BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138579.4 + phase: 0
(835 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CARE_MOUSE (Q99KF0) Caspase recruitment domain protein 14 (Bcl10... 34 1.8
CA1C_HUMAN (Q99715) Collagen alpha 1(XII) chain precursor 33 3.1
LYTF_BACSU (O07532) Endopeptidase lytF precursor (EC 3.4.-.-) (G... 32 5.3
KPYG_TOBAC (Q40546) Pyruvate kinase isozyme G, chloroplast precu... 32 5.3
ZN83_HUMAN (P51522) Zinc finger protein 83 (Zinc finger protein ... 32 6.9
YBM6_SCHPO (Q10336) Hypothetical protein C582.06c in chromosome II 32 9.1
PT09_YEAST (P32522) PET309 protein, mitochondrial precursor 32 9.1
>CARE_MOUSE (Q99KF0) Caspase recruitment domain protein 14
(Bcl10-interacting MAGUK protein 2) (Bimp2)
Length = 999
Score = 33.9 bits (76), Expect = 1.8
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 17/169 (10%)
Query: 23 RKKKVRCNYCGKVVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLKMKENLE--GCRSNKK 80
R+K++ C + +Y +KQ L R S V+ CE+ E LKM NLE G N+
Sbjct: 210 REKELAATRCHSLQEE-LYLVKQELQRAS-LVSSCERESRERSLKMASNLEPQGEELNRL 267
Query: 81 QKQVDAQAYMNFQSNDDEDDEEQVGCRSKGKQLMDGRNVSVNLTPLRSLGYVDPGWE--H 138
+++ + M F + + E+ + + KQ + R S+ + + WE
Sbjct: 268 KEENEKLRSMTFSLVEKDILEQSLDEARESKQELVDRIHSLRERAVAAERQQKQYWEEKE 327
Query: 139 GVAQDERKKKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSAPEEVY 187
RK +V C +K+ + + G+VA + ++ Y
Sbjct: 328 QTLLQFRKTQVDCEL-----------YKEKMTMLQGQVAELQKERDQAY 365
>CA1C_HUMAN (Q99715) Collagen alpha 1(XII) chain precursor
Length = 3063
Score = 33.1 bits (74), Expect = 3.1
Identities = 14/44 (31%), Positives = 24/44 (53%)
Query: 140 VAQDERKKKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSAP 183
+A + V CE+++SG +NRF Q L +IP + ++ P
Sbjct: 2898 IASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQP 2941
>LYTF_BACSU (O07532) Endopeptidase lytF precursor (EC 3.4.-.-)
(Gamma-D-glutamate-meso-diaminopimelate muropeptidase
lytF) (Cell wall-associated polypeptide CWBP49)
Length = 488
Score = 32.3 bits (72), Expect = 5.3
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 5/91 (5%)
Query: 499 KLIYNQIWLLNLMKSEFTHGNELLKPAGTQCASSFATLQNLLDHRVSLRRMFLSNKWMSS 558
K+ ++ LN + S+ + LK +GT +SS ++ ++ + S S+K S+
Sbjct: 110 KMTVQELKKLNGLSSDLIRAGQKLKVSGTVSSSSSSSKKSNSNKSSSS-----SSKSSSN 164
Query: 559 RFSSSSQGKEVQKIVLNVTFWKKMQSVRNSV 589
+ SSSS K+ L + WK V S+
Sbjct: 165 KSSSSSSSTGTYKVQLGDSLWKIANKVNMSI 195
>KPYG_TOBAC (Q40546) Pyruvate kinase isozyme G, chloroplast
precursor (EC 2.7.1.40)
Length = 562
Score = 32.3 bits (72), Expect = 5.3
Identities = 32/121 (26%), Positives = 50/121 (40%), Gaps = 9/121 (7%)
Query: 524 PAGTQCASSFATLQNLLDHRVSLRRMFLSNKWMSSRFSSSSQGKEVQKIVLNVTFWKKMQ 583
P G A+ A+L L + ++ +F S+ R ++S+Q VQ + + +
Sbjct: 7 PTGLHVAAKPASLDRLSSAK-NVGDLFFSDSRHRKRVNTSNQIMAVQSL-------EHIH 58
Query: 584 SVRNSVYPILQVFQKVSSGESLSMPYIYNDLYRAKLAIKSIHGDDARKYEPFWKVIDRHC 643
V N+VY F SSG SL +Y + R K I G E WK+ +
Sbjct: 59 GVNNNVYANYVNFNVPSSGYSLGQESVYLNSPR-KTKIVCTIGPSTSSREMIWKLAEAGM 117
Query: 644 N 644
N
Sbjct: 118 N 118
>ZN83_HUMAN (P51522) Zinc finger protein 83 (Zinc finger protein
HPF1)
Length = 428
Score = 32.0 bits (71), Expect = 6.9
Identities = 19/41 (46%), Positives = 23/41 (55%), Gaps = 5/41 (12%)
Query: 24 KKKVRCNYCGKVVSGGIYRLKQHLARVSGEVTY----CEKA 60
+K +CN CGKV S Y L QHL +GE Y C+KA
Sbjct: 254 EKPYKCNECGKVFSRNSY-LAQHLIIHAGEKPYKCDECDKA 293
>YBM6_SCHPO (Q10336) Hypothetical protein C582.06c in chromosome II
Length = 327
Score = 31.6 bits (70), Expect = 9.1
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 189 KIKENMKWHRTGKRHRQPEAKDLMPFYPKSDNEDDEYEQQEDTLHHMNKEALIDI 243
K+K++M+ T KR + E K++ PK+D+E D +++ +L + L+D+
Sbjct: 165 KLKDSME---TMKRRMETETKEMNKIKPKNDSESDRFKRNSQSL--SQQSPLLDV 214
>PT09_YEAST (P32522) PET309 protein, mitochondrial precursor
Length = 965
Score = 31.6 bits (70), Expect = 9.1
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 443 ITENTPNYKAAGKMLEERRRNLFWTPCAIYCINQVLEDFLKIRCVEECMEKGQKIT--KL 500
I N P A + E+ +NL W I N+ ++ ++ +R +C E KIT KL
Sbjct: 499 IESNRPTEAIA--LFEKHSKNLSWRDGLISVYNKAIKAYIGLRNANKCEELFDKITTSKL 556
Query: 501 IYNQIWLLNLMKSEFTHGNELLKPAGTQCASSFATLQNLLDHRV 544
N + ++K L C ++ + + L+ H V
Sbjct: 557 AVNSEFYKMMIK--------FLVTLNEDCETALSIIDQLIKHSV 592
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,124,189
Number of Sequences: 164201
Number of extensions: 4199210
Number of successful extensions: 12046
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12032
Number of HSP's gapped (non-prelim): 19
length of query: 835
length of database: 59,974,054
effective HSP length: 119
effective length of query: 716
effective length of database: 40,434,135
effective search space: 28950840660
effective search space used: 28950840660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC138579.4