BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138133.7 + phase: 0 /pseudo
         (1245 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VIRN_NICGU (Q40392) TMV resistance protein N                          149  5e-35
WR16_ARATH (Q9FL92) Probable WRKY transcription factor 16 (WRKY ...    49  1e-04
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li...    45  0.002
VDP_HUMAN (O60763) General vesicular transport factor p115 (Tran...    42  0.014
DESP_HUMAN (P15924) Desmoplakin (DP) (250/210 kDa paraneoplastic...    42  0.014
MYS3_HUMAN (Q92794) MYST histone acetyltransferase 3 (Runt-relat...    40  0.030
MFT1_YEAST (P33441) Mitochondrial fusion target protein                40  0.030
YC86_STAAM (P67277) Hypothetical UPF0144 protein SAV1286               39  0.067
YB69_STAAW (P67279) Hypothetical UPF0144 protein MW1169                39  0.067
YB29_STAAN (P67278) Hypothetical UPF0144 protein SA1129                39  0.067
GOA4_HUMAN (Q13439) Golgi autoantigen, golgin subfamily A member...    39  0.067
RPB1_ENTFC (Q8GCR6) DNA-directed RNA polymerase beta chain (EC 2...    39  0.088
ITN2_HUMAN (Q9NZM3) Intersectin 2 (SH3 domain-containing protein...    39  0.088
VDP_BOVIN (P41541) General vesicular transport factor p115 (Tran...    38  0.15
Y964_STAEP (Q8CSS7) Hypothetical UPF0144 protein SE0964                37  0.26
TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit           37  0.26
P200_MYCGE (Q49429) Protein P200                                       37  0.26
NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof...    37  0.26
NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neur...    37  0.26
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor               37  0.33

>VIRN_NICGU (Q40392) TMV resistance protein N
          Length = 1144

 Score =  149 bits (376), Expect = 5e-35
 Identities = 83/186 (44%), Positives = 117/186 (62%), Gaps = 8/186 (4%)

Query: 8   SSSSFSYAFTYQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEITPALLK 67
           +SSS S  ++Y VFLSFRG DTR  FT +LY+ L DKGI TF D+  L  G  I   L K
Sbjct: 2   ASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCK 61

Query: 68  AIDESRIFIPVFSIKYASSSFCLDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYG 127
           AI+ES+  I VFS  YA+S +CL+ELV I+ C T   + V+P+F+ V+PSHVR+ K S+ 
Sbjct: 62  AIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFA 121

Query: 128 QALAEHKKRFQNDEDNIKRLQRWKVALSQAANFSGYHDSPPGE-----RNLQQDQSSALT 182
           +A  EH+ ++   +D+++ +QRW++AL++AAN  G  D+         R +    SS L 
Sbjct: 122 KAFEEHETKY---KDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLC 178

Query: 183 CCQLSY 188
              LSY
Sbjct: 179 KISLSY 184


>WR16_ARATH (Q9FL92) Probable WRKY transcription factor 16 (WRKY
           DNA-binding protein 16)
          Length = 1372

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)

Query: 28  DTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEITPALLKAIDESRIFIPVFSIKYASSS 87
           + RY F  +L KAL  KG++    ++D    D ++      ++ +R+ + +      + +
Sbjct: 15  EVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILP---GNRT 67

Query: 88  FCLDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKG--SYGQALAEHKKRFQNDEDNIK 145
             LD+LV ++ C   K +VV+PV +GV  S         S G +   H ++  +D   +K
Sbjct: 68  VSLDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFSSVHHSRKECSDSQLVK 127

Query: 146 RLQR 149
              R
Sbjct: 128 ETVR 131


>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-linked
            nuclear protein-1)
          Length = 1359

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 66/314 (21%), Positives = 131/314 (41%), Gaps = 26/314 (8%)

Query: 898  KKNELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEETDTEEEIDTEEDDFSDDEI 957
            KK +    E   +K     SEDE     R Q     S  +   T+++  +E  + S++E 
Sbjct: 108  KKVDQKKKEKSKKKRTTSSSEDEDSDEEREQK----SKKKSKKTKKQTSSESSEESEEER 163

Query: 958  FTESSSQMVIHYQEKSNTEQIDTEE--DDFYRSAQMGIHVVKEKSNIKDHDLSEDEIFVP 1015
              + S +     +EKS  ++ +T E  D+  + ++     +K+K+  +    SEDE  V 
Sbjct: 164  KVKKSKKN----KEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVK 219

Query: 1016 DEIKKLSSAQIGIHEKSNTEDVI----FTNPNRTTTTTKPYYSQALFPNPPRKIRKFRPT 1071
               KK       + ++S +ED       T   + + T+    S++   +   + ++  P 
Sbjct: 220  KSKKKSKKV---VKKESESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPK 276

Query: 1072 LKKQRFVEVSKTESLQRRS------LEETKSDGVKSLEVSETESLQQQYLAVVSGMRNLV 1125
             KK++ + V K  S +         L + K  G  +L     +   Q+  +  S +   V
Sbjct: 277  PKKKKPLAVKKLSSDEESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSESEASDVEEKV 336

Query: 1126 LTETKEKHRFVEVGVSETE---TAHRWSLEETKSDGVKRFEVSETESLQQQDLALLSSGM 1182
              +  +K    E G   +E   T +R S ++ K +  K+  + ++  LQ++ +    +  
Sbjct: 337  SKKKAKKQESSESGSDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSKLQKETIDAERAEK 396

Query: 1183 QNMVLTDKKEKENN 1196
            +     +KK+KE N
Sbjct: 397  ERRKRLEKKQKEFN 410



 Score = 35.0 bits (79), Expect = 1.3
 Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 27/230 (11%)

Query: 947  TEEDDFSDDEIFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEKSNIKDHD 1006
            +EEDD  ++E   +SS +     + +S +++ D EED     ++  +   K++ + K   
Sbjct: 64   SEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRT 123

Query: 1007 LSEDEIFVPDEIKKLSSAQIGIHEKSNTEDVIFTNPNRTTTTTKPYYSQALFPNPPRKIR 1066
             S  E    DE ++  S +     K  T                     +      RK++
Sbjct: 124  TSSSEDEDSDEEREQKSKKKSKKTKKQTSS-----------------ESSEESEEERKVK 166

Query: 1067 KFRPTLKK--QRFVEVSKTESLQRRSLEETKSDGVKSLEVSETESLQQQYLAVVSGMRNL 1124
            K +   +K  ++  E S+      +  +++K  G+K    SE+ES  +    V    +  
Sbjct: 167  KSKKNKEKSVKKRAETSEESDEDEKPSKKSKK-GLKKKAKSESESESEDEKEVKKSKKKS 225

Query: 1125 VLTETKEKHRFVEVGVSETETAHRWSLEETKSDGVKRFEVSETESLQQQD 1174
                 KE         SE E   +   E+ K       E SE+E   +++
Sbjct: 226  KKVVKKESE-------SEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEE 268


>VDP_HUMAN (O60763) General vesicular transport factor p115
            (Transcytosis associated protein) (TAP) (Vesicle docking
            protein)
          Length = 962

 Score = 41.6 bits (96), Expect = 0.014
 Identities = 73/332 (21%), Positives = 144/332 (42%), Gaps = 29/332 (8%)

Query: 884  YDNFNHMPEMIRTIKKNELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEETDTEE 943
            Y  F+H  E  + +K+ E    +  ++  +    E+E+KK       I V+  +    E+
Sbjct: 606  YMIFDH--EFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHDNI-VTHYKNMIREQ 662

Query: 944  EIDTEEDDFSDDEIFTESSSQMVIHYQEKSNTEQIDTEEDDF-YRSAQMGI---HVVKEK 999
            ++  EE      ++ T       +         QI   +D +     Q+G    H     
Sbjct: 663  DLQLEE---LRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLGKDNQHQGSYS 719

Query: 1000 SNIKDHDLSEDEIF-VPDEIKKLSSAQIGIHEKSNTEDVIFTNPNRTTTTTKPYYSQALF 1058
               + + +  +EI  + +EI++L   Q  +  +   +D +  N   + T+     S A+ 
Sbjct: 720  EGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTSGTNEQSSAIV 779

Query: 1059 P----NPPRKIRKFRPTLKKQ---RFVEVSKTESLQRRSLEETKSDGVKSLEVS-ETESL 1110
                     ++++   TLK Q   + VE++K ++ ++  L++T++   KS+EV  ETE++
Sbjct: 780  SARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFA-KSVEVQGETETI 838

Query: 1111 QQQYLAVVSGMRNLVLTETKEKHRFVEVGVSETETAHRWSLEETKS------DGVKRFEV 1164
                   V G  + +L ETKE    ++  +SE  TA +  L+ + S          + E+
Sbjct: 839  IATKTTDVEGRLSALLQETKELKNEIK-ALSEERTAIKEQLDSSNSTIAILQTEKDKLEL 897

Query: 1165 SETESLQQQD--LALLSSGMQNMVLTDKKEKE 1194
              T+S ++QD  L LL+   Q ++    K K+
Sbjct: 898  EITDSKKEQDDLLVLLADQDQKILSLKNKLKD 929


>DESP_HUMAN (P15924) Desmoplakin (DP) (250/210 kDa paraneoplastic
            pemphigus antigen)
          Length = 2871

 Score = 41.6 bits (96), Expect = 0.014
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 61/315 (19%)

Query: 898  KKNELNHVE--IDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEETDTEEEIDTEEDDFSDD 955
            K  E+  ++  ID E +D    EDE  +L+R+Q  +  + +  T+T  ++  +E + +  
Sbjct: 1479 KNKEIERLKQLIDKETNDRKCLEDENARLQRVQYDLQKANSSATETINKLKVQEQELTRL 1538

Query: 956  EIFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEKSNIKDHDLSEDEIFVP 1015
             I  E  S      QE++  +Q  T   +  +  Q+    V+E+ N      SED     
Sbjct: 1539 RIDYERVS------QERTVKDQDITRFQNSLKELQLQKQKVEEELNRLKRTASEDSC--- 1589

Query: 1016 DEIKKLSSAQIGIHEKSNTEDVIFTNPNRTTTTTKPYYSQALFPNPPRKIRKFRPTL--- 1072
             + KKL     G+      + +  TN      T +   +  +       +R+ R  L   
Sbjct: 1590 -KRKKLEEELEGMRRSLKEQAIKITN-----LTQQLEQASIVKKRSEDDLRQQRDVLDGH 1643

Query: 1073 --KKQRFVE-----VSKTESLQRRSLEETKS----------------DGVKSLEVSE--- 1106
              +KQR  E      S+ E+L+R+ L+E +S                D  +SL  S+   
Sbjct: 1644 LREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLRNEHFQKAIEDKSRSLNESKIEI 1703

Query: 1107 ------TESLQQQYLAVVSGMRNLVLTETKEKHRFVEVGVSETETAHRWSLEETKSDGVK 1160
                  TE+L +++L +   +RNL L     ++  +  G SE ++    ++ E +S    
Sbjct: 1704 ERLQSLTENLTKEHLMLEEELRNLRL-----EYDDLRRGRSEADSDKNATILELRS---- 1754

Query: 1161 RFEVSETESLQQQDL 1175
            + ++S   +L+ Q L
Sbjct: 1755 QLQISNNRTLELQGL 1769


>MYS3_HUMAN (Q92794) MYST histone acetyltransferase 3 (Runt-related
            transcription factor binding protein 2) (Monocytic
            leukemia zinc finger protein) (Zinc finger protein 220)
          Length = 2004

 Score = 40.4 bits (93), Expect = 0.030
 Identities = 72/285 (25%), Positives = 113/285 (39%), Gaps = 31/285 (10%)

Query: 936  TEETDTEEEIDTEEDDFSDDEIFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHV 995
            T E D EEE + +E++    E F   SSQ V+  Q  S  +  D EED+    A     +
Sbjct: 1064 TFEIDEEEE-EEDENELFPREYFRRLSSQDVLRCQSSSKRKSKDEEEDEESDDAD-DTPI 1121

Query: 996  VKEKSNIKDHDLSEDEIFVPDEIKKLSSAQIGIHEKSNTEDVIFTNPNR-----TTTTTK 1050
            +K  S ++  D+    +  PD    L   +     KS         P R      +    
Sbjct: 1122 LKPVSLLRKRDVKNSPL-EPDTSTPLKKKKGWPKGKSRKPIHWKKRPGRKPGFKLSREIM 1180

Query: 1051 PYYSQALFPNPPRKIRKFRPTLKKQRFVE-VSKTESL----QRRSLEETKSDGVKSLEVS 1105
            P  +QA    P   I K     K Q   E V   E +    +R+  EE +++  ++ E  
Sbjct: 1181 PVSTQACVIEPIVSIPKAGRKPKIQESEETVEPKEDMPLPEERKEEEEMQAEAEEAEEGE 1240

Query: 1106 ETESLQQQY-LAVVSGMRNLVLTETKEKHRFVEVGVSETETAHRWSLEETKSDGVKRFEV 1164
            E ++   +   A  +   N   TETKE        V E E   R S E+ +S+  ++ E+
Sbjct: 1241 EEDAASSEVPAASPADSSNSPETETKEPE------VEEEEEKPRVSEEQRQSEEEQQ-EL 1293

Query: 1165 SETESLQQQDLALLSSGMQ----------NMVLTDKKEKENNMTR 1199
             E E  +++D A  ++             ++  T KKE E   TR
Sbjct: 1294 EEPEPEEEEDAAAETAQNDDHDADDEDDGHLESTKKKELEEQPTR 1338


>MFT1_YEAST (P33441) Mitochondrial fusion target protein
          Length = 392

 Score = 40.4 bits (93), Expect = 0.030
 Identities = 38/142 (26%), Positives = 59/142 (40%), Gaps = 8/142 (5%)

Query: 902  LNHVEIDWEKDDLHLSEDEIKKLR--RLQMGIHVSWTEETDTEEEIDTEEDDFSDDEIFT 959
            LN  E D   +D    EDE +K R  R +  + V+  E  D +EE D E DD  D+E   
Sbjct: 252  LNEAEGDNIDEDYESDEDEERKERFKRQRSMVEVNTIENVDEKEESDHEYDDQEDEE--N 309

Query: 960  ESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIH--VVKEKSNIKDHDLSED--EIFVP 1015
            E    M +  ++     ++D E      +++ G +    KE   I++ D   D  E    
Sbjct: 310  EEEDDMEVDVEDIKEDNEVDGESSQQEDNSRQGNNEETDKETGVIEEPDAVNDAEEADSD 369

Query: 1016 DEIKKLSSAQIGIHEKSNTEDV 1037
               +KL          S+ E+V
Sbjct: 370  HSSRKLGGTTSDFSASSSVEEV 391


>YC86_STAAM (P67277) Hypothetical UPF0144 protein SAV1286
          Length = 519

 Score = 39.3 bits (90), Expect = 0.067
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 1054 SQALFPNPPRKIRKFRPTLKKQRFVEVSKTESLQRRSLEETKSDGVKSLEVSETESLQQQ 1113
            +Q L      ++R+ R  L++Q    + K E+L+R+S    K D +   + S+ E  QQQ
Sbjct: 65   NQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEEKQQQ 124

Query: 1114 YLAVVSGMRNLVLTETKEKHRFVEVGVSETETAHRWSLEETKSDG----VKRFEVSETES 1169
              A  S ++ L++   +E  R   +   E        +EE  S      VK  E    E 
Sbjct: 125  VDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKEAKEK 184

Query: 1170 LQQQDLALLSSGMQNMVLTDKKE 1192
            + +    LL++ +Q +      E
Sbjct: 185  VDKTAKELLATAVQRLAADHTSE 207


>YB69_STAAW (P67279) Hypothetical UPF0144 protein MW1169
          Length = 519

 Score = 39.3 bits (90), Expect = 0.067
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 1054 SQALFPNPPRKIRKFRPTLKKQRFVEVSKTESLQRRSLEETKSDGVKSLEVSETESLQQQ 1113
            +Q L      ++R+ R  L++Q    + K E+L+R+S    K D +   + S+ E  QQQ
Sbjct: 65   NQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEEKQQQ 124

Query: 1114 YLAVVSGMRNLVLTETKEKHRFVEVGVSETETAHRWSLEETKSDG----VKRFEVSETES 1169
              A  S ++ L++   +E  R   +   E        +EE  S      VK  E    E 
Sbjct: 125  VDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKEAKEK 184

Query: 1170 LQQQDLALLSSGMQNMVLTDKKE 1192
            + +    LL++ +Q +      E
Sbjct: 185  VDKTAKELLATAVQRLAADHTSE 207


>YB29_STAAN (P67278) Hypothetical UPF0144 protein SA1129
          Length = 519

 Score = 39.3 bits (90), Expect = 0.067
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 1054 SQALFPNPPRKIRKFRPTLKKQRFVEVSKTESLQRRSLEETKSDGVKSLEVSETESLQQQ 1113
            +Q L      ++R+ R  L++Q    + K E+L+R+S    K D +   + S+ E  QQQ
Sbjct: 65   NQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEEKQQQ 124

Query: 1114 YLAVVSGMRNLVLTETKEKHRFVEVGVSETETAHRWSLEETKSDG----VKRFEVSETES 1169
              A  S ++ L++   +E  R   +   E        +EE  S      VK  E    E 
Sbjct: 125  VDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKEAKEK 184

Query: 1170 LQQQDLALLSSGMQNMVLTDKKE 1192
            + +    LL++ +Q +      E
Sbjct: 185  VDKTAKELLATAVQRLAADHTSE 207


>GOA4_HUMAN (Q13439) Golgi autoantigen, golgin subfamily A member 4
            (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1
            protein)
          Length = 2230

 Score = 39.3 bits (90), Expect = 0.067
 Identities = 70/350 (20%), Positives = 141/350 (40%), Gaps = 62/350 (17%)

Query: 890  MPEMIRTIKKN----------ELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEET 939
            M E I+TI+K           EL+ V+ +        SE++I KL++L         +E 
Sbjct: 437  MDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHEKELAR--KEQ 494

Query: 940  DTEEEIDTEEDDFSDDE--IFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVK 997
            +  +++ T E +F +       +S S+ +   QEK   E +  EE +  + A     ++ 
Sbjct: 495  ELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKA-----ILT 549

Query: 998  EKSNIKDHDLSEDEIFVPDEIKKLSSA-------------QIGIH-----EKSNTEDVIF 1039
            E  N K  DL ++       I +L S+              + +H      K N E  + 
Sbjct: 550  ESEN-KLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVM 608

Query: 1040 TNPNRTTTTTKPYYSQALFPNPPRKIR--------KFRPTLKKQRFVEVSKTESLQRRSL 1091
               ++T   +  +   AL+    + ++        K R   ++++   +   E + +  +
Sbjct: 609  VEKHKTELESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHI 668

Query: 1092 EETKSDGVKSLEVSET--ESLQQQYLAVVSGMRNL------VLTETKEKHRFVEVGVSET 1143
            EE     ++ L+V +T  ESL  +   V+     L      +  +T +  + +E  + E 
Sbjct: 669  EEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQ 728

Query: 1144 ETAHRWSLEETKSDGVKRFEVSETESLQQQDLALLSSGMQNMVLTDKKEK 1193
            +  H+  ++      +K  EV    S+Q+ + AL     Q  +L  +++K
Sbjct: 729  KNHHQQQVDSI----IKEHEV----SIQRTEKALKDQINQLELLLKERDK 770


>RPB1_ENTFC (Q8GCR6) DNA-directed RNA polymerase beta chain (EC
            2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
            (RNA polymerase beta subunit)
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.088
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 921  IKKLRRLQMGIHVSWTEETDTE-EEIDTEEDDFSDDEIFTESSSQMVIHYQEKSNTEQID 979
            +K+L+ L + + V   EET+ E  ++D E+DD    +  T+ + Q      EK   EQ++
Sbjct: 1131 VKELQSLGLDMRVLDIEETEIELRDMDDEDDDLITVDALTKFAEQQTAKELEKKAAEQVE 1190

Query: 980  TEEDD 984
             E+DD
Sbjct: 1191 DEKDD 1195


>ITN2_HUMAN (Q9NZM3) Intersectin 2 (SH3 domain-containing protein 1B)
            (SH3P18) (SH3P18-like WASP associated protein)
          Length = 1696

 Score = 38.9 bits (89), Expect = 0.088
 Identities = 65/324 (20%), Positives = 129/324 (39%), Gaps = 40/324 (12%)

Query: 908  DWEKDDLHLSEDEIKKLRRLQMGIHVSWTEETDTEEE--IDTEEDDFSDDEIFTESSSQM 965
            +WE+    L E E KK   L+  +      E   EEE   D E  + +  E+  +   + 
Sbjct: 402  EWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEW 461

Query: 966  V-IHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEKSNIKDHDLSEDEIFVPDEIKKLSSA 1024
              I  QE  N +  + EE     S +  +H+  E  N K   +S     + D   K  + 
Sbjct: 462  ERIRRQELLNQKNREQEEIVRLNSKKKNLHLELEALNGKHQQISGR---LQDVRLKKQTQ 518

Query: 1025 QIGIHEKSNTEDVIFTNPNRTTTTTKPYYSQALFPNPPRKIRKFRPTLKKQRF------- 1077
            +  +       D+      +     + Y ++ ++  P +++   R  +K  +F       
Sbjct: 519  KTELEVLDKQCDLEIMEIKQLQQELQEYQNKLIYLVPEKQLLNER--IKNMQFSNTPDSG 576

Query: 1078 VEVSKTESLQRRSLEETKSDGVKSLE------VSETESLQQQ-------------YLAVV 1118
            V +   +SL++  L +   + + +LE      +SE +S   Q              L+++
Sbjct: 577  VSLLHKKSLEKEELCQRLKEQLDALEKETASKLSEMDSFNNQLKCGNMDDSVLQCLLSLL 636

Query: 1119 SGMRN--LVLTETKEKHRFVEVGVSETETAHRWSLEETKSDGVKRFEVSETESLQQQDLA 1176
            S + N  L+L E +E +   ++ + +     R  L+E +    KR E+ + + L+ +   
Sbjct: 637  SCLNNLFLLLKELRETYNTQQLALEQLYKIKRDKLKEIER---KRLELMQKKKLEDEAAR 693

Query: 1177 LLSSGMQNMVLTD-KKEKENNMTR 1199
                G +N+   + +KE+E    R
Sbjct: 694  KAKQGKENLWKENLRKEEEEKQKR 717


>VDP_BOVIN (P41541) General vesicular transport factor p115
            (Transcytosis associated protein) (TAP) (Vesicle docking
            protein)
          Length = 961

 Score = 38.1 bits (87), Expect = 0.15
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 1071 TLKKQ---RFVEVSKTESLQRRSLEETKSDGVKSLEVSETESLQQQYLAVVSGMRNLVLT 1127
            TLK Q   + VE++K ++ ++  L++T++    +    E+E++       V G  + +L 
Sbjct: 795  TLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSAPVPGESETVIATKTTDVEGRLSALLQ 854

Query: 1128 ETKEKHRFVEVGVSETETAHRWSLEETKS------DGVKRFEVSETESLQQQD--LALLS 1179
            ETKE    ++  +SE  TA +  L+ + S      +   + EV  T+S ++QD  L LL+
Sbjct: 855  ETKELKNEIK-ALSEERTAIKEQLDSSNSTIAILQNEKNKLEVDITDSKKEQDDLLVLLA 913

Query: 1180 SGMQNMVLTDKKEKE 1194
               Q +     K KE
Sbjct: 914  DQDQKIFSLKNKLKE 928


>Y964_STAEP (Q8CSS7) Hypothetical UPF0144 protein SE0964
          Length = 519

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 1054 SQALFPNPPRKIRKFRPTLKKQRFVEVSKTESLQRRSLEETKSDGVKSLEVSETESLQQQ 1113
            +Q L      ++R+ R  L++Q    + K E+L R+S    K D +   + S+ E  QQQ
Sbjct: 65   NQILKEQAENELRERRGELQRQETRLLQKEENLDRKSDLLDKKDEILEQKESKLEERQQQ 124

Query: 1114 YLAVVSGMRNLVLTETKEKHRFVEVGVSETETAHRWSLEETKSDG----VKRFEVSETES 1169
              A  S ++ L++   +E  R   +   E        +EE  S      VK  E    E 
Sbjct: 125  VDAKESSVQTLIMKHEQELERISGLTQEEAVKEQLQRVEEELSQDIAILVKEKEKEAKEK 184

Query: 1170 LQQQDLALLSSGMQNM 1185
            + +    LL++ +Q +
Sbjct: 185  VDKTAKELLATTVQRL 200


>TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit
          Length = 603

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 27/120 (22%), Positives = 58/120 (47%), Gaps = 5/120 (4%)

Query: 892  EMIRTIKKNELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSW-TEETDTEEEIDTEED 950
            EM+  +    L  V ++ + D L  + DEIK     ++G+ +   T+  + + +++   D
Sbjct: 216  EMLTEVSNLTLERVRLEIDVDHLRATADEIKSKYEFELGVRMQLETDIANMKRDLEAAND 275

Query: 951  DFSD-DEIFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEKSNIKDHDLSE 1009
               D D  F   + ++   +Q K+  E+++T +  F R   +   V+ E  N+K  +L++
Sbjct: 276  MRVDLDSKFNFLTEELT--FQRKTQMEELNTLKQQFGRLGPVQTSVI-ELDNVKSVNLTD 332


>P200_MYCGE (Q49429) Protein P200
          Length = 1616

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 36/136 (26%), Positives = 67/136 (48%), Gaps = 22/136 (16%)

Query: 885  DNFNHMPEMIRTIKKN-ELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEETDTEE 943
            D+ N + + + T   + ELNH EI  E  +L +SE E+++    Q+        ETD+E 
Sbjct: 675  DSVNDVDKSLETKTTSVELNHEEIGNEFINLDVSEKEVQEQPTTQL--------ETDSEF 726

Query: 944  EIDT---EEDDFSDD-EIFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEK 999
             + T    ED F++  E   E SS+     +  S T++++T E +        +  V+++
Sbjct: 727  VLPTYQIVEDSFTESAETPNEFSSEQKDTLEFISQTQEVETSESN--------VPTVEQE 778

Query: 1000 SNIKDHDLSEDEIFVP 1015
            + + +H   E+ +F P
Sbjct: 779  TKLFEHQ-DENNLFTP 793


>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa
            neurofilament protein) (Neurofilament medium polypeptide)
            (NF-M)
          Length = 845

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 66/362 (18%), Positives = 142/362 (38%), Gaps = 49/362 (13%)

Query: 867  LPSKHTFLFDLGLKSRIYDNFNHMPEMIRTIKKNELNHVEIDWEKDDLHLSEDEIKKLRR 926
            L  +H F+ ++  ++++ D  + M + + T+   EL       EK++    E+E +  + 
Sbjct: 445  LKVQHKFVEEIIEETKVEDEKSEMEDAL-TVIAEELA-ASAKEEKEEAEEKEEEPEVEKS 502

Query: 927  LQMGIHVSWTEETDTEEEIDTEEDDFSDDEIFTESSSQMVIHYQEKSNTEQIDTEEDDFY 986
                      EE + EEE + +E++  +DE     S Q      EK  + + D  E +  
Sbjct: 503  PVKSPEAKEEEEGEKEEEEEGQEEEEEEDE--GVKSDQAEEGGSEKEGSSEKDEGEQE-- 558

Query: 987  RSAQMGIHVVKEKSNIKDHDLSEDEIFVPDEIKKLSSAQIGIHEKSNTEDVIFTNPNRTT 1046
                       E+   +     E+      E K+    +  + E +  E++    P +  
Sbjct: 559  -----------EEGETEAEGEGEEA-----EAKEEKKTEGKVEEMAIKEEIKVEKPEKAK 602

Query: 1047 TTTKPYYSQALFPNPPRKIRK------FRPTLKKQRFVEVSKTESLQRRSLEETKSDGVK 1100
            +       + + P P  K  K       +   KK+   E  K E ++++  +       K
Sbjct: 603  SPVPKSPVEEVKPKPEAKAGKDEQKEEEKVEEKKEVAKESPKEEKVEKKEEKPKDVPDKK 662

Query: 1101 SLEVSETESLQQQYLAVVSGMRNLVLTETKE---------KHRFVEVGVSETETAHRWSL 1151
              E    E   ++ + +   ++  +  +TKE         K +  E G SE E   + S 
Sbjct: 663  KAESPVKEKAVEEMITITKSVKVSLEKDTKEEKPQQQEKVKEKAEEEGGSEEEVGDK-SP 721

Query: 1152 EETKSDGV--------KRFEVSETE---SLQQQDLALLSSGMQNMVLTDKKEKENNMTRY 1200
            +E+K + +        K  E  ET+   S Q+++  ++++G+      +KK ++ +  + 
Sbjct: 722  QESKKEDIAINGEVEGKEEEEQETQEKGSGQEEEKGVVTNGLDVSPAEEKKGEDRSDDKV 781

Query: 1201 II 1202
            ++
Sbjct: 782  VV 783


>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa
            neurofilament protein) (Neurofilament medium polypeptide)
            (NF-M) (Fragment)
          Length = 644

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 63/343 (18%), Positives = 129/343 (37%), Gaps = 31/343 (9%)

Query: 880  KSRIYDNFNHMPEMIRTIKKNELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEET 939
            KS + D    + E +    K E    E + ++++    E+     +           EE 
Sbjct: 252  KSEMEDALTAIAEELAVSVKEEEKEEEAEGKEEEQEAEEEVAAAKKSPVKATTPEIKEEE 311

Query: 940  DTEEEIDTEEDDFSDDEIFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEK 999
              +EE   EE++  +DE     S Q      EK  + + + E+++    A+  +   + K
Sbjct: 312  GEKEEEGQEEEEEEEDE--GVKSDQAEEGGSEKEGSSKNEGEQEEGETEAEGEVEEAEAK 369

Query: 1000 SNIKDHDLSEDEIFVPDEIKKLSSAQIGIHEKSNTEDVIFTNPNRTTTTTKPYYSQALFP 1059
               K  + SE+   V  + + ++ A++G  EK+ +       P       KP        
Sbjct: 370  EEKKTEEKSEE---VAAKEEPVTEAKVGKPEKAKSPV-----PKSPVEEVKPKAEATAGK 421

Query: 1060 NPPRKIRKFRPTLKKQRFVEVSKTESLQRRSLEETKSDGVKSLEVSETESLQQQYLAVVS 1119
               ++  +     KK+   E  K E ++++  E+ K    K  E    E   ++   +  
Sbjct: 422  GEQKEEEEKVEEEKKKAAKESPKEEKVEKKE-EKPKDVPKKKAESPVKEEAAEEAATITK 480

Query: 1120 GMRNLVLTETKE----------KHRFVEVGVSETETAHRWSLEETKSD----------GV 1159
              +  +  ETKE          K +  E G SE E + + S    K D            
Sbjct: 481  PTKVGLEKETKEGEKPLQQEKEKEKAGEEGGSEEEGSDQGSKRAKKEDIAVNGEGEGKEE 540

Query: 1160 KRFEVSETESLQQQDLALLSSGMQNMVLTDKKEKENNMTRYII 1202
            +  E  E  S ++++  ++++G+      +KK  + +  + ++
Sbjct: 541  EEPETKEKGSGREEEKGVVTNGLDLSPADEKKGGDRSEEKVVV 583


>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
          Length = 678

 Score = 37.0 bits (84), Expect = 0.33
 Identities = 34/177 (19%), Positives = 75/177 (42%), Gaps = 5/177 (2%)

Query: 835  IESESVEIPQVNLFLNGDECPLHWELNYENVLLPSKHTFLFDLGLKSRIYDNFNHMPEMI 894
            +ES  +  PQ  L    ++  L  +   E   L  +   +  +G  + +    NH  +M 
Sbjct: 473  VESRPLSQPQCKLIDEPEQLTLMDKSKVEEKNLSIQEQLIGTIGRVNVVPRRDNHKKKMA 532

Query: 895  RTIKKNELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEETDTEEEIDTEEDDFSD 954
            +  +        +D E+D    S++  ++ + +Q        +E + EEE + EE++  +
Sbjct: 533  KIEEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEE 592

Query: 955  DEIFTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEKSNIKDHDLSEDE 1011
            +E   E   +     +++   ++ D EED+    A+      +E  + +D D  +D+
Sbjct: 593  EE---EEEEEEEEEEEDEDEEDEDDAEEDE--DDAEEDEDDAEEDDDEEDDDEEDDD 644



 Score = 33.9 bits (76), Expect = 2.8
 Identities = 30/138 (21%), Positives = 61/138 (43%), Gaps = 21/138 (15%)

Query: 898  KKNELNHVEIDWEKDDLHLSEDEIKKLRRLQMGIHVSWTEETDTEEEIDTEEDDFSDDEI 957
            +  E+   E + E+D+    E+E ++    +        EE + E+E + +EDD  +DE 
Sbjct: 561  ESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDED 620

Query: 958  FTESSSQMVIHYQEKSNTEQIDTEEDDFYRSAQMGIHVVKEKSNIKDHDLSEDEIFVPDE 1017
              E         +++ + E+ D EEDD             E+ + +D D  E++    +E
Sbjct: 621  DAE---------EDEDDAEEDDDEEDD------------DEEDDDEDEDEDEEDEEEEEE 659

Query: 1018 IKKLSSAQIGIHEKSNTE 1035
             ++ S  +I  + + N +
Sbjct: 660  EEEESEKKIKRNLRKNAK 677


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.346    0.151    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,202,436
Number of Sequences: 164201
Number of extensions: 4802507
Number of successful extensions: 28168
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 27788
Number of HSP's gapped (non-prelim): 309
length of query: 1245
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1123
effective length of database: 39,941,532
effective search space: 44854340436
effective search space used: 44854340436
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 72 (32.3 bits)