Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138580.8 - phase: 0 
         (268 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CND8_HUMAN (Q9H867) Protein C14orf138                                  67  5e-11
YNC4_YEAST (P53970) Hypothetical 27.7 kDa protein in UME3-HDA1 i...    61  2e-09
RRG1_SCHPO (P40389) Rapid response to glucose protein 1                52  2e-06
YJ99_YEAST (P47163) Hypothetical 39.0 kDa protein in ZMS1-MNS1 i...    51  3e-06
CND8_MOUSE (Q8C436) Protein C14orf138 homolog                          46  8e-05
YB9P_YEAST (P38347) Hypothetical 48.0 kDa protein in MRPL37-RIF1...    42  0.002
PRMA_PHOLL (P60092) Ribosomal protein L11 methyltransferase (EC ...    37  0.066
PRMA_DEIRA (Q9RU72) Ribosomal protein L11 methyltransferase (EC ...    36  0.086
PRMA_STRR6 (Q8DNP4) Ribosomal protein L11 methyltransferase (EC ...    34  0.33
PRMA_STRMU (Q8DS02) Ribosomal protein L11 methyltransferase (EC ...    34  0.33
PRMA_STRPN (Q97P62) Ribosomal protein L11 methyltransferase (EC ...    34  0.43
PRMA_STRP8 (Q8NZ98) Ribosomal protein L11 methyltransferase (EC ...    34  0.43
PRMA_STRP3 (Q8K5Q9) Ribosomal protein L11 methyltransferase (EC ...    34  0.43
RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...    33  0.56
PRMA_STRPY (Q99XW8) Ribosomal protein L11 methyltransferase (EC ...    33  0.73
PRMA_STRA5 (Q8DX85) Ribosomal protein L11 methyltransferase (EC ...    33  0.95
PRMA_STRA3 (Q8E307) Ribosomal protein L11 methyltransferase (EC ...    33  0.95
GIDB_CLOAB (Q97CW4) Methyltransferase gidB (EC 2.1.-.-) (Glucose...    33  0.95
PREB_MOUSE (Q9WUQ2) Prolactin regulatory element-binding protein...    32  1.6
ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor) (20-...    32  2.1

>CND8_HUMAN (Q9H867) Protein C14orf138
          Length = 144

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 4/88 (4%)

Query: 83  GVTGSVMWDSGIVLGKFLEHSVDSG--MLVLQGKKIVELGSGCGLVGCIAALLGGEVILT 140
           G  G V+WD+ IVL K+LE    SG     L  + ++ELGSG G VG +AA LG +V++T
Sbjct: 36  GGVGCVVWDAAIVLSKYLETPEFSGDGAHALSRRSVLELGSGTGAVGLMAATLGADVVVT 95

Query: 141 DLPDRMRLLRKNIETNMKHISLRGSITA 168
           DL +   LL+ NI  N KH+ + GS+ A
Sbjct: 96  DLEELQDLLKMNINMN-KHL-VTGSVQA 121


>YNC4_YEAST (P53970) Hypothetical 27.7 kDa protein in UME3-HDA1
           intergenic region
          Length = 246

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 30/249 (12%)

Query: 41  GIQQPTLSKPNAFVAQSSLQLRLDSCGHSLSILQSPSSLGKPGVTGSVMWDSGIVLGKF- 99
           G     + +P   + Q+ L       G  L  L+     G+ G  G V W +G +L ++ 
Sbjct: 7   GFGDLVVPRPKEHLGQTDLSFG----GKLLPALKICEDGGESGCGGKV-WIAGELLCEYI 61

Query: 100 LEHSVDSGML-----VLQGKKIVELGSGCGLVGCIAALL-------GGEVILTDLPDRMR 147
           LE SVD  +        Q KK++ELGSG GLVG    LL       G +V +TD+   + 
Sbjct: 62  LEKSVDHLLSKTVNGTKQFKKVLELGSGTGLVGLCVGLLEKNTFHDGTKVYVTDIDKLIP 121

Query: 148 LLRKNIETNMKHISLRGSITATELTWGD------DPDQELIDP-TPDYILGSDVVYSEGA 200
           LL++NIE +     ++  + A EL WG+       P +  +     D +L +D VY E A
Sbjct: 122 LLKRNIELD----EVQYEVLARELWWGEPLSADFSPQEGAMQANNVDLVLAADCVYLEEA 177

Query: 201 VVDLLETLGQLSG-PNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVDQTLWHPDYHSNR 259
              L +TL  L+   N  + L    +     ++F      +F +  +        Y   R
Sbjct: 178 FPLLEKTLLDLTHCINPPVILMAYKKRRKADKHFFNKIKRNFDVLEITDFSKFEHYLKER 237

Query: 260 VVLYVLVKK 268
             L+ L++K
Sbjct: 238 THLFQLIRK 246


>RRG1_SCHPO (P40389) Rapid response to glucose protein 1
          Length = 303

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 8/87 (9%)

Query: 117 VELGSGCGLVGCIAAL-LGGEVILTDLPDRMRLLRKNIETNMKHI-SLRGSITATELTWG 174
           +ELG+G GLVG  AA+ LG +V+ TDLPD +  ++ N++ N + I    GS++   L W 
Sbjct: 140 LELGAGTGLVGISAAIQLGWQVVCTDLPDIVENMQYNVDYNSELIQQYAGSVSCHVLDWM 199

Query: 175 DDPDQE-----LIDPTPDYILGSDVVY 196
           + PD +     LI P    I+ SD +Y
Sbjct: 200 NPPDDDNRPSWLIKPF-QRIIASDCIY 225


>YJ99_YEAST (P47163) Hypothetical 39.0 kDa protein in ZMS1-MNS1
           intergenic region
          Length = 339

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 19/179 (10%)

Query: 70  LSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQGK-------KIVELGSG 122
           ++I ++P+ +     TG   W++ + +G FL H     +  +QG+        ++E+G+G
Sbjct: 117 ITIEETPNLISAASTTGFRTWEAALYMGDFLIHKPLQELAPVQGQDDGKKKLNVLEVGAG 176

Query: 123 CGLVGCIAALLGGEVI----LTDLPDRM--RLLRKNIETNMKHISLRGSITATELTWGDD 176
            G+V  +      E +    +TD    +    L++N E N +       I    L WG D
Sbjct: 177 TGIVSLVILQKYHEFVNKMYVTDGDSNLVETQLKRNFELNNEVRENEPDIKLQRLWWGSD 236

Query: 177 PDQELIDPTPDYILGSDVVYSEGAVVDLLETLGQLSGPN--TTIFLAGELRNDAILEYF 233
              E I    D ++G+DV Y    + DL E L +    +      L+  +R+++ ++ F
Sbjct: 237 RVPEDI----DLVVGADVTYDPTILPDLCECLAECLALDRCKLCLLSATIRSESTVQLF 291


>CND8_MOUSE (Q8C436) Protein C14orf138 homolog
          Length = 89

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 26/54 (48%), Positives = 33/54 (60%), Gaps = 2/54 (3%)

Query: 83  GVTGSVMWDSGIVLGKFLEHSVDSG--MLVLQGKKIVELGSGCGLVGCIAALLG 134
           G  G V+WD+ IVL K+LE    SG     L  + ++ELGSG G VG +AA LG
Sbjct: 36  GGVGCVVWDAAIVLSKYLETPGFSGDGAHALSRRSVLELGSGTGAVGLMAATLG 89


>YB9P_YEAST (P38347) Hypothetical 48.0 kDa protein in MRPL37-RIF1
           intergenic region
          Length = 419

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 46/151 (30%), Positives = 71/151 (46%), Gaps = 32/151 (21%)

Query: 73  LQSPSSLGKPGVT----GSVMWDSGIVLGKFLE------HSVDSGMLV---LQGKKIVEL 119
           L +   L +P +T    G   W S ++L + +       H+ +  ML    ++  K++EL
Sbjct: 201 LSTSIPLHEPSLTADNLGWKTWGSSLILSQLVVDHLDYLHTTNVNMLANSDIKQIKVLEL 260

Query: 120 GSGCGLVGCIAAL----LGG----EVILTDLPDRMRLLRKNIETNMKHISLRGSITATEL 171
           G+G GLVG   AL    L G    E+ +TDLP+ +  L+KN+  N    +L   + A  L
Sbjct: 261 GAGTGLVGLSWALKWKELYGTENIEIFVTDLPEIVTNLKKNVSLN----NLGDFVQAEIL 316

Query: 172 TWGDDPDQELIDPTP-----DYILGSDVVYS 197
            W +  D   ID        D IL +D +YS
Sbjct: 317 DWTNPHD--FIDKFGHENEFDVILIADPIYS 345


>PRMA_PHOLL (P60092) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 296

 Score = 36.6 bits (83), Expect = 0.066
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 32/172 (18%)

Query: 87  SVMWDSGIVLGKFLEHSVDSGM-----LVLQGKKIVELGSGCGLVGCIAALLGG-EVILT 140
           +VM D G+  G     +    +     L L+GK +++ G G G++   A  LG    I  
Sbjct: 128 NVMLDPGLAFGTGTHPTTSLCLQWLDSLNLEGKTVIDFGCGSGILAIAALKLGATHAIGI 187

Query: 141 DL-PDRMRLLRKNIETN--MKHISLRGSITATELTWGDDPDQELIDPTPDYILGSDVVYS 197
           D+ P  ++  R N E N  ++H++L                  L   TP   L SDVV +
Sbjct: 188 DIDPQAIQASRDNAERNGVLEHLTL-----------------YLAKNTPT-DLESDVVIA 229

Query: 198 E---GAVVDLLETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRV 246
               G + +L   +G L  P   + L+G L N A  E  ++A  + F I  V
Sbjct: 230 NILAGPLRELAPVIGALPKPGGLLGLSGILTNQA--ESVIQAYTDKFVIDPV 279


>PRMA_DEIRA (Q9RU72) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 273

 Score = 36.2 bits (82), Expect = 0.086
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 107 GMLVLQGKKIVELGSGCGLVGCIAALLG-GEVILTDL-PDRMRLLRKNIETNMKHISLRG 164
           G L L GK+++++G+G G++   AA LG  + +  D+ P  + + R N   N     L  
Sbjct: 120 GELDLSGKRVLDVGTGSGVLAMAAAKLGAAQTLGVDIDPITIPIARDNARDN----GLTS 175

Query: 165 SITATELTWGDDPDQELIDPTPDYILGSDVVYSEGAVVDLL--ETLGQLSGPNTTIFLAG 222
            I   E T G D D E+     D ++ +  +Y+E  + DLL  E   QL  P   + L G
Sbjct: 176 GIRFEEGTLGLDEDAEMFGEPYDVLVAN--LYAE--LHDLLAGEYAAQLR-PGAPLILTG 230

Query: 223 EL 224
            L
Sbjct: 231 IL 232


>PRMA_STRR6 (Q8DNP4) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 316

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 121 HDLTIVPSWTDYEATAGEKIIKLDPGMAFGTGTHPTTKMSLFALEQVLRGGETVLDVGTG 180

Query: 123 CGLVGCIAALLGG-EVILTDLPD-RMRLLRKNIETN 156
            G++   ++LLG  E+   DL D  +R+ ++NIE N
Sbjct: 181 SGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELN 216


>PRMA_STRMU (Q8DS02) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 317

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 27/114 (23%), Positives = 56/114 (48%), Gaps = 9/114 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 122 HDLTIVPSWTDYEVQAGEKIIKLDPGMAFGTGTHPTTKMSLFALEQVLRGGETVIDVGTG 181

Query: 123 CGLVGCIAALLGG-EVILTDLPD-RMRLLRKNIETNMKHISLRGSITATELTWG 174
            G++   ++LLG  E+   DL D  +R+ ++NI+ N+   ++   +TA +L  G
Sbjct: 182 SGVLSVASSLLGAKEIFAYDLDDVAVRVAQENIDLNVGTENIH--VTAGDLLKG 233


>PRMA_STRPN (Q97P62) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 316

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 121 HDLTIVPSWTDYEATAGEMIIKLDPGMAFGTGTHPTTKMSLFALEQVLRGGETVLDVGTG 180

Query: 123 CGLVGCIAALLGG-EVILTDLPD-RMRLLRKNIETN 156
            G++   ++LLG  E+   DL D  +R+ ++NIE N
Sbjct: 181 SGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELN 216


>PRMA_STRP8 (Q8NZ98) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 317

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 122 HDLTIVPSWTDYDASAGEKVIKLDPGMAFGTGTHPTTKMSLFALEQILRGGETVIDVGTG 181

Query: 123 CGLVGCIAALLGGEVILT-DLPD-RMRLLRKNIETN 156
            G++   ++LLG + I   DL D  +R+ ++NI+ N
Sbjct: 182 SGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLN 217


>PRMA_STRP3 (Q8K5Q9) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 317

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 122 HDLTIVPSWTDYDASAGEKVIKLDPGMAFGTGTHPTTKMSLFALEQILRGGETVIDVGTG 181

Query: 123 CGLVGCIAALLGGEVILT-DLPD-RMRLLRKNIETN 156
            G++   ++LLG + I   DL D  +R+ ++NI+ N
Sbjct: 182 SGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLN 217


>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) (RNA polymerase II subunit 1)
          Length = 1752

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 149  LRKNIETNMKHISLRGSITATELTWGDDPDQELIDPTPDYI 189
            L KN++T ++H +L    +ATE+ +  DP   +I+   D++
Sbjct: 1133 LAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFV 1173


>PRMA_STRPY (Q99XW8) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 317

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 23/96 (23%), Positives = 46/96 (46%), Gaps = 7/96 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 122 HDLTIVPSWTDYDASAGEKVIKLDPGMAFGTGTHPTTKMSLFALEQILRGGETVIDVGTG 181

Query: 123 CGLVGCIAALLGGEVILT-DLPD-RMRLLRKNIETN 156
            G++   ++LLG + I   DL D  +R+ + NI+ N
Sbjct: 182 SGVLSIASSLLGAKTIYAYDLDDVAVRVAQDNIDLN 217


>PRMA_STRA5 (Q8DX85) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 317

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 122 HDLTIVPSWTDYEAKAGEKIIKMDPGMAFGTGTHPTTKMSLFALEQVLRGGETVIDVGTG 181

Query: 123 CGLVGCIAALLGG-EVILTDLPD-RMRLLRKNIETN 156
            G++   ++LLG  ++   DL D  +R+ ++NI+ N
Sbjct: 182 SGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMN 217


>PRMA_STRA3 (Q8E307) Ribosomal protein L11 methyltransferase (EC
           2.1.1.-) (L11 Mtase)
          Length = 317

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQ-----GKKIVELGSG 122
           H L+I+ S +          +  D G+  G     +    +  L+     G+ ++++G+G
Sbjct: 122 HDLTIVPSWTDYEAKAGEKIIKMDPGMAFGTGTHPTTKMSLFALEQVLRGGETVIDVGTG 181

Query: 123 CGLVGCIAALLGG-EVILTDLPD-RMRLLRKNIETN 156
            G++   ++LLG  ++   DL D  +R+ ++NI+ N
Sbjct: 182 SGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMN 217


>GIDB_CLOAB (Q97CW4) Methyltransferase gidB (EC 2.1.-.-) (Glucose
           inhibited division protein B)
          Length = 239

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 101 EHSVDSGML-----VLQGKKIVELGSGCGLVGCIAALLGGE---VILTDLPDRMRLLRKN 152
           +H +DS  +     +++ K+I+++G+G G  G   A++  +   V+L  L  R+  L + 
Sbjct: 54  KHFIDSIKIFECEHIVKAKRIIDVGTGAGFPGLPIAIMNDDIEVVLLDSLQKRVNFLNEV 113

Query: 153 I-ETNMKHIS 161
           I E N+K+IS
Sbjct: 114 IKELNLKNIS 123


>PREB_MOUSE (Q9WUQ2) Prolactin regulatory element-binding protein
           (Mammalian guanine nucleotide exchange factor mSec12)
          Length = 417

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 42  IQQPTLSKPNAFVAQSSLQLRLDSCGHS----LSILQSPSSLGKPGVTGSVMWDSGIVLG 97
           ++QP      A+ + + L LR  SCGH     LS+  S + LG   VTGSV       L 
Sbjct: 274 LRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTVTGSVAIYIAFSLQ 333

Query: 98  KFLEHSVDSGMLVLQGKKIVELGSGCGLVG 127
           +        G++V     + E G G  L+G
Sbjct: 334 RLYYVKEAHGIVVTDVTFLPEKGCGPKLLG 363


>ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor)
           (20-hydroxy-ecdysone receptor) (20E receptor)
          Length = 675

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 65  SCGHSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCG 124
           S   +L +  SP+SLG P      +W S        E +  +G  VL       LG GCG
Sbjct: 27  SSSAALGMTMSPNSLGSPNYDELELWSS-------YEDNAYNGHSVLSNGN-NNLG-GCG 77

Query: 125 LVGCIAALLGGEVILTDLPDRMRLLRKNIETNMKHISLRGSITATELTWGDDPDQELIDP 184
               +  L+ G V   +L   M +  + ++ N   I          L  G +P+Q LI P
Sbjct: 78  AANNL--LMNGIVGNNNLNGMMNMASQAVQANANSI----QHIVGNLINGVNPNQTLIPP 131

Query: 185 TPDYI 189
            P  I
Sbjct: 132 LPSII 136


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.316    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,681,450
Number of Sequences: 164201
Number of extensions: 1318875
Number of successful extensions: 3537
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3525
Number of HSP's gapped (non-prelim): 39
length of query: 268
length of database: 59,974,054
effective HSP length: 108
effective length of query: 160
effective length of database: 42,240,346
effective search space: 6758455360
effective search space used: 6758455360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)


Medicago: description of AC138580.8