BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138464.6 + phase: 0
(250 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CSN3_ARATH (Q8W575) COP9 signalosome complex subunit 3 (Signalos... 292 5e-79
CSN3_BRARE (Q6P2U9) COP9 signalosome complex subunit 3 (Signalos... 193 3e-49
CSN3_XENLA (Q7ZTN8) COP9 signalosome complex subunit 3 (Signalos... 189 4e-48
CSN3_HUMAN (Q9UNS2) COP9 signalosome complex subunit 3 (Signalos... 187 3e-47
CSN3_MOUSE (O88543) COP9 signalosome complex subunit 3 (Signalos... 185 1e-46
CSN3_DROME (Q8SYG2) COP9 signalosome complex subunit 3 (Signalos... 165 8e-41
CSN3_BRAOL (P68358) COP9 signalosome complex subunit 3 (Signalos... 73 6e-13
CSN3_CAEEL (Q9N425) COP9 signalosome complex subunit 3 (Signalos... 59 8e-09
PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit... 59 1e-08
PSD3_MOUSE (P14685) 26S proteasome non-ATPase regulatory subunit... 57 4e-08
PSD3_CAEEL (Q04908) 26S proteasome non-ATPase regulatory subunit... 52 1e-06
PSD3_DROME (P25161) Probable 26S proteasome non-ATPase regulator... 49 9e-06
PSD3_ANOST (Q9U5Z8) Probable 26S proteasome non-ATPase regulator... 49 1e-05
PSD3_ANOGA (O61470) Probable 26S proteasome non-ATPase regulator... 48 2e-05
PD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulator... 47 6e-05
RPN3_YEAST (P40016) 26S proteasome regulatory subunit RPN3 45 2e-04
PD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulator... 43 8e-04
PSDB_MOUSE (Q8BG32) 26S proteasome non-ATPase regulatory subunit... 42 0.001
PSD3_DAUCA (Q06364) Probable 26S proteasome non-ATPase regulator... 41 0.002
RPN3_SCHPO (O42897) Probable 26S proteasome regulatory subunit rpn3 41 0.003
>CSN3_ARATH (Q8W575) COP9 signalosome complex subunit 3 (Signalosome
subunit 3) (FUSCA protein 11) (FUSCA11)
Length = 429
Score = 292 bits (748), Expect = 5e-79
Identities = 156/230 (67%), Positives = 178/230 (76%), Gaps = 3/230 (1%)
Query: 1 MICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPKYASPL 60
MICIG KRFQKAL+LL+NVVTAPM +NAI +EAYKKYILVSLI +GQF+ +LPK AS
Sbjct: 189 MICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKCASTA 248
Query: 61 AQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNI 120
AQR+ K + P IEL YN+GK+ E+EA V A FE D NLGL KQ VSS+YKRNI
Sbjct: 249 AQRSFKNYT-GPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYKRNI 307
Query: 121 QRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQY 180
RLTQ YLTLSL+DIAN V L +AKEAEMHVLQMIQDG+I+A INQKDGMVRFLEDPEQY
Sbjct: 308 LRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMIQDGQIHALINQKDGMVRFLEDPEQY 367
Query: 181 KTCEMIEHIDSSIQRIMALSKKLTATDEQISCDQLYLSKV--SVQSFSFG 228
K+ EMIE +DS IQR + LSK L A DE +SCD LYL KV Q + FG
Sbjct: 368 KSSEMIEIMDSVIQRTIGLSKNLLAMDESLSCDPLYLGKVGRERQRYDFG 417
>CSN3_BRARE (Q6P2U9) COP9 signalosome complex subunit 3 (Signalosome
subunit 3)
Length = 423
Score = 193 bits (491), Expect = 3e-49
Identities = 104/219 (47%), Positives = 145/219 (65%), Gaps = 2/219 (0%)
Query: 1 MICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPKYASPL 60
MI G K F++AL +T P ++ I++EAYKKYILVSLI HG+ LPKY S +
Sbjct: 190 MIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQ-QLPKYTSQI 248
Query: 61 AQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNI 120
R +K N ELAQ Y AE+ A VN ++ F DNN GL KQ +SS+YK+NI
Sbjct: 249 VGRFIKPL-SNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLVKQCLSSLYKKNI 307
Query: 121 QRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQY 180
QRLT+T+LTLSL+D+A+ V L+ +EAE +VL MI+DGEIYA+INQKDGMV F ++PE+Y
Sbjct: 308 QRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIYASINQKDGMVCFHDNPEKY 367
Query: 181 KTCEMIEHIDSSIQRIMALSKKLTATDEQISCDQLYLSK 219
M+ ID + + + L +KL + D++I+ + ++ K
Sbjct: 368 NNPAMLHKIDQEMLKCIELDEKLKSMDQEITVNPQFVQK 406
>CSN3_XENLA (Q7ZTN8) COP9 signalosome complex subunit 3 (Signalosome
subunit 3)
Length = 423
Score = 189 bits (481), Expect = 4e-48
Identities = 102/219 (46%), Positives = 145/219 (65%), Gaps = 2/219 (0%)
Query: 1 MICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPKYASPL 60
MI G K F++A+ +T P ++ I++EAYKKYILVSLI HG+ LPKY S +
Sbjct: 190 MIYTGLKNFERAMYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQ-QLPKYTSQV 248
Query: 61 AQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNI 120
R +K N ELAQ Y+ AE+ V+ + F DNN+GL KQ +SS+YK+NI
Sbjct: 249 VGRFIKPL-SNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVKQCLSSLYKKNI 307
Query: 121 QRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQY 180
QRLT+T+LTLSL+D+A+ V L+ A+EAE +VL MI+DGEI+A+INQKDGMV F + PE+Y
Sbjct: 308 QRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCFHDSPEKY 367
Query: 181 KTCEMIEHIDSSIQRIMALSKKLTATDEQISCDQLYLSK 219
M+ +ID + R + L +L A D++I+ + ++ K
Sbjct: 368 NNPAMLHNIDQEMLRCIDLDDRLKAMDQEITVNPQFVQK 406
>CSN3_HUMAN (Q9UNS2) COP9 signalosome complex subunit 3 (Signalosome
subunit 3) (SGN3) (JAB1-containing signalosome subunit
3)
Length = 423
Score = 187 bits (474), Expect = 3e-47
Identities = 99/219 (45%), Positives = 146/219 (66%), Gaps = 2/219 (0%)
Query: 1 MICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPKYASPL 60
MI G K F++AL +T P ++ I++E+YKKYILVSLI G+ LPKY S +
Sbjct: 190 MIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQ-QLPKYTSQI 248
Query: 61 AQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNI 120
R +K N ELAQ Y+ +E+ VN ++ F DNN+GL KQ +SS+YK+NI
Sbjct: 249 VGRFIKPL-SNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNI 307
Query: 121 QRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQY 180
QRLT+T+LTLSL+D+A+ V L+ +EAE +VL MI+DGEI+A+INQKDGMV F ++PE+Y
Sbjct: 308 QRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY 367
Query: 181 KTCEMIEHIDSSIQRIMALSKKLTATDEQISCDQLYLSK 219
M+ +ID + + + L ++L A D++I+ + ++ K
Sbjct: 368 NNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQK 406
>CSN3_MOUSE (O88543) COP9 signalosome complex subunit 3 (Signalosome
subunit 3) (SGN3) (JAB1-containing signalosome subunit
3)
Length = 423
Score = 185 bits (469), Expect = 1e-46
Identities = 98/219 (44%), Positives = 146/219 (65%), Gaps = 2/219 (0%)
Query: 1 MICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPKYASPL 60
MI G K F++AL +T P ++ I++E+YKKYILVSLI G+ LPKY S +
Sbjct: 190 MIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQ-QLPKYTSQI 248
Query: 61 AQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNI 120
R +K N ELAQ Y+ +E+ V+ ++ F DNN+GL KQ +SS+YK+NI
Sbjct: 249 VGRFIKPL-SNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLSSLYKKNI 307
Query: 121 QRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQY 180
QRLT+T+LTLSL+D+A+ V L+ +EAE +VL MI+DGEI+A+INQKDGMV F ++PE+Y
Sbjct: 308 QRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY 367
Query: 181 KTCEMIEHIDSSIQRIMALSKKLTATDEQISCDQLYLSK 219
M+ +ID + + + L ++L A D++I+ + ++ K
Sbjct: 368 NNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQK 406
>CSN3_DROME (Q8SYG2) COP9 signalosome complex subunit 3 (Signalosome
subunit 3) (Dch3)
Length = 445
Score = 165 bits (418), Expect = 8e-41
Identities = 91/219 (41%), Positives = 138/219 (62%), Gaps = 3/219 (1%)
Query: 1 MICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPKYASPL 60
MI K +++AL +T P M+ I++EAYKK+++VSLI G+ + +PK +
Sbjct: 207 MIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYKKFLMVSLIVEGKIAY-IPKNTQVI 265
Query: 61 AQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNI 120
R +K N +L Y N E+ + + F DNN+GLAKQV +S+YKRNI
Sbjct: 266 G-RFMKPMA-NHYHDLVNVYANSSSEELRIIILKYSEAFTRDNNMGLAKQVATSLYKRNI 323
Query: 121 QRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQY 180
QRLT+T+LTLSL D+A+ V L SA EAE ++L MI+ GEIYA+INQKDGMV F +DPE+Y
Sbjct: 324 QRLTKTFLTLSLSDVASRVQLASAVEAERYILNMIKSGEIYASINQKDGMVLFKDDPEKY 383
Query: 181 KTCEMIEHIDSSIQRIMALSKKLTATDEQISCDQLYLSK 219
+ EM ++ ++I ++ +++ +E+I + +Y+ K
Sbjct: 384 NSPEMFLNVQNNITHVLDQVRQINKMEEEIILNPMYVKK 422
>CSN3_BRAOL (P68358) COP9 signalosome complex subunit 3 (Signalosome
subunit 3) (FUSCA protein 11) (FUSCA11) (Fragments)
Length = 55
Score = 73.2 bits (178), Expect = 6e-13
Identities = 34/37 (91%), Positives = 36/37 (96%)
Query: 145 KEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYK 181
KEAEMHVLQMIQDG+I+A INQKDGMVRFLEDPEQYK
Sbjct: 19 KEAEMHVLQMIQDGQIHALINQKDGMVRFLEDPEQYK 55
>CSN3_CAEEL (Q9N425) COP9 signalosome complex subunit 3 (Signalosome
subunit 3)
Length = 501
Score = 59.3 bits (142), Expect = 8e-09
Identities = 42/164 (25%), Positives = 76/164 (45%)
Query: 2 ICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPKYASPLA 61
I I KRF+ AL LL V P + ++++KKY+L+SLI G+ + S +
Sbjct: 269 ILIELKRFEDALFLLEICVGMPAFSVQDQHLDSFKKYVLISLILKGKVDVTENGDKSAIR 328
Query: 62 QRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNIQ 121
K E+ + ++ + VE+ V + R D N +AK +V M K+ I
Sbjct: 329 HFKTKSPEYKQFSEIRFSRSSNTHSAVESLVKSAKDRLRKDGNTEIAKYLVVEMKKKTIM 388
Query: 122 RLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATIN 165
LT+ + ++ + +I L S + + Q++++ I I+
Sbjct: 389 SLTRMFTSIRISEIEELAFLKSRDQVTELIGQLVEEQRITVRID 432
>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3
(26S proteasome regulatory subunit S3) (Proteasome
subunit p58)
Length = 534
Score = 58.5 bits (140), Expect = 1e-08
Identities = 43/150 (28%), Positives = 77/150 (50%), Gaps = 7/150 (4%)
Query: 35 YKKYILVSLIRHGQFSTSLPKYASPLAQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNA 94
+K I+V L+ G+ L ++ P +R+L P L Q G +A+ ++
Sbjct: 329 HKLLIVVELLL-GEIPDRL-QFRQPSLKRSLM-----PYFLLTQAVRTGNLAKFNQVLDQ 381
Query: 95 NAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQM 154
+F+AD L ++ ++ K ++ ++ +Y +SL DIA + L+S ++AE V +
Sbjct: 382 FGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKA 441
Query: 155 IQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
I+DG I A+IN + G V+ E + Y T E
Sbjct: 442 IRDGVIEASINHEKGYVQSKEMIDIYSTRE 471
>PSD3_MOUSE (P14685) 26S proteasome non-ATPase regulatory subunit 3
(26S proteasome regulatory subunit S3) (Proteasome
subunit p58) (Transplantation antigen P91A) (Tum-P91A
antigen)
Length = 530
Score = 57.0 bits (136), Expect = 4e-08
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 35 YKKYILVSLIRHGQFSTSLPKYASPLAQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNA 94
+K I+V L+ G+ L ++ P +R+L P L Q G +A+ ++
Sbjct: 325 HKLLIVVELLL-GEIPDRL-QFRQPSLKRSLM-----PYFLLTQAVRTGNLAKFNQVLDQ 377
Query: 95 NAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQM 154
+F+ D L ++ ++ K ++ ++ +Y +SL DIA + L+S ++AE V +
Sbjct: 378 FGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKA 437
Query: 155 IQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
I+DG I A+IN + G V+ E + Y T E
Sbjct: 438 IRDGVIEASINHEKGYVQSKEMIDIYSTRE 467
>PSD3_CAEEL (Q04908) 26S proteasome non-ATPase regulatory subunit 3
(26S proteasome regulatory subunit rpn-3)
Length = 504
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 33 EAYKKYILVSLIRHGQFSTSLPKYASPLAQRNLKLFCQNPCIELAQTYNNGKVAEVEAFV 92
+A +K+++V + G+ + P+ ++ C ++L++ +G VA +
Sbjct: 294 QAVQKWVVVIGLLQGEIPDR-SVFRQPIYRK-----CLAHYLDLSRGVRDGDVARFNHNL 347
Query: 93 NANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLSLEDIANTVHLNSAKEAEMHVL 152
+FEAD+ L L ++ ++ K I++++ Y + ++DIA +++ + E E V
Sbjct: 348 EQFKTQFEADDTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDIAKKLYITNETETEYIVA 407
Query: 153 QMIQDGEIYATINQ--KDGMVRFLEDPEQ---YKTCEMIEHIDSSIQRIMAL 199
+ I DG I A I +DG R+++ E Y+T E H D+ I+ + L
Sbjct: 408 KAIADGAIDAVITSDVRDG-PRYMQSSETADIYRTSEPQAHFDTRIRYCLEL 458
>PSD3_DROME (P25161) Probable 26S proteasome non-ATPase regulatory
subunit 3 (26S proteasome subunit S3) (Diphenol oxidase
A2 component) (DOX-A2)
Length = 494
Score = 49.3 bits (116), Expect = 9e-06
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 75 ELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLSLED 134
+L Q G + V+ +F+ D+ L ++ ++ K I+ + +Y +S +D
Sbjct: 323 QLTQAVRLGNLKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQD 382
Query: 135 IANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
IA + L+SA++AE V + I+DG I AT++ +R E + Y T E
Sbjct: 383 IAKRLMLDSAEDAEFIVSKAIRDGVIEATLDPAQNFMRSKESTDIYSTRE 432
>PSD3_ANOST (Q9U5Z8) Probable 26S proteasome non-ATPase regulatory
subunit 3 (26S proteasome subunit S3) (Diphenol oxidase
A2 component) (DOX-A2)
Length = 500
Score = 48.5 bits (114), Expect = 1e-05
Identities = 31/113 (27%), Positives = 55/113 (48%)
Query: 72 PCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLS 131
P +L Q G + + +F D+ L ++ ++ K I+ + Y +S
Sbjct: 326 PYFQLTQAVRMGNLQRFGEVLENFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRIS 385
Query: 132 LEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
+DIA + L+S ++AE V + I+DG I AT++ + G +R E + Y T E
Sbjct: 386 PQDIARKLGLDSPEDAEFIVAKAIRDGVIDATLDPEKGYMRTKESTDIYSTRE 438
>PSD3_ANOGA (O61470) Probable 26S proteasome non-ATPase regulatory
subunit 3 (26S proteasome subunit S3) (Diphenol oxidase
A2 component) (DOX-A2)
Length = 496
Score = 48.1 bits (113), Expect = 2e-05
Identities = 34/114 (29%), Positives = 57/114 (49%), Gaps = 2/114 (1%)
Query: 72 PCIELAQTYNNGKVAEV-EAFVNANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTL 130
P +L Q G + E VN +F D+ L ++ ++ K I+ + Y +
Sbjct: 322 PYFQLTQAVRMGNLQRFGEVLVNFGE-QFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRI 380
Query: 131 SLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
S +DIA + L+S ++AE V + I+DG I AT++ + G +R E + Y T E
Sbjct: 381 SPQDIARKLGLDSPEDAEFIVAKAIRDGVIEATLDPEKGYMRTKESTDIYSTRE 434
>PD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulatory
subunit 3b (26S proteasome subunit S3-b)
Length = 487
Score = 46.6 bits (109), Expect = 6e-05
Identities = 33/116 (28%), Positives = 55/116 (46%), Gaps = 3/116 (2%)
Query: 72 PCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLS 131
P EL G + A F D L ++ ++ + ++ ++ +Y +S
Sbjct: 311 PYFELTNAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGLRNISISYSRIS 370
Query: 132 LEDIANTVHLNSAK---EAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
L+D+A + LNSA +AE V + I+DG I ATI+ K+G + E + Y T E
Sbjct: 371 LQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNE 426
>RPN3_YEAST (P40016) 26S proteasome regulatory subunit RPN3
Length = 523
Score = 45.1 bits (105), Expect = 2e-04
Identities = 28/86 (32%), Positives = 46/86 (52%), Gaps = 8/86 (9%)
Query: 102 DNNLGLAKQVVSSMYKRNIQRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIY 161
D+ L ++ S++ K I+ ++ TY +SL DI ++L+S + E V + I+DG I
Sbjct: 374 DDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIE 433
Query: 162 ATINQKDGMVRFL--------EDPEQ 179
A IN +DG + EDP+Q
Sbjct: 434 AKINHEDGFIETTELLNIYDSEDPQQ 459
>PD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulatory
subunit 3a (26S proteasome subunit S3-a)
Length = 488
Score = 42.7 bits (99), Expect = 8e-04
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 72 PCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLS 131
P EL G + F D L ++ ++ + ++ ++ +Y +S
Sbjct: 312 PYFELTNAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNISISYSRIS 371
Query: 132 LEDIANTVHLNSAK---EAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
L D+A + LNS +AE V + I+DG I ATI+ K+G + E + Y T E
Sbjct: 372 LPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNE 427
>PSDB_MOUSE (Q8BG32) 26S proteasome non-ATPase regulatory subunit 11
(26S proteasome regulatory subunit S9) (26S proteasome
regulatory subunit p44.5)
Length = 421
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/135 (22%), Positives = 69/135 (50%), Gaps = 8/135 (5%)
Query: 76 LAQTYNNGKVAEVEAFVNANAGRFEADNNLG--LAKQVVSSMYKRNIQRLTQTYLTLSLE 133
+AQ N +A+ E + D + LAK + ++ ++N+ R+ + + + +E
Sbjct: 289 VAQASKNRSLADFEKALTDYRAELRDDPIISTHLAK-LYDNLLEQNLIRVIEPFSRVQIE 347
Query: 134 DIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKT----CEMIEHI 189
I++ + L+ A + E + QMI D + + ++Q +G++ ++P KT E I+++
Sbjct: 348 HISSLIKLSKA-DVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNM 406
Query: 190 DSSIQRIMALSKKLT 204
+ + + +KKLT
Sbjct: 407 SKVVDSLYSKAKKLT 421
>PSD3_DAUCA (Q06364) Probable 26S proteasome non-ATPase regulatory
subunit 3 (26S proteasome subunit S3) (Nuclear antigen
21D7)
Length = 489
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 81 NNGKVAEVEAF---VNANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLSLEDIAN 137
N ++ ++E F + A F AD L ++ ++ + ++ ++ +Y +SL D+A
Sbjct: 319 NAVRIGDLELFRXVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAR 378
Query: 138 TVHLNSAK---EAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTCE 184
+ L+S +AE V + I+DG I ATI+ +G + E + Y T E
Sbjct: 379 KLRLDSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNE 428
>RPN3_SCHPO (O42897) Probable 26S proteasome regulatory subunit rpn3
Length = 497
Score = 40.8 bits (94), Expect = 0.003
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Query: 15 LLHNVVTAPMTMMNAIVIEA-YKKYILVSLIRHGQFSTSLPKYASPLAQRNLKLFCQNPC 73
L+ + AP T+ +EA YK +I+V L+ +P+ Q++L+ P
Sbjct: 271 LVSAIRKAPNTVYAVQFLEAVYKLHIVVQLLMG-----EIPERRI-FRQKSLEKTLV-PY 323
Query: 74 IELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSMYKRNIQRLTQTYLTLSLE 133
+ ++Q G + ++ F D L ++ ++ K ++ ++ +Y +SL
Sbjct: 324 LRISQAVRIGDLCAFTDALSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLR 383
Query: 134 DIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTCEMIEHIDSSI 193
D+ + L+S + AE V + I+DG I A+I+ + + E + Y T + + I
Sbjct: 384 DVCIKLGLDSEESAEYIVAKGIRDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERI 443
Query: 194 QRIMAL 199
Q +AL
Sbjct: 444 QFCLAL 449
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,006,376
Number of Sequences: 164201
Number of extensions: 901104
Number of successful extensions: 2526
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2491
Number of HSP's gapped (non-prelim): 55
length of query: 250
length of database: 59,974,054
effective HSP length: 108
effective length of query: 142
effective length of database: 42,240,346
effective search space: 5998129132
effective search space used: 5998129132
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC138464.6