BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138465.9 - phase: 0 
         (521 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MREC_BACSU (Q01466) Rod shape-determining protein mreC                 34  0.81
ALG2_HUMAN (Q9H553) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1...    33  2.3
TYPH_MYCGE (P47297) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)     32  5.2
OCH1_YEAST (P31755) Alpha-1,6-mannosyltransferase (EC 2.4.1.-)         31  6.8
MFD_BORBU (O51568) Transcription-repair coupling factor (TRCF)         31  6.8
RA50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase        31  8.9
NAC2_ARATH (Q39013) NAC-domain containing protein 2 (ANAC002)          31  8.9

>MREC_BACSU (Q01466) Rod shape-determining protein mreC
          Length = 290

 Score = 34.3 bits (77), Expect = 0.81
 Identities = 20/97 (20%), Positives = 43/97 (43%), Gaps = 9/97 (9%)

Query: 356 DVMHIEKNFFDNIFNTVMNVKGKTKDNEKARKDIELYCRRKDLLLVEKSSGKFLKPCANY 415
           ++ H    FF  IF  + ++K   K+NE+ R+ ++   + +  L   +   K L+    +
Sbjct: 46  NIFHTPAEFFAGIFENINDLKNTYKENERLREKLDGQTQYEAKLQELEEENKSLRDELGH 105

Query: 416 TLPIEETKDVY---------RWVKELKMSDGYSSNLA 443
              I++ K +           W K++ ++ G   N+A
Sbjct: 106 VKSIKDYKPILATVIARSPDNWAKQVTINKGTQQNVA 142


>ALG2_HUMAN (Q9H553) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)
           (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol
           mannosyltransferase)
          Length = 416

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 384 KARKDIELYCRRKDLLLVEKSSGKFLKPCANYTLPIEETKDVYRWVKELK--MSDGYSSN 441
           + RK I  YC   DLLL ++ S  FLK    Y  PI+       W++E    M+D    N
Sbjct: 128 RRRKKILFYCHFPDLLLTKRDS--FLKRL--YRAPID-------WIEEYTTGMADCILVN 176

Query: 442 LARCADVENGRMHGMKSHDTHIFMECLISTTFSALEPHVLNPLIEMSQYF 491
               A V       +   D  +    L  T+F ++ P  L+ L+   + F
Sbjct: 177 SQFTAAVFKETFKSLSHIDPDVLYPSLNVTSFDSVVPEKLDDLVPKGKKF 226


>TYPH_MYCGE (P47297) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)
          Length = 421

 Score = 31.6 bits (70), Expect = 5.2
 Identities = 20/61 (32%), Positives = 36/61 (58%), Gaps = 5/61 (8%)

Query: 349 NLLRHNLDVMHIEKNFFDNIFNTVMNVKGKTKDNEKARKDIELYCRRKDLLLVEKSSGKF 408
           N L+ +LD   + ++F D +   V+N+  +TK  +  +K IELY   +D+L  +K+  +F
Sbjct: 257 NFLKQDLD--QVGQDFIDLMQTIVINILLETKQAKTKQKAIELY---QDVLTSKKAWNRF 311

Query: 409 L 409
           L
Sbjct: 312 L 312


>OCH1_YEAST (P31755) Alpha-1,6-mannosyltransferase (EC 2.4.1.-)
          Length = 480

 Score = 31.2 bits (69), Expect = 6.8
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 333 NWTKRSIFWDLLY-WKDNLLRHNLDVMHIEKNFFDN 367
           NWT   IF D+++ + +N+LR+N D++ I  N   N
Sbjct: 341 NWTGPGIFSDIIFEYMNNVLRYNSDILLINPNLNKN 376


>MFD_BORBU (O51568) Transcription-repair coupling factor (TRCF)
          Length = 1125

 Score = 31.2 bits (69), Expect = 6.8
 Identities = 29/119 (24%), Positives = 48/119 (39%), Gaps = 10/119 (8%)

Query: 378 KTKDNEKARKDIELYCRRKDLLLVEKSSGKFLKPCANYTLPIEETKDVYRWVKELK--MS 435
           K +  E A K IELY +R+ +  ++      L+       P +ET D  R +KE+K  M 
Sbjct: 540 KKRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETPDQIRAIKEIKEDMM 599

Query: 436 DGYSSNLARCADVENGRMHGMKSHDTHIFMECLISTTFSALEPHVLNPLIEMSQYFKNS 494
                +   C DV  G+        T + M           +  VL+P   +++   N+
Sbjct: 600 SFKVMDRLLCGDVGFGK--------TEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNT 650


>RA50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase
          Length = 864

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 20/85 (23%), Positives = 46/85 (53%), Gaps = 9/85 (10%)

Query: 351 LRHNLDVMHIEKNFFDNIFNTV--MNVKGKTKDNEKARKDIELYCRRKDLLLVEKSSGKF 408
           LR  ++++  ++N ++ +  ++   N+  K K+N K+R + EL    KD   +E+ S + 
Sbjct: 623 LREEVNIIQFDENRYNELKTSLDAYNLSLKEKENRKSRIEGELESLEKD---IEEISNRI 679

Query: 409 LKPCANYTLPIEETKDVYRWVKELK 433
               ANY L +++ + +   + +L+
Sbjct: 680 ----ANYELQLKDREKIINAINKLE 700


>NAC2_ARATH (Q39013) NAC-domain containing protein 2 (ANAC002)
          Length = 289

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 22/69 (31%), Positives = 30/69 (42%), Gaps = 16/69 (23%)

Query: 260 GGKTTWFGCTRRWLPDDHPFRRNKNAFM------------KGETENRGPPPNLT-SEQVW 306
           G KT W     R    D   R+ KN+              KG TE RGPPP +   +++ 
Sbjct: 119 GEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEI- 177

Query: 307 NKVKNKPKV 315
             ++ KPKV
Sbjct: 178 --MEEKPKV 184


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,259,554
Number of Sequences: 164201
Number of extensions: 3288390
Number of successful extensions: 6286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6286
Number of HSP's gapped (non-prelim): 7
length of query: 521
length of database: 59,974,054
effective HSP length: 115
effective length of query: 406
effective length of database: 41,090,939
effective search space: 16682921234
effective search space used: 16682921234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)