEPISHHNHHHHHHHGHHQHQQRHNSNSNASSPHQSPLPNLQLE 55
>CCAA_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel
alpha-1A subunit (Voltage-gated calcium channel alpha
subunit Cav2.1) (Calcium channel, L type, alpha-1
polypeptide isoform 4) (Brain calcium channel I) (BI)
Length = 2505
Score = 33.1 bits (74), Expect = 0.78
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 25 EYHHHHHRHHDPVVTHDDKY 44
++HHHHH HH P D+Y
Sbjct: 2210 QHHHHHHHHHHPPPPDKDRY 2229
>ZP23_BRARE (P79745) POU domain protein ZP-23
Length = 443
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 26 YHHHHHRH------HDPVVTHDDKYDDKDNNCPSDQDLE--ALKLENRRLR 68
+HHHHH+H H V +HD D + P+ DLE A + + RR++
Sbjct: 212 HHHHHHQHQHHQQAHHGVNSHD---PHSDEDTPTSDDLEHFAKQFKQRRIK 259
>PUR7_STAAW (P65892) Phosphoribosylaminoimidazole-succinocarboxamide
synthase (EC 6.3.2.6) (SAICAR synthetase)
Length = 234
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 24 VEYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKLENRRLRNLLDQNLKLLN 79
VE+ + + +DP++T D K N SD+D+E LK + ++ N+L Q + +N
Sbjct: 115 VEFFYKNDALNDPLITDDHV---KLLNIASDEDIEILKSKALKINNVLKQLMDAMN 167
>PUR7_STAAN (P99064) Phosphoribosylaminoimidazole-succinocarboxamide
synthase (EC 6.3.2.6) (SAICAR synthetase)
Length = 234
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 24 VEYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKLENRRLRNLLDQNLKLLN 79
VE+ + + +DP++T D K N SD+D+E LK + ++ N+L Q + +N
Sbjct: 115 VEFFYKNDALNDPLITDDHV---KLLNIASDEDIEILKSKALKINNVLKQLMDAMN 167
>PUR7_STAAM (P65891) Phosphoribosylaminoimidazole-succinocarboxamide
synthase (EC 6.3.2.6) (SAICAR synthetase)
Length = 234
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 24 VEYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKLENRRLRNLLDQNLKLLN 79
VE+ + + +DP++T D K N SD+D+E LK + ++ N+L Q + +N
Sbjct: 115 VEFFYKNDALNDPLITDDHV---KLLNIASDEDIEILKSKALKINNVLKQLMDAMN 167
>POU1_BRARE (P31366) POU domain protein 1 (ZFPOU1)
Length = 425
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 26 YHHHHHRH------HDPVVTHDDKYDDKDNNCPSDQDLE--ALKLENRRLR 68
+HHHHH+H H V +HD D + P+ DLE A + + RR++
Sbjct: 212 HHHHHHQHQHHQQAHHGVNSHD---PHSDEDTPTSDDLEHFAKQFKQRRIK 259
>CCT1_PANTR (Q8HXN7) Cyclin T1 (Cyclin T) (CycT1)
Length = 725
Score = 32.7 bits (73), Expect = 1.0
Identities = 25/92 (27%), Positives = 36/92 (38%), Gaps = 7/92 (7%)
Query: 4 HNAVEMAKTVL-EVADVAWTAVEYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKL 62
HN+VE + T E + T HHHHH HH +H N P D
Sbjct: 492 HNSVEDSVTKSREHKEKHKTHPSNHHHHHNHHSHKHSHSQLPVGTGNKRPGDPK------ 545
Query: 63 ENRRLRNLLDQNLKLLNNLSESNSFLSNCPPD 94
+ + NL + L ++ S S+S P +
Sbjct: 546 HSSQTSNLAHKTYSLSSSFSSSSSTRKRGPSE 577
>CCT1_HUMAN (O60563) Cyclin T1 (Cyclin T) (CycT1)
Length = 726
Score = 32.7 bits (73), Expect = 1.0
Identities = 25/92 (27%), Positives = 36/92 (38%), Gaps = 7/92 (7%)
Query: 4 HNAVEMAKTVL-EVADVAWTAVEYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKL 62
HN+VE + T E + T HHHHH HH +H N P D
Sbjct: 493 HNSVEDSVTKSREHKEKHKTHPSNHHHHHNHHSHKHSHSQLPVGTGNKRPGDPK------ 546
Query: 63 ENRRLRNLLDQNLKLLNNLSESNSFLSNCPPD 94
+ + NL + L ++ S S+S P +
Sbjct: 547 HSSQTSNLAHKTYSLSSSFSSSSSTRKRGPSE 578
>CCAA_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel
alpha-1A subunit (Voltage-gated calcium channel alpha
subunit Cav2.1) (Calcium channel, L type, alpha-1
polypeptide isoform 4) (Brain calcium channel I) (BI)
Length = 2164
Score = 32.7 bits (73), Expect = 1.0
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 26 YHHHHHRHHDPVVTHDDKY 44
+HHHHH HH P D+Y
Sbjct: 2114 HHHHHHHHHHPPAPDRDRY 2132
>YDOF_SCHPO (O13734) Hypothetical protein C15A10.15 in chromosome I
Length = 647
Score = 32.3 bits (72), Expect = 1.3
Identities = 32/129 (24%), Positives = 57/129 (43%), Gaps = 13/129 (10%)
Query: 57 LEALKLENRRLRNLLDQNLKLLN---NLSESNSFLSNCPPDLHVRLAATVR-----SDEY 108
++ L+LEN RL L +N+ L NL E + N + +LAA + +D +
Sbjct: 35 IKELQLENERL---LSENIDLRTTAINLEEQLETVQNENEENKTKLAALLNRFHEETDNF 91
Query: 109 LTRLKVLQEETASGGNQFPFKEATEVDYQSADILINVDSKEPSWWVWVADETDPINFEEC 168
L++L + Q+E A +VD S D ++ +S + ++
Sbjct: 92 LSKLSLCQQEIQDTFKPVEANLAYDVDTDSED--LDEESVVKDTEEIIEQAQHDVSLRNL 149
Query: 169 SGIDDESYL 177
SGI+DE+ +
Sbjct: 150 SGIEDENII 158
>CCT1_HORSE (Q9XT26) Cyclin T1 (Cyclin T) (CycT1)
Length = 727
Score = 32.3 bits (72), Expect = 1.3
Identities = 18/68 (26%), Positives = 26/68 (37%), Gaps = 6/68 (8%)
Query: 27 HHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKLENRRLRNLLDQNLKLLNNLSESNS 86
HHHHH HH +H N P D + + L + L ++ S S+S
Sbjct: 519 HHHHHNHHSHKHSHSQLPAGTGNKRPGDPK------HSSQTSTLAHKTYSLSSSFSSSSS 572
Query: 87 FLSNCPPD 94
PP+
Sbjct: 573 SRKRGPPE 580
>CCT1_MOUSE (Q9QWV9) Cyclin T1 (Cyclin T) (CycT1)
Length = 724
Score = 32.0 bits (71), Expect = 1.7
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 4 HNAVEMAKTVL-EVADVAWTAVEYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKL 62
HN++E + T E + T HHHHH HH +H + PSD
Sbjct: 492 HNSIEDSVTKSREHKEKQRTHPSNHHHHHNHHSHRHSHLQLPAGPVSKRPSDPK------ 545
Query: 63 ENRRLRNLLDQNLKLLNNLSESNSFLSNCPPD 94
+ + L + L + LS S+S PP+
Sbjct: 546 HSSQTSTLAHKTYSLSSTLSSSSSTRKRGPPE 577
>CAR2_DICDI (P34907) Cyclic AMP receptor 2
Length = 375
Score = 32.0 bits (71), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Query: 26 YHHHHHRHHDPVVTHDDKYDDKDNN 50
+HHHHH HH H + Y++ +NN
Sbjct: 346 HHHHHHHHH-----HHNHYNNNNNN 365
>ORC3_YEAST (P54790) Origin recognition complex subunit 3 (Origin
recognition complex protein 62 kDa subunit)
Length = 616
Score = 31.6 bits (70), Expect = 2.3
Identities = 30/117 (25%), Positives = 53/117 (44%), Gaps = 15/117 (12%)
Query: 128 FKEATEVDYQSADILINVDSKEPSWWVWV---------ADETDPINFEECSGIDDESYLI 178
F + VD+ + D L + S+ P++ +V ADE + + G+++
Sbjct: 337 FIDPVNVDFLNDDYL-KILSRCPTFMFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEF 395
Query: 179 ISEEHVVDGVANFMARCIMSNPKARNMSPEELQNNLSKAFAGTSKLEKVLDIWAAGK 235
+ E+ ++G A F+AR + N + EL +NL KL+ LD W+A K
Sbjct: 396 LVRENPINGHAKFVARFLEEELNITNFNLIELYHNLL-----IGKLDSYLDRWSACK 447
>HM8_XENLA (P14837) Homeobox protein 8 (XlHbox-8)
Length = 271
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 24 VEYHHHHHRHHDPVVTHDDKYDDKDNNCPSDQDLEALKLENRRLRNLL 71
+ +HH+HH HH P + H + P D E+ LE R R LL
Sbjct: 78 LHHHHYHHHHHHPGIPH------PHHQMPFPDDNESGTLEERN-RTLL 118
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,326,238
Number of Sequences: 164201
Number of extensions: 1321357
Number of successful extensions: 6470
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 6070
Number of HSP's gapped (non-prelim): 214
length of query: 282
length of database: 59,974,054
effective HSP length: 109
effective length of query: 173
effective length of database: 42,076,145
effective search space: 7279173085
effective search space used: 7279173085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Medicago: description of AC139354.3