BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138464.11 - phase: 0
(292 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (Chromatin structu... 35 0.28
XYL1_CANPA (Q6Y0Z3) NADH-dependent D-xylose reductase (EC 1.1.1.... 33 0.63
YK01_YEAST (P36117) Hypothetical 102.5 kDa protein in YPT52-DBP7... 33 0.83
KI67_HUMAN (P46013) Antigen KI-67 33 0.83
PTH2_SCHPO (O13830) Probable peptidyl-tRNA hydrolase 2 (EC 3.1.1... 31 3.1
ARP_PLAFA (P04931) Asparagine-rich protein (AG319) (ARP) (Fragment) 31 3.1
MYBH_DICDI (P34127) Myb-like protein (Fragment) 31 4.1
CH62_RHIME (P35470) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL... 31 4.1
YCX9_CHLRE (Q32065) Hypothetical 341.7 kDa protein in psbD-psbC ... 30 5.4
SNXH_HUMAN (Q15036) Sorting nexin 17 30 5.4
MYSA_DICDI (P22467) Myosin IA heavy chain (Myosin-like protein a... 30 5.4
TGAB_TOBAC (P14233) TGACG-sequence specific DNA-binding protein ... 30 7.0
GLN3_YEAST (P18494) Nitrogen regulatory protein GLN3 30 7.0
YPG1_DICSP (P10511) Hypothetical plasmid pDG1 103 kDa protein 30 9.2
IE68_HHV2 (P14379) Immediate-early protein IE4 (IE68) (Fragment) 30 9.2
>STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (Chromatin structure
remodeling complex protein STH1) (SNF2 homolog)
Length = 1359
Score = 34.7 bits (78), Expect = 0.28
Identities = 34/138 (24%), Positives = 60/138 (42%), Gaps = 17/138 (12%)
Query: 43 EQTPANQSTTASLPGKRTKRKYVRIRRNNGYIKKNSCKKSSPEEEIVVQHSNSNDEMKRN 102
E+T A++ TTAS +R+ RK I K+N+ ++S+ +E + +E+K +
Sbjct: 1131 EETNADKETTASRSKRRSSRKKRTISIVTAEDKENTQEESTSQEN---GGAKVEEEVKSS 1187
Query: 103 LAVVTLQLMPEKAAATSNVDLNLNLNLTVENIQILDNLNRSQNNPD----------LETM 152
+ +K V + LN +EN ++ R++ P+ +T
Sbjct: 1188 SVEIINGSESKKKKPKLTVKIKLNKTTVLEN----NDGKRAEEKPESKSPAKKTAAKKTK 1243
Query: 153 NAGKFLDLLPAVEKAVVE 170
K L + P VEK V E
Sbjct: 1244 TKSKSLGIFPTVEKLVEE 1261
>XYL1_CANPA (Q6Y0Z3) NADH-dependent D-xylose reductase (EC 1.1.1.-)
(XR)
Length = 324
Score = 33.5 bits (75), Expect = 0.63
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 89 VVQHSNSNDEMKRNLAVVTLQLMPEKAAATSNVDLNLNLN 128
V+ SNS D M +NL+V+ +L + A + +D NL N
Sbjct: 273 VIPRSNSPDRMAQNLSVIDFELTQDDLQAIAELDCNLRFN 312
>YK01_YEAST (P36117) Hypothetical 102.5 kDa protein in YPT52-DBP7
intergenic region
Length = 915
Score = 33.1 bits (74), Expect = 0.83
Identities = 24/112 (21%), Positives = 45/112 (39%), Gaps = 8/112 (7%)
Query: 19 NNDNNIFNGIMLRFRPIAPKPVTGEQTPANQSTTASLPGKRTKRKYVR--------IRRN 70
+ND +I +G + AP TP QS SL G++ R + IR+N
Sbjct: 741 DNDGDIASGFNFKLSTSAPSENVNSHTPILQSLNMSLDGRKKNRASLHATSVLPSTIRQN 800
Query: 71 NGYIKKNSCKKSSPEEEIVVQHSNSNDEMKRNLAVVTLQLMPEKAAATSNVD 122
N + + S +E+ + + N K + + ++ + + + VD
Sbjct: 801 NQHFNDINQMLGSSDEDAFPKSQSLNFNKKLPILKINDNVIQSNSNSNNRVD 852
>KI67_HUMAN (P46013) Antigen KI-67
Length = 3256
Score = 33.1 bits (74), Expect = 0.83
Identities = 33/129 (25%), Positives = 47/129 (35%), Gaps = 9/129 (6%)
Query: 32 FRPIAPKPVTGEQTPANQSTTASLPGKRTKRKYVRIRRNNGYIKKNSCKKSSPEEEIVVQ 91
FR + P T T A++ TT + K + N K S KK+ EEE +
Sbjct: 1835 FRELFQTPCTDNPT-ADEKTTKKILCKSPQSDPADTPTNTKQRPKRSLKKADVEEEFLAF 1893
Query: 92 HSNSNDEMKRNLAVVTLQLMPEKAAATSNVDLNLNLNLTVENIQILDNLNRSQNNPDLET 151
+ K + KAA D+N + VE + +L NL S+ P
Sbjct: 1894 RKLTPSAGKA--------MHTPKAAVGEEKDINTFVGTPVEKLDLLGNLPGSKRRPQTPK 1945
Query: 152 MNAGKFLDL 160
A DL
Sbjct: 1946 EKAKALEDL 1954
>PTH2_SCHPO (O13830) Probable peptidyl-tRNA hydrolase 2 (EC
3.1.1.29) (PTH 2)
Length = 205
Score = 31.2 bits (69), Expect = 3.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 62 RKYVRIRRNNGYIKKNSCKKSSPEEEIVVQHSNSND 97
RKY + GY KN+ K S+PE+E V SN D
Sbjct: 29 RKYSVADASRGYSSKNANKASNPEKESPVSVSNDED 64
>ARP_PLAFA (P04931) Asparagine-rich protein (AG319) (ARP) (Fragment)
Length = 537
Score = 31.2 bits (69), Expect = 3.1
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 32/139 (23%)
Query: 15 NPSLNNDNNIFNGIMLRFRPIAPKPVTGEQTPANQSTTASLPGKRTKRKYVRIRRNNGYI 74
N + NN+NN NG+ ++ N + S+ KR NN I
Sbjct: 194 NNNNNNNNNNNNGVFSNYQN------------NNMNRNNSINIKRNLN-------NNNNI 234
Query: 75 KKNSCKKSSPEEEIVVQHSNSNDEMKRNLAVVTLQLMPEKAAATSNVDLNLNLNLTVENI 134
N K S ++ Q+SN+N M N K + +N++ N+N N+ N
Sbjct: 235 NNNMNKMGSQDKN---QNSNNNFYMNYNY-------QNRKNSMNNNMNNNMNNNM---NH 281
Query: 135 QILDNLNRSQNNPDLETMN 153
+ +N+N + NN MN
Sbjct: 282 NMNNNMNHNMNNNMNHNMN 300
>MYBH_DICDI (P34127) Myb-like protein (Fragment)
Length = 451
Score = 30.8 bits (68), Expect = 4.1
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 69 RNNGYIKKNSCKKSSPEEEIVVQHSNSNDEMKRNLAVVTLQLMPEKAAATSNVDLNLNLN 128
+NN N+ ++ EEE + + +D+ ++N +++ K + +N +L N+N
Sbjct: 47 QNNNNNNNNNNNNNNEEEE--EEDDDDDDDSQQNRHNISIPFTINKNSINNNNNLINNIN 104
Query: 129 LTVENIQILDNLNRSQNNPDL 149
+ N+ +N+N + NN ++
Sbjct: 105 NNINNMN--NNMNNNNNNNNM 123
>CH62_RHIME (P35470) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL
protein 2)
Length = 542
Score = 30.8 bits (68), Expect = 4.1
Identities = 31/112 (27%), Positives = 53/112 (46%), Gaps = 12/112 (10%)
Query: 115 AAATSNVDLNLNLNLTVENI--QILDNLNRSQNNPDLE---TMNAGKFLD----LLPAVE 165
A+ + +DL ++L VE I ++ +N + N ++ T++A + L A+E
Sbjct: 108 ASGMNPMDLKRGIDLAVEAIVKELRNNARKVSKNAEIAQVATISANGDAEIGRYLAEAME 167
Query: 166 KAVVESWITVESVTGMCMVVEKVKNIETD---TCPCFITDGNGKVLRVNDAY 214
K E ITVE + +E V+ +E D P FIT+ + + DAY
Sbjct: 168 KVGNEGVITVEEAKTAEIELEVVEGMEFDRGYLSPYFITNQEKMRVELEDAY 219
>YCX9_CHLRE (Q32065) Hypothetical 341.7 kDa protein in psbD-psbC
intergenic region (ORF2971) (ORFB)
Length = 2971
Score = 30.4 bits (67), Expect = 5.4
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 60 TKRKYVRIRRNNG-----YIKKNSCKKSSPEEEIVVQHSNSNDEMKRNLAVVTLQLMPEK 114
+K + V NNG +IK N+ K S E +V + + ++ K NL T + P K
Sbjct: 118 SKVQVVTNNLNNGMNSKEFIKANNLKPSLRAAESLVLNHLTYNKFKENLYFKTNNIQPTK 177
Query: 115 AAATSNVDLNLNLN 128
+ +TS LN+ N
Sbjct: 178 SKSTSLFFLNILSN 191
>SNXH_HUMAN (Q15036) Sorting nexin 17
Length = 470
Score = 30.4 bits (67), Expect = 5.4
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 54 SLPGKRTKRKYVRIR---RNNGYIKKNSCKKSSPEEEIVVQHSNSNDEMKRNLAVVTLQL 110
SL K +K++++R+ R+ GY++ ++C PE++ V S N E+ L + QL
Sbjct: 249 SLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQL 308
>MYSA_DICDI (P22467) Myosin IA heavy chain (Myosin-like protein
abmA)
Length = 994
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/39 (38%), Positives = 22/39 (55%)
Query: 175 VESVTGMCMVVEKVKNIETDTCPCFITDGNGKVLRVNDA 213
+ S+TG VE+VK ++ P GNGK LR N++
Sbjct: 122 IASITGSSTEVERVKKTILESNPLLEAFGNGKTLRNNNS 160
>TGAB_TOBAC (P14233) TGACG-sequence specific DNA-binding protein
TGA-1B (TGA1b) (HSBF) (Fragment)
Length = 242
Score = 30.0 bits (66), Expect = 7.0
Identities = 19/71 (26%), Positives = 38/71 (52%), Gaps = 9/71 (12%)
Query: 75 KKNSCKKSSPEEEIVVQHSNSNDEMKRNLAVVTLQLMPEKAAATSNVDLNLNLNLTVENI 134
+ NS K + EE+I ++ N+N +L L +K++ SN N+N++ + N+
Sbjct: 122 ENNSIKNGAVEEKIKLEGVNANISKCSSL------LKRKKSSEDSN---NINIHQKLTNV 172
Query: 135 QILDNLNRSQN 145
+ DN+N ++
Sbjct: 173 ALSDNVNNDED 183
>GLN3_YEAST (P18494) Nitrogen regulatory protein GLN3
Length = 730
Score = 30.0 bits (66), Expect = 7.0
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 39 PVTGEQTPANQSTTASLPGKRTKRKYVRIRRNNGYIKKNSCKKSSPEEEIVVQHSNSNDE 98
P + TP+ +T AS T K +R R+ + +++NS + PEE I N+N+
Sbjct: 364 PNIAQNTPSAPAT-ASTSVTTTNAKPIRSRKKS--LQQNSLSRVIPEEIIRDNIGNTNNI 420
Query: 99 MKRNLAVVTLQLMPEKAAATSNVDLNLNLNLTVENIQILDNLNRSQNNPDLETMN 153
+ N +P S + N N + L++ N ++N + T N
Sbjct: 421 LNVNRGGYNFNSVPSPVLMNSQSYNSSNANFNGASNANLNSNNLMRHNSNTVTPN 475
>YPG1_DICSP (P10511) Hypothetical plasmid pDG1 103 kDa protein
Length = 906
Score = 29.6 bits (65), Expect = 9.2
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 36 APKPVTGEQTPANQSTTASLPGKRTKRKYVRIRRNNGYIKKNSCKKSSPEEEIV------ 89
APKP T + TPA + ++ G T + I NN ++ + SP I+
Sbjct: 270 APKPTTPKPTPAPRKISSRKNGGLTNVRVDHISVNNIPTPSDTNESLSPPSTIISSSNSI 329
Query: 90 ----VQHSNSNDEMKRNLAVVTLQLMPEKAAATSNVDLNLNLNLTVENIQILDNLNRSQN 145
V+ S E+ + + K +D N + + I I L N
Sbjct: 330 KQCLVEVLESKGEISIDKIKSIFNCLQNKQYTGDLIDSMFQQNKSEKVITISSKLFNMSN 389
Query: 146 NPDLETMNAGKFLD 159
D + +N K D
Sbjct: 390 KVDYDEINFAKLKD 403
>IE68_HHV2 (P14379) Immediate-early protein IE4 (IE68) (Fragment)
Length = 197
Score = 29.6 bits (65), Expect = 9.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 35 IAPKPVTGEQTPANQSTTASLPGKRTKRKYVRIRRNNGY----IKKNSCKKSSPEEEI 88
I P P + TPAN + + LPG R +R+ V + I+ S S E+E+
Sbjct: 4 IPPDPPALDTTPANHAPPSPLPGSRKRRRPVLPSSSESEGKPDIESESSSTESSEDEV 61
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,167,147
Number of Sequences: 164201
Number of extensions: 1367569
Number of successful extensions: 4168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4162
Number of HSP's gapped (non-prelim): 21
length of query: 292
length of database: 59,974,054
effective HSP length: 109
effective length of query: 183
effective length of database: 42,076,145
effective search space: 7699934535
effective search space used: 7699934535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Medicago: description of AC138464.11