BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138453.6 - phase: 0 /pseudo
         (667 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...    40  0.026
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...    38  0.075

>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
           Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score = 39.7 bits (91), Expect = 0.026
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 98  NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
           +N+  +FC + GI +        Q NGV+ER  +    + +      K+ +   G+ +  
Sbjct: 557 SNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLT 616

Query: 150 CNILLNMLPSRVM--HKKTPFETWFVTNQIYKV*RFLFVFAFILYNRLKEK 198
              L+N +PSR +    KTP+E W       K    L VF   +Y  +K K
Sbjct: 617 ATYLINRIPSRALVDSSKTPYEMWHNKKPYLK---HLRVFGATVYVHIKNK 664


>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 38.1 bits (87), Expect = 0.075
 Identities = 21/82 (25%), Positives = 38/82 (45%), Gaps = 8/82 (9%)

Query: 98  NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
           + +F+++C  +GI H        Q NGV ER  +  + + +    M K+ +   G+ +Q 
Sbjct: 557 SREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQT 616

Query: 150 CNILLNMLPSRVMHKKTPFETW 171
              L+N  PS  +  + P   W
Sbjct: 617 ACYLINRSPSVPLAFEIPERVW 638


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.367    0.164    0.589 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,290,538
Number of Sequences: 164201
Number of extensions: 1861270
Number of successful extensions: 9788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9787
Number of HSP's gapped (non-prelim): 3
length of query: 667
length of database: 59,974,054
effective HSP length: 117
effective length of query: 550
effective length of database: 40,762,537
effective search space: 22419395350
effective search space used: 22419395350
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 69 (31.2 bits)