BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138451.12 - phase: 0
(133 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CORA_MEDSA (Q07202) Cold and drought-regulated protein CORA 108 2e-24
GRPA_MEDFA (Q09134) Abscisic acid and environmental stress induc... 99 1e-21
GRP_TOBAC (P23137) Glycine-rich protein precursor 74 4e-14
GRP1_CHERU (P11898) Glycine-rich protein HC1 74 4e-14
GRP9_DAUCA (P37703) Glycine-rich protein DC9.1 73 9e-14
GRP_HORVU (P17816) Glycine-rich cell wall structural protein pre... 65 3e-11
RB56_HUMAN (Q92804) TATA-binding protein associated factor 2N (R... 64 4e-11
NO24_SOYBN (P04145) Nodulin 24 precursor (N-24) 62 3e-10
MLE_DROME (P24785) Dosage compensation regulator (Male-less prot... 61 5e-10
GRP_DAUCA (Q03878) Glycine-rich RNA-binding protein 60 8e-10
GRP7_DAUCA (P37704) Glycine-rich protein DC7.1 precursor 59 1e-09
GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment) 59 1e-09
GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2 59 2e-09
DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (Nuclear DNA he... 58 4e-09
ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 57 9e-09
ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 57 9e-09
GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 57 9e-09
IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2 55 3e-08
GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A 55 3e-08
ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 55 3e-08
>CORA_MEDSA (Q07202) Cold and drought-regulated protein CORA
Length = 204
Score = 108 bits (271), Expect = 2e-24
Identities = 71/146 (48%), Positives = 88/146 (59%), Gaps = 18/146 (12%)
Query: 1 MDSKKAILILGLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYG---SYGGG 57
MDSKKAIL+L LLA+ L ISS +SARDLTE S++ +KE ++TNE+NDAKYG ++GGG
Sbjct: 1 MDSKKAILMLSLLAMAL-ISSVMSARDLTETSTDAKKEVVEKTNEVNDAKYGGGYNHGGG 59
Query: 58 YPGRGGGGNYGGGYPRNRGGYPGNRGG--------NYGGGYPGNRGGNYCRYGCCGDRYY 109
Y GGG N+GGGY GGY GG N GGG+ G+ GG Y G G
Sbjct: 60 Y--NGGGYNHGGGYNHGGGGYHNGGGGYNHGGGGYNGGGGHGGHGGGGYNGGGGHGGHGG 117
Query: 110 GSCRKCCSYAG----EAVAMQTENNT 131
G + G E+VA+QTE T
Sbjct: 118 GGYNGGGGHGGHGGAESVAVQTEEKT 143
Score = 52.4 bits (124), Expect = 2e-07
Identities = 28/60 (46%), Positives = 36/60 (59%), Gaps = 4/60 (6%)
Query: 38 EADDQTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGN 97
+ +++TNE+NDAKYG GRGG + GGGY N GG G GG+ G G G GG+
Sbjct: 138 QTEEKTNEVNDAKYGGGSNYNDGRGGYNHGGGGY--NHGG--GGHGGHGGHGGHGGHGGH 193
>GRPA_MEDFA (Q09134) Abscisic acid and environmental stress
inducible protein
Length = 159
Score = 99.4 bits (246), Expect = 1e-21
Identities = 71/168 (42%), Positives = 85/168 (50%), Gaps = 58/168 (34%)
Query: 15 IILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSY----GGGYPGRG---GGGNY 67
++LLISSEVSARDLTE +S+ +KE ++TNE+NDAKYG GGGY G G GGG Y
Sbjct: 1 MVLLISSEVSARDLTETTSDAKKEVVEKTNEVNDAKYGGGYNHGGGGYNGGGYNHGGGGY 60
Query: 68 ---------GGGYPRNRGGYP------GNRGGNY-----------------GGGYPG--- 92
GGGY GGY N GG Y GGGY G
Sbjct: 61 NNGGGYNHGGGGYNNGGGGYNHGGGGYNNGGGGYNHGGGGYNNGGGGYNHGGGGYNGGGY 120
Query: 93 -------NRGGNYCRYGCCGDRYYGSCRKCCSYAGEAVAMQTENNTRN 133
N GG C+Y C G +CCS+A E VAMQ ++NT+N
Sbjct: 121 NHGGGGYNHGGGGCQYHCHG--------RCCSHA-EFVAMQAKDNTQN 159
>GRP_TOBAC (P23137) Glycine-rich protein precursor
Length = 109
Score = 74.3 bits (181), Expect = 4e-14
Identities = 54/131 (41%), Positives = 64/131 (48%), Gaps = 27/131 (20%)
Query: 5 KAILILGL-LAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGG-GYPGRG 62
KA L LGL LA LISSEV A +L E S+ + + ++ + Y GG GY G G
Sbjct: 4 KAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDGENGVDVDGRGGYNDVGGDGYYG-G 62
Query: 63 GGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGSCRKCCSYAGEA 122
G G GGGY R RG CRYGCC Y G C++CCSYAGEA
Sbjct: 63 GRGRGGGGYKR-RG----------------------CRYGCCRKGYNG-CKRCCSYAGEA 98
Query: 123 VAMQTENNTRN 133
+ TE N
Sbjct: 99 MDKVTEAQPHN 109
>GRP1_CHERU (P11898) Glycine-rich protein HC1
Length = 144
Score = 74.3 bits (181), Expect = 4e-14
Identities = 54/135 (40%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 5 KAILILGL-LAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKY----------GS 53
K L+LGL +A +LISSEV+AR+L E ++ T+ + Y G
Sbjct: 4 KIFLLLGLSIAFAILISSEVAARELAETAAKTEGYNNGGGYHNGGGGYNNGGGYHNGGGG 63
Query: 54 Y--GGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGS 111
Y GGGY GGG N GGGY GGY N GG++ GG N GG Y +G G Y+
Sbjct: 64 YNNGGGYHNGGGGYNNGGGYHNGGGGY-NNGGGHHNGGGGYNNGGGY--HGGGGSCYHYC 120
Query: 112 CRKCCSYAGEAVAMQ 126
+CCS A EA A++
Sbjct: 121 HGRCCS-AAEAKALE 134
>GRP9_DAUCA (P37703) Glycine-rich protein DC9.1
Length = 144
Score = 73.2 bits (178), Expect = 9e-14
Identities = 55/135 (40%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 5 KAILILGL-LAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGG 63
K L+LGL +A +LISSEV+AR+L E ++ T+ + Y + GGGY GG
Sbjct: 4 KIFLLLGLSIAFAILISSEVAARELAETAAKTEGYNNGGGYHNGGGGYNN-GGGYHNGGG 62
Query: 64 GGNYGGGYPRNRGGYPGNRGGNY---GGGYPG-----NRGGNY----CRYGCCGDRYYGS 111
G N GGGY GGY N GG Y GGGY N GG Y +G G Y+
Sbjct: 63 GYNNGGGYHNGGGGY--NNGGGYHNGGGGYNNGGGHHNGGGGYNNGGGHHGGGGSCYHYC 120
Query: 112 CRKCCSYAGEAVAMQ 126
+CCS A EA A++
Sbjct: 121 HGRCCS-AAEAKALE 134
>GRP_HORVU (P17816) Glycine-rich cell wall structural protein
precursor
Length = 200
Score = 65.1 bits (157), Expect = 3e-11
Identities = 34/80 (42%), Positives = 41/80 (50%), Gaps = 10/80 (12%)
Query: 52 GSYGGG-----YPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGN-----RGGNYCRY 101
G YGGG + G GGGG GGG GG G G GGGYPG+ GG C++
Sbjct: 115 GGYGGGGGYHGHGGEGGGGYGGGGGYHGHGGEGGGGYGGGGGGYPGHGGGGGHGGGRCKW 174
Query: 102 GCCGDRYYGSCRKCCSYAGE 121
GCCG + +CC+ A E
Sbjct: 175 GCCGHGFLHHGCRCCARADE 194
Score = 58.9 bits (141), Expect = 2e-09
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 11 GLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRG----GGGN 66
GL+ + LL+++ + AS++ +A + NE + GGG+ G G GGG
Sbjct: 7 GLVVLALLLAAAILV-----ASADEHPQAKKEENEAGVENFFHGGGGHHGHGRGGHGGGG 61
Query: 67 Y--GGGYPRNRGGYPGNRG--GNYGGGYPGNRGGNYCRYG 102
Y GGGY GGYPG G G GGGYPG+ G YG
Sbjct: 62 YGGGGGYGGGGGGYPGGGGGYGGGGGGYPGHGGEGGGGYG 101
>RB56_HUMAN (Q92804) TATA-binding protein associated factor 2N
(RNA-binding protein 56) (TAFII68) (TAF(II)68)
Length = 592
Score = 64.3 bits (155), Expect = 4e-11
Identities = 42/78 (53%), Positives = 47/78 (59%), Gaps = 8/78 (10%)
Query: 52 GSYGGGYPG-RGGG--GNYGGGYPRNRGGYPGNRGGNYG---GGYPGNRGG-NYCRYGCC 104
G GGGY G RGGG G+ GGGY +RGGY G+RGG YG GGY G+RGG R G
Sbjct: 457 GDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYG 516
Query: 105 GDR-YYGSCRKCCSYAGE 121
GDR YG R Y G+
Sbjct: 517 GDRGGYGGDRSRGGYGGD 534
Score = 58.9 bits (141), Expect = 2e-09
Identities = 37/75 (49%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 53 SYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNY----GGGYPGNRGGNY--CRYGCCGD 106
S GGGY G GG YGG R+ GGY G+RGG Y GGGY G+RGG Y R G GD
Sbjct: 432 SSGGGYSGDRSGGGYGGD--RSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGD 489
Query: 107 RYYGSCRKCCSYAGE 121
R G Y G+
Sbjct: 490 RGGGYGGDRGGYGGD 504
Score = 52.8 bits (125), Expect = 1e-07
Identities = 36/76 (47%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYG----GGYPGNRGGNYCRYGCCGDR 107
G YGG RGG G GGY +RGGY G+RGG G GGY G+RGG G GDR
Sbjct: 492 GGYGGD---RGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGG---SGYGGDR 545
Query: 108 Y--YGSCRKCCSYAGE 121
YG R Y G+
Sbjct: 546 SGGYGGDRSGGGYGGD 561
Score = 52.0 bits (123), Expect = 2e-07
Identities = 39/88 (44%), Positives = 44/88 (49%), Gaps = 8/88 (9%)
Query: 51 YGSYGGGYPG-RGGGGNYGGGY--PRNRGGYPGNRGGN--YGGGYPGNRGGNYCRYGCCG 105
YG GGY G RGG G GGY R+RGGY G+RGG YGG G GG+ G G
Sbjct: 501 YGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGG 560
Query: 106 DRYYGSCRKCCSYAGEAVAMQTENNTRN 133
DR G Y G+ M N+ RN
Sbjct: 561 DRGGGYGGDRGGYGGK---MGGRNDYRN 585
Score = 50.4 bits (119), Expect = 7e-07
Identities = 29/56 (51%), Positives = 34/56 (59%), Gaps = 9/56 (16%)
Query: 52 GSYGGGYPGRGGGGNY--GGGYPRNR--GGYPGNR-----GGNYGGGYPGNRGGNY 98
G YGG G G GG+ GGGY +R GGY G+R GG+ GGGY G+RGG Y
Sbjct: 416 GGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGY 471
Score = 48.5 bits (114), Expect = 3e-06
Identities = 33/79 (41%), Positives = 38/79 (47%), Gaps = 20/79 (25%)
Query: 40 DDQTNELNDAKYGSYGG--GYPGRGGGGNYGGGYPRNR------------GGYPGNR-GG 84
+D D + YGG GY GRGG G GGY +R GGY G+R GG
Sbjct: 385 EDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGG 444
Query: 85 NYGG-----GYPGNRGGNY 98
YGG GY G+RGG Y
Sbjct: 445 GYGGDRSGGGYGGDRGGGY 463
Score = 46.2 bits (108), Expect = 1e-05
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 36 QKEADDQTNELNDAKYGSYGGGYPGRGGGGNYG----GGYPRNRGGYPGNR-GGNY---- 86
++ + +Q NE GG + GRG GG G GG +RGGY G+R GG Y
Sbjct: 372 RRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDR 431
Query: 87 --GGGYPGNRGGNYCRYGCCGDRYYG 110
GGGY G+R G G GDR G
Sbjct: 432 SSGGGYSGDRSGG----GYGGDRSGG 453
Score = 37.0 bits (84), Expect = 0.008
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 1/48 (2%)
Query: 42 QTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRN-RGGYPGNRGGNYGG 88
Q + + ++YG GY G GGG GGY ++ RG G+ GG+ GG
Sbjct: 161 QDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGG 208
Score = 36.2 bits (82), Expect = 0.013
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 57 GYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYG 110
G RG GG+ GGG R RGGY + G G G+RGG + +G G R YG
Sbjct: 171 GEDNRGYGGSQGGG--RGRGGYDKDGRGPMTGSSGGDRGG-FKNFG--GHRDYG 219
Score = 35.4 bits (80), Expect = 0.022
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 61 RGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYY---GSCRKC 115
RGGG GG R RGGY G RGG G G G C CG+ + SC +C
Sbjct: 326 RGGGS---GGGRRGRGGYRG-RGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQC 379
Score = 29.6 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 53 SYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRG 95
SYG Y G G GY ++ GGY + +Y N+G
Sbjct: 45 SYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNNQG 87
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 32 SSNTQKEADDQTNELNDAK-YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGG--NYGG 88
S +TQ + D + D + YG GG GRGG G G G G+RGG N+GG
Sbjct: 157 SHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSG--GDRGGFKNFGG 214
>NO24_SOYBN (P04145) Nodulin 24 precursor (N-24)
Length = 147
Score = 61.6 bits (148), Expect = 3e-10
Identities = 53/146 (36%), Positives = 64/146 (43%), Gaps = 30/146 (20%)
Query: 1 MDSKKAILILGLLAIILLISSEVSARDLTEASSNTQK-------------EADDQTNELN 47
M SK AILILGLLA++LLI+SEV+AR+L EA Q+ EA +TNE+
Sbjct: 1 MGSKMAILILGLLAMLLLITSEVAARNLKEAGEAVQETNEVADAKLVAAGEAVQETNEVA 60
Query: 48 DAKYGSYGGGYPGRG--------GGGNYGGGYPRNRGGY------PGNRGGNYGGGYPGN 93
D K G G G G RN+ GY G GN+ GG
Sbjct: 61 DTKLVGAGEAVQETNEVADTKLVGAG--GVVKQRNKVGYGKLVGVGGYDYGNWNGGQRSP 118
Query: 94 RG-GNYCRYGCCGDRYYGSCRKCCSY 118
G G C GCC G CC +
Sbjct: 119 YGTGAICMRGCCFPSSLGGSVSCCPH 144
>MLE_DROME (P24785) Dosage compensation regulator (Male-less protein)
(No action potential protein)
Length = 1293
Score = 60.8 bits (146), Expect = 5e-10
Identities = 34/60 (56%), Positives = 35/60 (57%), Gaps = 6/60 (10%)
Query: 51 YGSYGGGYPGRGGG-GNYGGGYPRNRGGYPGNRG-GNYGGGYPGNRGGNYCRYGCCGDRY 108
YG+ GGGY GGG GN GGGY N GGY N G GN GGGY N GG YG G Y
Sbjct: 1205 YGNNGGGYGNNGGGYGNIGGGYGNNAGGYGNNGGYGNNGGGYRNNGGG----YGNNGGGY 1260
Score = 57.4 bits (137), Expect = 5e-09
Identities = 28/52 (53%), Positives = 29/52 (54%), Gaps = 2/52 (3%)
Query: 47 NDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRG--GNYGGGYPGNRGG 96
N YG+ GGGY GG GGY N GGY N G GN GGGY NRGG
Sbjct: 1215 NGGGYGNIGGGYGNNAGGYGNNGGYGNNGGGYRNNGGGYGNNGGGYGNNRGG 1266
Score = 53.1 bits (126), Expect = 1e-07
Identities = 32/70 (45%), Positives = 38/70 (53%), Gaps = 11/70 (15%)
Query: 42 QTNELNDAKYG------SYGGGYPGRGGG-GNYGGGYPRNRGGYPGNRGGNYG--GGYPG 92
+T ++ +G ++GGGY GGG GN GGGY GGY GN G YG GGY G
Sbjct: 1183 ETGRFTNSSFGRRGNGRTFGGGYGNNGGGYGNNGGGYGNIGGGY-GNNAGGYGNNGGY-G 1240
Query: 93 NRGGNYCRYG 102
N GG Y G
Sbjct: 1241 NNGGGYRNNG 1250
Score = 53.1 bits (126), Expect = 1e-07
Identities = 29/59 (49%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 47 NDAKYGSYGGGYPGRGGG-GNYGGGYPRNRGG----YPGNR--GGNYGGGYPGNRGGNY 98
N+ YG+ GGGY GGG GN GGGY NRGG + NR GG + G G R GN+
Sbjct: 1235 NNGGYGNNGGGYRNNGGGYGNNGGGYGNNRGGFGDSFESNRGSGGGFRNGDQGGRWGNF 1293
Score = 49.7 bits (117), Expect = 1e-06
Identities = 31/61 (50%), Positives = 34/61 (54%), Gaps = 5/61 (8%)
Query: 52 GSYG--GGYPGRGGG-GNYGGGYPRNRGGYPGNRGGNYGGGYPGNRG-GNYCRYGCCGDR 107
G YG GGY GGG N GGGY N GGY NRGG +G + NRG G R G G R
Sbjct: 1231 GGYGNNGGYGNNGGGYRNNGGGYGNNGGGYGNNRGG-FGDSFESNRGSGGGFRNGDQGGR 1289
Query: 108 Y 108
+
Sbjct: 1290 W 1290
>GRP_DAUCA (Q03878) Glycine-rich RNA-binding protein
Length = 157
Score = 60.1 bits (144), Expect = 8e-10
Identities = 40/90 (44%), Positives = 46/90 (50%), Gaps = 8/90 (8%)
Query: 22 EVSARDLTEASSNTQKEADDQTNELNDAKY-GSYGGGYPGRGGGGNYGGGYPRNRGGYPG 80
E S RD E + +E D + +N+A+ GS GGG GGGG YGGG GGY G
Sbjct: 57 EKSMRDAIEGMNG--QELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGG-----GGYGG 109
Query: 81 NRGGNYGGGYPGNRGGNYCRYGCCGDRYYG 110
R G GGGY G R G YG G Y G
Sbjct: 110 RREGGGGGGYGGRREGGGGGYGGGGGGYGG 139
Score = 46.6 bits (109), Expect = 1e-05
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 52 GSYGGGYPGR--GGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGN 97
G GGGY GR GGGG YGGG GGY G R G GGY G GG+
Sbjct: 113 GGGGGGYGGRREGGGGGYGGG----GGGYGGRREGG-DGGYGGGGGGS 155
>GRP7_DAUCA (P37704) Glycine-rich protein DC7.1 precursor
Length = 96
Score = 59.3 bits (142), Expect = 1e-09
Identities = 41/103 (39%), Positives = 53/103 (50%), Gaps = 30/103 (29%)
Query: 5 KAILILGL-LAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGG 63
K L+LGL +A LLISSEV+ARDL+E ++ + S GG+ G GG
Sbjct: 4 KIFLLLGLSIAFALLISSEVAARDLSETTT----------------EGASLDGGHHGGGG 47
Query: 64 GGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG--NYCRYGCC 104
GG+Y GG G GG++ GG G GG +YC CC
Sbjct: 48 GGHYSGG---------GGHGGSHHGG--GGHGGCHHYCHGSCC 79
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)
Length = 142
Score = 59.3 bits (142), Expect = 1e-09
Identities = 39/89 (43%), Positives = 46/89 (50%), Gaps = 14/89 (15%)
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKY-----GSYGGGYPG-RGGGGNYG----- 68
S+E + R E + KE D + +N+A+ G GGGY G RGGGG YG
Sbjct: 36 STEEAMRSAIEGMNG--KELDGRNITVNEAQSRGGRGGGGGGGYGGGRGGGGGYGRRDGG 93
Query: 69 -GGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
GGY GGY G RGG GGGY G GG
Sbjct: 94 GGGYGGGGGGYGGGRGGYGGGGYGGGGGG 122
Score = 45.8 bits (107), Expect = 2e-05
Identities = 28/53 (52%), Positives = 30/53 (55%), Gaps = 5/53 (9%)
Query: 48 DAKYGSYGGGYPGRGGG-GNY-GGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
D G YGGG G GGG G Y GGGY GGY GG+ GGG GN GN+
Sbjct: 91 DGGGGGYGGGGGGYGGGRGGYGGGGYGGGGGGY---GGGSRGGGGYGNSDGNW 140
Score = 45.4 bits (106), Expect = 2e-05
Identities = 26/47 (55%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGY-PGNRGG 96
YG GG G GGG GGGY RGGY G G GGGY G+RGG
Sbjct: 87 YGRRDGGGGGYGGG---GGGYGGGRGGYGGGGYGGGGGGYGGGSRGG 130
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2
Length = 168
Score = 58.5 bits (140), Expect = 2e-09
Identities = 40/86 (46%), Positives = 44/86 (50%), Gaps = 9/86 (10%)
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKY---GSYGGGYPGRGGG--GNYGGGYPRN 74
SSE S D E + KE D + +N A+ G GGGY G GGG G GGGY
Sbjct: 57 SSEQSMLDAIENMNG--KELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGG 114
Query: 75 RGGYPGNR--GGNYGGGYPGNRGGNY 98
GGY G R GG YGGG G GG Y
Sbjct: 115 GGGYGGRREGGGGYGGGGYGGGGGGY 140
Score = 55.8 bits (133), Expect = 2e-08
Identities = 30/50 (60%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 51 YGSYGGGYPGR--GGGGNYGGGYPRNRGGYPGNRGGNY---GGGYPGNRG 95
YG GGGY GR GGGG GGGY GGY G GG GGGY GNRG
Sbjct: 111 YGGGGGGYGGRREGGGGYGGGGYGGGGGGYGGREGGGGYGGGGGYGGNRG 160
Score = 47.8 bits (112), Expect = 4e-06
Identities = 23/37 (62%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYG 87
YG GGGY GR GGG YGGG GGY GNRG + G
Sbjct: 133 YGGGGGGYGGREGGGGYGGG-----GGYGGNRGDSGG 164
>DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (Nuclear DNA
helicase II) (NDH II) (DEAH-box protein 9) (mHEL-5)
Length = 1380
Score = 57.8 bits (138), Expect = 4e-09
Identities = 27/47 (57%), Positives = 28/47 (59%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
G GGG+ G GG GN GGGY GGY G GG YGGG G GG Y
Sbjct: 1252 GGGGGGFGGSGGFGNGGGGYGVGGGGYGGGGGGGYGGGSGGYGGGGY 1298
Score = 51.6 bits (122), Expect = 3e-07
Identities = 33/71 (46%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRG---------GNYGGGYPGNRGGNYCRY 101
YG GGGY G GGGG GG GGY G G GNYGGG G RGG+ Y
Sbjct: 1271 YGVGGGGYGGGGGGGYGGGSGGYGGGGYGGGEGYSISPNSYRGNYGGGGGGYRGGSQGGY 1330
Query: 102 -GCCGDRYYGS 111
G Y GS
Sbjct: 1331 RNNFGGDYRGS 1341
Score = 48.9 bits (115), Expect = 2e-06
Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPG-----NRGGNY---GGGYPGNRGGNY 98
+G GGG+ G GGGG +GGG GG+ G N GG Y GGGY G GG Y
Sbjct: 1232 FGGGGGGFSG-GGGGGFGGGRGGGGGGFGGSGGFGNGGGGYGVGGGGYGGGGGGGY 1286
Score = 47.8 bits (112), Expect = 4e-06
Identities = 25/51 (49%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYG 102
G +GGG G GGG GG+ GGY G GG YGGG G GG YG
Sbjct: 1245 GGFGGGRGGGGGGFGGSGGFGNGGGGY-GVGGGGYGGGGGGGYGGGSGGYG 1294
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/47 (46%), Positives = 28/47 (58%), Gaps = 1/47 (2%)
Query: 51 YGSYGGGYPGRGGG-GNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
+ S GGG+ GGG G+ GGG+ GG+ G GG +GGG G GG
Sbjct: 1211 FNSGGGGFGSGGGGFGSGGGGFGGGGGGFSGGGGGGFGGGRGGGGGG 1257
Score = 46.6 bits (109), Expect = 1e-05
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 52 GSYGGGYPGRGGG-GNYGGGYPRNRGGYPGNRG---GNYGGGYPGNRGGNYCRYGCCG 105
G +GGG+ GGG G+ GGG+ GG+ G G G GGG+ G RGG +G G
Sbjct: 1205 GGFGGGFNSGGGGFGSGGGGFGSGGGGFGGGGGGFSGGGGGGFGGGRGGGGGGFGGSG 1262
Score = 46.2 bits (108), Expect = 1e-05
Identities = 26/45 (57%), Positives = 28/45 (61%), Gaps = 5/45 (11%)
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRG 95
+G+ GGGY G GGGG YGGG GGY G GG GGGY G G
Sbjct: 1264 FGNGGGGY-GVGGGG-YGGG---GGGGYGGGSGGYGGGGYGGGEG 1303
Score = 44.3 bits (103), Expect = 5e-05
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 52 GSYGGGY------PGRGGGGNYGGGYPRNRGGYPGNRGGNY---GGGYPGNRGG 96
G YGGGY G G GG +GGG+ GG+ G+ GG + GGG+ G GG
Sbjct: 1186 GGYGGGYGSGGFGGGFGSGGGFGGGFNSGGGGF-GSGGGGFGSGGGGFGGGGGG 1238
Score = 42.7 bits (99), Expect = 1e-04
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 52 GSYGGGYPGRGGGGNYGGG-------------YPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
G YGGG G GGGG YGGG Y GGY G G Y + G+ G+
Sbjct: 1284 GGYGGGSGGYGGGG-YGGGEGYSISPNSYRGNYGGGGGGYRGGSQGGYRNNFGGDYRGSS 1342
Query: 99 CRYGCCGDRYYGS 111
Y G Y GS
Sbjct: 1343 GDYRGSGGGYRGS 1355
Score = 42.0 bits (97), Expect = 2e-04
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 52 GSYGGGYP---GRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYG 102
G +GGG+ G GGG N GGG + GG G+ GG +GGG G GG +G
Sbjct: 1195 GGFGGGFGSGGGFGGGFNSGGGGFGSGGGGFGSGGGGFGGGGGGFSGGGGGGFG 1248
Score = 42.0 bits (97), Expect = 2e-04
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 54 YGGGYPGRG-GGGNYGGGYPRNRGGYPG--NRGGNYGGGYPGNRGG 96
Y GY G G GGG YGGGY GG+ G GG +GGG+ GG
Sbjct: 1174 YRRGYGGGGYGGGGYGGGY--GSGGFGGGFGSGGGFGGGFNSGGGG 1217
Score = 40.4 bits (93), Expect = 7e-04
Identities = 29/66 (43%), Positives = 33/66 (49%), Gaps = 8/66 (12%)
Query: 53 SYGGGYPGRGGG--GNYGGGYPRNRGGYPGNRGGNY---GGGYPGNRGGNYCRYGCCGDR 107
SY G Y G GGG G GGY N GG G+Y GGGY G+ G + R G G
Sbjct: 1310 SYRGNYGGGGGGYRGGSQGGYRNNFGGDYRGSSGDYRGSGGGYRGS--GGFQRRG-YGGG 1366
Query: 108 YYGSCR 113
Y+G R
Sbjct: 1367 YFGQGR 1372
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/48 (47%), Positives = 29/48 (59%), Gaps = 4/48 (8%)
Query: 52 GSYGGG-YPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
G YGGG Y G G G +GGG+ + GG+ G G N GGG G+ GG +
Sbjct: 1181 GGYGGGGYGGGYGSGGFGGGF-GSGGGFGG--GFNSGGGGFGSGGGGF 1225
Score = 38.1 bits (87), Expect = 0.003
Identities = 27/67 (40%), Positives = 30/67 (44%), Gaps = 20/67 (29%)
Query: 51 YGSYGGGYPG--------------RGGGGNY---GGGYPRNRGGYP--GNRGGNYGGGYP 91
YG GGGY G RG G+Y GGGY R GG+ G GG +G G
Sbjct: 1315 YGGGGGGYRGGSQGGYRNNFGGDYRGSSGDYRGSGGGY-RGSGGFQRRGYGGGYFGQGRG 1373
Query: 92 GNRGGNY 98
G GG Y
Sbjct: 1374 GGGGGGY 1380
Score = 32.7 bits (73), Expect = 0.14
Identities = 21/54 (38%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 46 LNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGY-PGNRGGNY 98
+ +YG G P + + G GY R GG G GG YGGGY G GG +
Sbjct: 1151 IGSVRYGD--GPRPPKMARYDNGSGYRRGYGG-GGYGGGGYGGGYGSGGFGGGF 1201
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1
(hnRNP A2 / hnRNP B1)
Length = 341
Score = 56.6 bits (135), Expect = 9e-09
Identities = 33/62 (53%), Positives = 36/62 (57%), Gaps = 14/62 (22%)
Query: 51 YGS---YGGGYPGRGGG---GNYGG--GYPRNRGGYP------GNRGGNYGGGYPGNRGG 96
YGS +G GY G GGG GN+GG GY RGGY GN+GG YGGGY GG
Sbjct: 222 YGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGG 281
Query: 97 NY 98
NY
Sbjct: 282 NY 283
Score = 43.9 bits (102), Expect = 6e-05
Identities = 29/71 (40%), Positives = 32/71 (44%), Gaps = 12/71 (16%)
Query: 52 GSYGGGYPGRGG-GGNYGGGYPRNRGGYPGN-----------RGGNYGGGYPGNRGGNYC 99
G YGGG PG G GG YGGGY GG G+ + NYG GN GG+
Sbjct: 255 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGTYNDFGNYNQQPSNYGPMKSGNFGGSRN 314
Query: 100 RYGCCGDRYYG 110
G G YG
Sbjct: 315 MGGPYGGGNYG 325
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/58 (46%), Positives = 31/58 (52%), Gaps = 9/58 (15%)
Query: 53 SYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGG--GYPGNRGGNYCRYGCCGDRY 108
++ GG G G G +G GY GG PG GGN+GG GY G RGG YG G Y
Sbjct: 214 NFRGGSDGYGSGRGFGDGY-NGYGGGPG--GGNFGGSPGYGGGRGG----YGGGGPGY 264
Score = 40.8 bits (94), Expect = 5e-04
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 25/71 (35%)
Query: 51 YGSYGGGYPG---RGGGGNYGGGY---------------PRNRGGYPGNR-------GGN 85
YG+ GGGY G GGGNYG G P G + G+R GGN
Sbjct: 264 YGNQGGGYGGGYDNYGGGNYGSGTYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGN 323
Query: 86 YGGGYPGNRGG 96
YG G G GG
Sbjct: 324 YGPGGSGGSGG 334
Score = 31.6 bits (70), Expect = 0.32
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 40 DDQTNELNDAKYGSYGGG--YPGRGGGGNYGGGYPRNRGGYPG 80
+ Q + K G++GG G GGGNYG G GGY G
Sbjct: 295 NQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGG 337
Score = 27.7 bits (60), Expect = 4.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNR 75
G YGGG G GG G GG R+R
Sbjct: 317 GPYGGGNYGPGGSGGSGGYGGRSR 340
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1
(hnRNP A2 / hnRNP B1)
Length = 353
Score = 56.6 bits (135), Expect = 9e-09
Identities = 33/62 (53%), Positives = 36/62 (57%), Gaps = 14/62 (22%)
Query: 51 YGS---YGGGYPGRGGG---GNYGG--GYPRNRGGYP------GNRGGNYGGGYPGNRGG 96
YGS +G GY G GGG GN+GG GY RGGY GN+GG YGGGY GG
Sbjct: 234 YGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGG 293
Query: 97 NY 98
NY
Sbjct: 294 NY 295
Score = 43.9 bits (102), Expect = 6e-05
Identities = 27/49 (55%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 54 YGGGYPGRGGGG----NYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
YGGG G GGGG N GGGY GGY GGNYG G N GNY
Sbjct: 262 YGGGRGGYGGGGPGYGNQGGGY---GGGYDNYGGGNYGSG-NYNDFGNY 306
Score = 43.9 bits (102), Expect = 6e-05
Identities = 29/71 (40%), Positives = 32/71 (44%), Gaps = 12/71 (16%)
Query: 52 GSYGGGYPGRGG-GGNYGGGYPRNRGGYPGN-----------RGGNYGGGYPGNRGGNYC 99
G YGGG PG G GG YGGGY GG G+ + NYG GN GG+
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRN 326
Query: 100 RYGCCGDRYYG 110
G G YG
Sbjct: 327 MGGPYGGGNYG 337
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/58 (46%), Positives = 31/58 (52%), Gaps = 9/58 (15%)
Query: 53 SYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGG--GYPGNRGGNYCRYGCCGDRY 108
++ GG G G G +G GY GG PG GGN+GG GY G RGG YG G Y
Sbjct: 226 NFRGGSDGYGSGRGFGDGY-NGYGGGPG--GGNFGGSPGYGGGRGG----YGGGGPGY 276
Score = 40.8 bits (94), Expect = 5e-04
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 25/71 (35%)
Query: 51 YGSYGGGYPG---RGGGGNYGGGY---------------PRNRGGYPGNR-------GGN 85
YG+ GGGY G GGGNYG G P G + G+R GGN
Sbjct: 276 YGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGN 335
Query: 86 YGGGYPGNRGG 96
YG G G GG
Sbjct: 336 YGPGGSGGSGG 346
Score = 31.6 bits (70), Expect = 0.32
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 40 DDQTNELNDAKYGSYGGG--YPGRGGGGNYGGGYPRNRGGYPG 80
+ Q + K G++GG G GGGNYG G GGY G
Sbjct: 307 NQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGG 349
Score = 27.7 bits (60), Expect = 4.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNR 75
G YGGG G GG G GG R+R
Sbjct: 329 GPYGGGNYGPGGSGGSGGYGGRSR 352
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A
Length = 169
Score = 56.6 bits (135), Expect = 9e-09
Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 22 EVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGGGGNY--GGGYPRNRGGYP 79
E S +D E + ++ D ++ +N+A+ G G GRGGGG Y GGGY GGY
Sbjct: 59 EKSMKDAIEGMNG--QDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYG 116
Query: 80 GNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGSCRK 114
G R GGGY G GG Y G G Y G R+
Sbjct: 117 GGR--REGGGYSGG-GGGYSSRGGGGGGYGGGGRR 148
Score = 54.7 bits (130), Expect = 3e-08
Identities = 26/43 (60%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 51 YGSYGGGYPGRGGGG-NYGGGYPRNRGGYPGNRGGNYGGGYPG 92
Y GGGY RGGGG YGGG R+ GGY G GG YGGG G
Sbjct: 125 YSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGYGGGGGG 167
Score = 51.6 bits (122), Expect = 3e-07
Identities = 28/56 (50%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYP--GNRGGNY-------GGGYPGNRGGNY 98
G YGGG G GGG GGGY GGY G GG Y GGGY G GG Y
Sbjct: 106 GGYGGGGGGYGGGRREGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGY 161
>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2
Length = 880
Score = 55.1 bits (131), Expect = 3e-08
Identities = 30/53 (56%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNR--------GGYPGNRG-GNYGGGYPGNRG 95
G GGGY G G G GGGY NR GGY GNRG G GGGY GNRG
Sbjct: 169 GQGGGGYQGNRGPGQGGGGYQGNRGPGPGQGGGGYQGNRGPGQGGGGYQGNRG 221
Score = 54.7 bits (130), Expect = 3e-08
Identities = 32/62 (51%), Positives = 33/62 (52%), Gaps = 9/62 (14%)
Query: 55 GGGYPGRGGGGNYGGGYPRNR------GGYPGNRG---GNYGGGYPGNRGGNYCRYGCCG 105
GGGY G G G GGGY NR GGY GNRG G GGGY GNRG G G
Sbjct: 159 GGGYQGNRGPGQGGGGYQGNRGPGQGGGGYQGNRGPGPGQGGGGYQGNRGPGQGGGGYQG 218
Query: 106 DR 107
+R
Sbjct: 219 NR 220
Score = 42.7 bits (99), Expect = 1e-04
Identities = 23/37 (62%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 66 NYGGGYPRNR------GGYPGNRG-GNYGGGYPGNRG 95
N GGGY NR GGY GNRG G GGGY GNRG
Sbjct: 157 NSGGGYQGNRGPGQGGGGYQGNRGPGQGGGGYQGNRG 193
Score = 39.3 bits (90), Expect = 0.002
Identities = 24/54 (44%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Query: 68 GGGYPRNRGGYPGNRG-GNYGGGYPGNRGGNYCRYGCCGDRYYGSCRKCCSYAG 120
G P + GGY GNRG G GGGY GNRG G G+R G + Y G
Sbjct: 152 GPSRPNSGGGYQGNRGPGQGGGGYQGNRGPGQGGGGYQGNRGPGPGQGGGGYQG 205
Score = 36.6 bits (83), Expect = 0.010
Identities = 17/32 (53%), Positives = 17/32 (53%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRG 83
G GGGY G G G GGGY NRG G G
Sbjct: 197 GQGGGGYQGNRGPGQGGGGYQGNRGPRSGGTG 228
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A
Length = 166
Score = 55.1 bits (131), Expect = 3e-08
Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 22 EVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGGGGNY----GGGYPRNRGG 77
E S +D E + ++ D ++ +N+A+ GGG GRGGGG Y GGGY GG
Sbjct: 59 EKSMKDAIEGMNG--QDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGG 116
Query: 78 Y-PGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGSCRK 114
Y G R G Y GG GG Y G G Y G R+
Sbjct: 117 YGGGGREGGYSGG-----GGGYSSRGGGGGGYGGGGRR 149
Score = 46.6 bits (109), Expect = 1e-05
Identities = 27/51 (52%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYP--GNRGGNYGGG--YPGNRGGNY 98
G YGGG G GGGG GGY GGY G GG YGGG G GG Y
Sbjct: 108 GGYGGGGGGYGGGGR-EGGYSGGGGGYSSRGGGGGGYGGGGRRDGGEGGGY 157
Score = 44.7 bits (104), Expect = 4e-05
Identities = 24/47 (51%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 51 YGSYGGGYPGR-GGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
Y GGGY R GGGG YGGG G R G GGGY G+ GG
Sbjct: 126 YSGGGGGYSSRGGGGGGYGGG---------GRRDGGEGGGYGGSGGG 163
Score = 26.9 bits (58), Expect = 7.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 52 GSYGGGYPGRGGGGNY 67
G GGGY G GGGG +
Sbjct: 151 GGEGGGYGGSGGGGGW 166
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP
A3)
Length = 379
Score = 54.7 bits (130), Expect = 3e-08
Identities = 30/52 (57%), Positives = 32/52 (60%), Gaps = 5/52 (9%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPG-NRGGNYGGGYPGNRGGNYCRYG 102
G YGGG PG G N GGGY GGY G N GGN+GGG G GGNY +G
Sbjct: 287 GGYGGGGPGYG---NQGGGYGGGGGGYDGYNEGGNFGGGNYGG-GGNYNDFG 334
Score = 49.3 bits (116), Expect = 1e-06
Identities = 37/69 (53%), Positives = 38/69 (54%), Gaps = 11/69 (15%)
Query: 52 GSYGGG---YPGRGG-GGNYGGGYP-RNRGGYPGNRGG--NYGGGYPGNRGGNYCRY--- 101
GSYGGG Y G GG GGNYGGG +RGGY G G N GGGY G GG Y Y
Sbjct: 258 GSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGY-GGGGGGYDGYNEG 316
Query: 102 GCCGDRYYG 110
G G YG
Sbjct: 317 GNFGGGNYG 325
Score = 46.2 bits (108), Expect = 1e-05
Identities = 33/73 (45%), Positives = 36/73 (49%), Gaps = 26/73 (35%)
Query: 52 GSYGGG--------------YPGRGG-GGNYGGGYP-RNRGGYP------GNRGGNYGGG 89
G YGGG Y G GG GGNYGGG +RGGY GN+GG YGGG
Sbjct: 247 GGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGG 306
Query: 90 YPG----NRGGNY 98
G N GGN+
Sbjct: 307 GGGYDGYNEGGNF 319
Score = 45.8 bits (107), Expect = 2e-05
Identities = 30/65 (46%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYG--GGYPGNRGGNY--CRYGCCGD 106
YG GGGY G GGN+GGG N GG GGNY G Y G + NY + G G
Sbjct: 303 YGGGGGGYDGYNEGGNFGGG---NYGG-----GGNYNDFGNYSGQQQSNYGPMKGGSFGG 354
Query: 107 RYYGS 111
R GS
Sbjct: 355 RSSGS 359
Score = 44.3 bits (103), Expect = 5e-05
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
YG+ GGGY G GGG Y G N GG G GGNYGGG N GNY
Sbjct: 296 YGNQGGGYGG--GGGGYDG---YNEGGNFG--GGNYGGGGNYNDFGNY 336
Score = 43.5 bits (101), Expect = 8e-05
Identities = 27/59 (45%), Positives = 32/59 (53%), Gaps = 7/59 (11%)
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYG 110
G++GGG G GGN+GG RGGY G GG+ G Y G GG Y +G G Y G
Sbjct: 228 GNFGGGGGNFGRGGNFGG-----RGGYGGGGGGS-RGSYGGGDGG-YNGFGGDGGNYGG 279
Score = 42.7 bits (99), Expect = 1e-04
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 47 NDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYP--GNRGGNYGGG----YPGNRGGNYCR 100
N + G++GG GGGG G Y GGY G GGNYGGG G GG
Sbjct: 236 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPG 295
Query: 101 YGCCGDRYYG 110
YG G Y G
Sbjct: 296 YGNQGGGYGG 305
Score = 41.2 bits (95), Expect = 4e-04
Identities = 30/77 (38%), Positives = 37/77 (47%), Gaps = 8/77 (10%)
Query: 36 QKEADDQTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGG--GYPGN 93
+K Q + ++ G GG G GGN+GGG GG G RGGN+GG GY G
Sbjct: 199 KKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGG-----GGNFG-RGGNFGGRGGYGGG 252
Query: 94 RGGNYCRYGCCGDRYYG 110
GG+ YG Y G
Sbjct: 253 GGGSRGSYGGGDGGYNG 269
Score = 32.7 bits (73), Expect = 0.14
Identities = 22/46 (47%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
Query: 70 GYPRNRGGYPGN---RGGNYGGGYPG-NRGGNYCRYGCCGDRYYGS 111
G R RGG GN RGGN+GGG RGGN+ G G GS
Sbjct: 211 GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGS 256
Score = 28.1 bits (61), Expect = 3.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 42 QTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNR 82
Q + K GS+GG G GG YG G GGY R
Sbjct: 340 QQSNYGPMKGGSFGGRSSGSPYGGGYGSG--GGSGGYGSRR 378
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,636,478
Number of Sequences: 164201
Number of extensions: 1246497
Number of successful extensions: 23633
Number of sequences better than 10.0: 1073
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 415
Number of HSP's that attempted gapping in prelim test: 4175
Number of HSP's gapped (non-prelim): 9342
length of query: 133
length of database: 59,974,054
effective HSP length: 109
effective length of query: 24
effective length of database: 42,076,145
effective search space: 1009827480
effective search space used: 1009827480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC138451.12