BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139343.2 + phase: 0 /pseudo
(443 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 120 5e-27
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 88 4e-17
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 45 4e-04
YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein 40 0.009
Y475_STRMU (Q8DVK7) Hypothetical UPF0144 protein SMU.475 36 0.23
S230_PLAFO (Q08372) Transmission-blocking target antigen S230 pr... 36 0.23
TFC3_YEAST (P34111) Transcription factor tau 138 kDa subunit (TF... 34 0.66
RRPO_TACV (P20430) RNA polymerase (EC 2.7.7.48) 34 0.66
MYS2_SCHPO (Q9USI6) Myosin type II heavy chain 1 34 0.86
EEA1_HUMAN (Q15075) Early endosome antigen 1 (Endosome-associate... 33 1.1
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 33 1.9
SMC4_YEAST (Q12267) Structural maintenance of chromosome 4 33 1.9
GAG_MPMV (P07567) Gag polyprotein [Contains: Core protein p10; C... 32 3.3
YMJ3_YEAST (Q04500) Hypothetical 103.0 kDa protein in RAD10-PRS4... 32 4.3
GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote... 32 4.3
GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote... 32 4.3
CUP_DROME (Q9VMA3) Cup protein (Oskar ribonucleoprotein complex ... 32 4.3
VP2_BTV1S (P32508) Outer capsid protein VP2 31 5.6
POT1_SCHPO (O13988) Protection of telomeres protein 1 31 5.6
GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; ... 31 5.6
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 120 bits (302), Expect = 5e-27
Identities = 99/405 (24%), Positives = 173/405 (42%), Gaps = 35/405 (8%)
Query: 44 FKGQN-FRRWNERVFTLLDVHGVASVLTDVKPDEAKSDAKQIEKWNNANKVCRHTILSTI 102
F G N F W R+ LL G+ VL DV D K D + E W + ++ I +
Sbjct: 11 FNGDNGFSTWQRRMRDLLIQQGLHKVL-DV--DSKKPDTMKAEDWADLDERAASAIRLHL 67
Query: 103 SDALFDVYCSYKVAKDIWDNMNVKYTAEEATKQKFVVGNYL*WQMKEDKEIKVQINEYHQ 162
SD + + A+ IW + Y ++ T + ++ M E +N ++
Sbjct: 68 SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNG 127
Query: 163 LIEELKAENIILPDVFVAAALVEKLRSSWDDYKQQLKHKHKQMSLNDLIRHIIIEDTSRK 222
LI +L + + + A L+ L SS+D+ + H + L D+ +++ + RK
Sbjct: 128 LITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRK 187
Query: 223 ECGAARAKALESRANLIQNNARKQQRYENKSDH--ALKVTNPNFKANLGECYVCGKKGHK 280
+ + +A + + R QR N A + K+ + CY C + GH
Sbjct: 188 K------PENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHF 241
Query: 281 AYHCRYRKVNGQPPKPKANLTQGDDKKYDD---------DDVIAAVISK---VHLVNDVQ 328
C P P+ + +K DD D+V+ + + +HL
Sbjct: 242 KRDC---------PNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPES 292
Query: 329 KWVVDSGATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLAL 388
+WVVD+ A+ H R+ F Y++ D V +G++ + + G G + +K G TL L
Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVA--GDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVL 350
Query: 389 SDVLNVPTIRTNLISVALLNKVGVKVSFESDKMVMSKNNVFVGNG 433
DV +VP +R NLIS L++ G + F + K ++K ++ + G
Sbjct: 351 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKG 395
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 88.2 bits (217), Expect = 4e-17
Identities = 83/394 (21%), Positives = 164/394 (41%), Gaps = 18/394 (4%)
Query: 41 IEVFKGQNFRRWNERVFTLLDVHGVASVLTDVKPDEAKSDAKQIEKWNNANKVCRHTILS 100
I+ F G+ + W R+ LL V V+ + P+E + W A + + TI+
Sbjct: 8 IKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVD------DSWKKAERCAKSTIIE 61
Query: 101 TISDALFDVYCSYKVAKDIWDNMNVKYTAEEATKQKFVVGNYL*WQMKEDKEIKVQINEY 160
+SD+ + S A+ I +N++ Y + Q + L ++ + + + +
Sbjct: 62 YLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIF 121
Query: 161 HQLIEELKAENIILPDVFVAAALVEKLRSSWDDYKQQLKH-KHKQMSLNDLIRHIIIEDT 219
+LI EL A + ++ + L+ L S +D ++ + ++L + ++ ++
Sbjct: 122 DELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEI 181
Query: 220 SRKECGAARAKALESRANLIQNNARKQQRYENKSDHALKVTNPNFKANLGECYVCGKKGH 279
K +K + + NN K ++N+ K+ N K + +C+ CG++GH
Sbjct: 182 KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKV-KCHHCGREGH 240
Query: 280 KAYHC-RYRKVNGQPPKPKANLTQGDDKKYDDDDVIAAVISKVH--LVNDVQKWVVDSGA 336
C Y+++ K Q IA ++ +V+ V D +V+DSGA
Sbjct: 241 IKKDCFHYKRILNNKNKENEKQVQ-----TATSHGIAFMVKEVNNTSVMDNCGFVLDSGA 295
Query: 337 TRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLALSDVLNVPT 396
+ H+ +T + V +G I++L + + L DVL
Sbjct: 296 SDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRG--IVRLRNDHEITLEDVLFCKE 353
Query: 397 IRTNLISVALLNKVGVKVSFESDKMVMSKNNVFV 430
NL+SV L + G+ + F+ + +SKN + V
Sbjct: 354 AAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMV 387
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 45.1 bits (105), Expect = 4e-04
Identities = 24/84 (28%), Positives = 44/84 (51%), Gaps = 10/84 (11%)
Query: 243 ARKQQRYENKS-DHALKVTNPNFKANLGECYVCGKKGHKAYHCRYRKVNGQ--------P 293
ARK +Y K+ D+ ++VT ++ +CY+CG++GH A CR + + Q
Sbjct: 853 ARKATKYTGKAHDNHIRVTKAKYQRKC-KCYICGQEGHYANQCRNKHKDQQRVAILQSLD 911
Query: 294 PKPKANLTQGDDKKYDDDDVIAAV 317
K + DDK+ +DD++ + +
Sbjct: 912 LKENEEVVSADDKEEEDDEIFSVL 935
>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
Length = 146
Score = 40.4 bits (93), Expect = 0.009
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 329 KWVVDSGATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGK---- 384
+W+ D+G T H+C R F+S+ SR V G G I + SG
Sbjct: 78 EWIFDTGCTSHMCHDRSIFSSFTR-----------SSRKDFVRGVGGSIPIMGSGTVNIG 126
Query: 385 TLALSDVLNVPTIRTNLISV 404
T+ L DV VP + NLISV
Sbjct: 127 TVQLHDVSYVPDLPVNLISV 146
>Y475_STRMU (Q8DVK7) Hypothetical UPF0144 protein SMU.475
Length = 535
Score = 35.8 bits (81), Expect = 0.23
Identities = 54/215 (25%), Positives = 86/215 (39%), Gaps = 29/215 (13%)
Query: 152 EIKVQINEYHQLIE-ELKAENIILPDVFVAAALVEKLRSSWDDYKQQLKHKH-----KQM 205
E K + +Y + IE E K+E L + A L E+ +S D + L K K+
Sbjct: 76 EAKEEARKYREEIEKEFKSERQELKQM--DARLTERA-ASLDRKDENLSSKEQLLDSKEQ 132
Query: 206 SLNDLIRHIIIEDTSRKECGAARAKALESRANLIQNNARKQQRYENKSDHALKVTNPNFK 265
SL+D RHI + K+ +A+ LE A+L Q AR E + + A + N +
Sbjct: 133 SLSDKSRHIDERELQVKQLEVKKAEELEKIASLSQEQARGIILSETEKNLAHDIANRIKE 192
Query: 266 ANLGECYVCGKKGHKAYHCRYRKVNGQPPKPKANLTQGDDKKYDDDDVIAAVISKVHLVN 325
A R++ + K +L ++ D V I+ VHL +
Sbjct: 193 AE-------------------REIKDRTDKTAKDLLAQAMQRLAGDYVAEQTITTVHLPD 233
Query: 326 DVQKWVVDSGATRHICAKREAFTSYISVGDDEDQV 360
D K + R+I E+ T + DD +V
Sbjct: 234 DSMKGRIIGREGRNI-RTLESLTGIDIIIDDTPEV 267
>S230_PLAFO (Q08372) Transmission-blocking target antigen S230
precursor
Length = 3135
Score = 35.8 bits (81), Expect = 0.23
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 2/69 (2%)
Query: 67 SVLTDVKPDEAKSDAKQIEKWNNANKVCRHTILSTISDALFDVYCS--YKVAKDIWDNMN 124
S + +K DE K+ K I K++ KV I+ TI ++ + + Y + WD +
Sbjct: 2817 STMDKIKIDEKKTIGKDICKYDVTTKVATCEIIDTIDSSVLKEHHTVHYSITLSRWDKLI 2876
Query: 125 VKYTAEEAT 133
+KY E T
Sbjct: 2877 IKYPTNEKT 2885
>TFC3_YEAST (P34111) Transcription factor tau 138 kDa subunit
(TFIIIC 138 kDa subunit)
Length = 1160
Score = 34.3 bits (77), Expect = 0.66
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 145 WQMKEDKEIKVQINEYHQLIEELKAENIILPDVF--------VAAALVEKLRSSWDDYKQ 196
W ++KEIK + Y E K ++ D +++ + ++ S Y +
Sbjct: 830 WTSFDEKEIKRPLFLYKNYEENRKKFTLVRDDTLTHSGNDLAMSSMIQREISSLKKTYTR 889
Query: 197 QLKHKHKQMS-------LNDLIRHIIIED--TSRKECGAARAKALESRANLIQNNARKQQ 247
++ K +S + +IR I+IE T+R E A + ES N+I + A+++Q
Sbjct: 890 KISASTKDLSKSQSDDYIRTVIRSILIESPSTTRNEIEALKNVGNESIDNVIMDMAKEKQ 949
Query: 248 RYENKSDHALKVTNPNFKANLG 269
Y + S T P+ N G
Sbjct: 950 IYLHGSKLECTDTLPDILENRG 971
>RRPO_TACV (P20430) RNA polymerase (EC 2.7.7.48)
Length = 2210
Score = 34.3 bits (77), Expect = 0.66
Identities = 25/80 (31%), Positives = 40/80 (49%), Gaps = 1/80 (1%)
Query: 207 LNDLIRHIIIEDTSRKECGAARAKALESRANLIQNNARKQQRYENKSDHALKVTNPNFKA 266
LN+LIR ED + +C K ++ +L ++Q R ++ S+ V P+ KA
Sbjct: 267 LNNLIRLGKHEDNTTSDCPFCVNKFMDIIYSLTFTALKRQDREKSNSELDQYVVCPHEKA 326
Query: 267 NLGECYVCGK-KGHKAYHCR 285
LG +C K KG K ++ R
Sbjct: 327 YLGVLSICNKIKGLKVFNTR 346
>MYS2_SCHPO (Q9USI6) Myosin type II heavy chain 1
Length = 1526
Score = 33.9 bits (76), Expect = 0.86
Identities = 34/131 (25%), Positives = 62/131 (46%), Gaps = 3/131 (2%)
Query: 130 EEATKQKFVVGNYL*WQMKEDKEIKVQINEYHQLIEELKAENIILPDV--FVAAALVEKL 187
E++ +Q+ + L K ++E I++ ++++ K E +L V L EK+
Sbjct: 1020 EKSIQQEGSLSESLKRVKKLERENSTLISDV-SILKQQKEELSVLKGVQELTINNLEEKV 1078
Query: 188 RSSWDDYKQQLKHKHKQMSLNDLIRHIIIEDTSRKECGAARAKALESRANLIQNNARKQQ 247
D KQ K K + SLND + ++ T KE A + L + +L + K++
Sbjct: 1079 NYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLTKELENKEE 1138
Query: 248 RYENKSDHALK 258
+ +N SD +LK
Sbjct: 1139 KCQNLSDASLK 1149
>EEA1_HUMAN (Q15075) Early endosome antigen 1 (Endosome-associated
protein p162) (Zinc finger FYVE domain containing protein
2)
Length = 1411
Score = 33.5 bits (75), Expect = 1.1
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 97 TILSTISDALFDVYCSYKVAKDIWDNMNVKYTA-----EEATKQ-KFVVGNYL*WQMKED 150
T LST+ D L V S K +K ++ N K A E+ K+ K + + +KE
Sbjct: 853 TELSTVKDKLSKVSDSLKNSKSEFEKENQKGKAAILDLEKTCKELKHQLQVQMENTLKEQ 912
Query: 151 KEIKVQINEYHQLIEELKAENIILPDVFVAAALV--------EKLRSSWDDYKQQLKHKH 202
KE+K + + + +LK E + + + A ++L+ + ++ KQ + K
Sbjct: 913 KELKKSLEKEKEASHQLKLELNSMQEQLIQAQNTLKQNEKEEQQLQGNINELKQSSEQKK 972
Query: 203 KQM-SLNDLIRHIIIEDTSRKE-------CGAARAKALESRANLIQNNARKQQ 247
KQ+ +L ++ +++ T + A A + + +++QNN K Q
Sbjct: 973 KQIEALQGELKIAVLQKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQ 1025
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 32.7 bits (73), Expect = 1.9
Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 185 EKLRSSWDDYKQQLKHKHKQMSLNDL----IRHIIIEDTSRKECGAARAKALESRANLIQ 240
EK + Y + + K++++ L+D+ ++ I + S+ + + N +
Sbjct: 151 EKAKLYLMQYVEASEKKNEKLKLSDVHDEWMKFIQMHQQSKIVSVKPSKSSQQVDVNKVD 210
Query: 241 NNARKQQRYENKSDHALKVTNPNFKANLGECYVCGKKGHKAYHCRYRKVNGQPPKPKANL 300
N K+++ + K + C+ C KKGH A +CR G K
Sbjct: 211 TNRSKKKKKPIPRKPEKSSQDSKKKGEIPTCFYCNKKGHYATNCRSNPKTGNQGGNKGKS 270
Query: 301 TQGDDKKYDDDDV 313
D D DV
Sbjct: 271 KGCDSVHVDGLDV 283
>SMC4_YEAST (Q12267) Structural maintenance of chromosome 4
Length = 1418
Score = 32.7 bits (73), Expect = 1.9
Identities = 23/64 (35%), Positives = 34/64 (52%), Gaps = 2/64 (3%)
Query: 151 KEIKVQINEYHQLIEELKAENIILP-DVFVAAALVEKLRSSWDDYKQQLKHKHKQMSLND 209
K K I+E ++EEL+ + ++ L+EK RS DD K LK K K +S +
Sbjct: 492 KSTKHSISEAENMLEELRGQQTEHETEIKDLTQLLEKERSILDDIKLSLKDKTKNISA-E 550
Query: 210 LIRH 213
+IRH
Sbjct: 551 IIRH 554
>GAG_MPMV (P07567) Gag polyprotein [Contains: Core protein p10; Core
phosphoprotein pp24; Core protein p12; Core protein p27;
Core protein p14; Core protein p4]
Length = 657
Score = 32.0 bits (71), Expect = 3.3
Identities = 15/35 (42%), Positives = 17/35 (47%)
Query: 261 NPNFKANLGECYVCGKKGHKAYHCRYRKVNGQPPK 295
N K G C+ CGKKGH A +C N PK
Sbjct: 539 NNKNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPK 573
>YMJ3_YEAST (Q04500) Hypothetical 103.0 kDa protein in RAD10-PRS4
intergenic region
Length = 899
Score = 31.6 bits (70), Expect = 4.3
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 195 KQQLKHKHKQMSLNDLIRHIIIEDT-SRKECGAARAKALESRANLIQNNA------RKQQ 247
+ LKHK D+I+H + D +R+E + +A ++ N+ R Q
Sbjct: 439 RMTLKHKTNSKWAKDMIKHGMTNDAETREEMEEMLRQGERLKAKMLDRNSDDEEDGRVQT 498
Query: 248 RYENKSDHALKVTNPNFKANLGECYVCGKKGHKAYHCRYRKVNGQPPKPKANLTQGDDKK 307
+ +++ + + K+ LG+ V K R R+ N + + + GDD K
Sbjct: 499 LSDVENEEKENIDSEALKSKLGKTGVMNMAFMKNGEAREREANKETLRQLRAVENGDDIK 558
Query: 308 YDDDD 312
+ D
Sbjct: 559 LFESD 563
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein
p17; Capsid protein p26; Nucleocapsid protein p14]
Length = 476
Score = 31.6 bits (70), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 270 ECYVCGKKGHKAYHCRYRKVN------GQPPKPKANLTQGD 304
+CY CGK GH+A +CR + GQ +P+ N Q +
Sbjct: 422 KCYHCGKPGHQARNCRSKNGKCSSAPYGQRSQPQNNFHQSN 462
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein
p17; Capsid protein p26; Nucleocapsid protein p14]
Length = 476
Score = 31.6 bits (70), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 270 ECYVCGKKGHKAYHCRYRKVN------GQPPKPKANLTQGD 304
+CY CGK GH+A +CR + GQ +P+ N Q +
Sbjct: 422 KCYHCGKPGHQARNCRSKNGKCSSAPYGQRSQPQNNFHQSN 462
>CUP_DROME (Q9VMA3) Cup protein (Oskar ribonucleoprotein complex 147
kDa subunit)
Length = 1132
Score = 31.6 bits (70), Expect = 4.3
Identities = 33/123 (26%), Positives = 52/123 (41%), Gaps = 19/123 (15%)
Query: 195 KQQLKHKHK-----QMSLNDLIRH--IIIEDTSRKECGAARAKALESRANLIQNNARKQ- 246
+QQ +H + Q+S DL H +I+ + K K E + LI A+ Q
Sbjct: 951 RQQPQHNPQTQAPHQLSQEDLQAHANVIMRNAVMKR------KIEEQTSKLINGGAKHQA 1004
Query: 247 -QRYENKSDHALKVTNPNFKANLGECYVCGKKGHKAYHCRYRKVNGQPPKPKANLTQGDD 305
Q+Y N+ + N A L G H + + +NGQP K +NL GD+
Sbjct: 1005 QQQYLNRGQQRQARPDANSNALLHALISGGGNNHASGY----PMNGQPQKHHSNLRFGDN 1060
Query: 306 KKY 308
+ +
Sbjct: 1061 QNF 1063
>VP2_BTV1S (P32508) Outer capsid protein VP2
Length = 961
Score = 31.2 bits (69), Expect = 5.6
Identities = 56/261 (21%), Positives = 103/261 (39%), Gaps = 46/261 (17%)
Query: 9 DKNKNVTDSTF--SVATNPPAVVTYAKQFPDVSRIEVFKGQNFRRWNERVFTLLDVHGVA 66
D+ + V +ST S TN V K D ++V G + + WN H +
Sbjct: 84 DERRAVVESTRHKSFHTNDQWVQWMMKDSMDAQPLKV--GLDTQVWNV-------AHSLH 134
Query: 67 SVLTDVKPDEAKSDAKQIEKWNNANKVCRHT--------ILSTISDALFDVYCSYKVAKD 118
+ + ++ +A + A +E +A+K C HT + A +V+ +K D
Sbjct: 135 NSVVEIDSKKADTMAYHVEPIEDASKGCLHTRTMMWNHLVRIETFHAAQEVHILFKPTYD 194
Query: 119 IWDNMNVKYTAEEATKQKFVVGNYL*WQMKEDKEIKVQINEYHQLIEEL-------KAEN 171
I V + Q F G+ +++ + N Y +++E L K
Sbjct: 195 I-----VVHAERRDRSQPFRPGDQTLINFGRGQKVAMNHNSYDKMVEGLTHLVIRGKTPE 249
Query: 172 IILPDVFVAAALVEKLRSSWDDYKQQLKHKHKQMSLNDLIRHIIIEDTSRKECGAARAKA 231
+I D+ A ++++ + W Q +H ++ +L ++ + RK R K
Sbjct: 250 VIRDDI----ASLDEICNRW----IQSRHDPGEIKAYELCKY--LSTIGRKSLD--REKE 297
Query: 232 LESRANLIQNNARKQQRYENK 252
E ANL + R Q+ +NK
Sbjct: 298 PEDEANL---SIRFQEAIDNK 315
>POT1_SCHPO (O13988) Protection of telomeres protein 1
Length = 555
Score = 31.2 bits (69), Expect = 5.6
Identities = 15/41 (36%), Positives = 23/41 (55%)
Query: 182 ALVEKLRSSWDDYKQQLKHKHKQMSLNDLIRHIIIEDTSRK 222
A++EKL S + H+ KQ S+N++ H+I E S K
Sbjct: 346 AVIEKLSQSQQSENPFIAHELKQTSVNEITAHVINEPASLK 386
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 446
Score = 31.2 bits (69), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 256 ALKVTNPNFKANLGECYVCGKKGHKAYHCR 285
AL+ K + +CY CGK GH A CR
Sbjct: 371 ALRPPRKEGKQGVQKCYYCGKPGHLARQCR 400
Score = 30.8 bits (68), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 271 CYVCGKKGHKAYHCRYRKVNGQPPKPKANLTQG 303
C+ CGK+GH CR +K G P + N +G
Sbjct: 405 CHHCGKRGHMQKDCRQKK--GNPTSQQGNSRRG 435
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,215,683
Number of Sequences: 164201
Number of extensions: 2123801
Number of successful extensions: 6100
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6070
Number of HSP's gapped (non-prelim): 45
length of query: 443
length of database: 59,974,054
effective HSP length: 113
effective length of query: 330
effective length of database: 41,419,341
effective search space: 13668382530
effective search space used: 13668382530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC139343.2