BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138130.21 - phase: 0 /pseudo
(247 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YRM5_CAEEL (Q09601) Hypothetical protein R06F6.5 in chromosome II 50 7e-06
NKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1 precursor... 37 0.044
TBG_CANAL (O93807) Tubulin gamma chain (Gamma tubulin) 36 0.075
ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.1.112) (ACK-1) 36 0.099
MKH1_SCHPO (Q10407) MAP kinase kinase kinase mkh1 (EC 2.7.1.-) 33 0.49
CA2B_HUMAN (P13942) Collagen alpha 2(XI) chain precursor 33 0.64
YF59_HUMAN (Q9HCL3) Hypothetical zinc finger protein KIAA1559 33 0.83
ARG1_RAT (Q62848) ADP-ribosylation factor GTPase activating prot... 33 0.83
WAIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein interacting... 32 1.1
TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II) 32 1.1
YAWD_SCHPO (Q10187) Hypothetical protein C3F10.13 in chromosome I 32 1.4
NCA1_CHICK (P13590) Neural cell adhesion molecule 1, 180 kDa iso... 32 1.4
TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 3... 32 1.9
YL37_CAEEL (P34428) Hypothetical protein F44B9.7 in chromosome III 31 2.4
VE4_HPV05 (P06924) Probable E4 protein 31 3.2
P121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 1... 31 3.2
VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protei... 30 4.1
VNCS_PAVPK (P52502) Noncapsid protein NS-1 (Nonstructural protei... 30 4.1
TX18_MOUSE (Q9EPZ6) T-box transcription factor TBX18 (T-box prot... 30 4.1
TUD_DROME (P25823) Maternal tudor protein 30 4.1
>YRM5_CAEEL (Q09601) Hypothetical protein R06F6.5 in chromosome II
Length = 378
Score = 49.7 bits (117), Expect = 7e-06
Identities = 40/149 (26%), Positives = 65/149 (42%), Gaps = 10/149 (6%)
Query: 95 NREFSTPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEE-KGRGSPVEGVV 153
N FS P K ++ + + G + SL PAK + R +P+
Sbjct: 115 NSSFSAPTKPAPQSIQTSSFGGQAMHAPPLRSLRDKVEPAKKISRRNTFTARSTPLS--- 171
Query: 154 QPGALITLPPPPEVARPEVQRNSLPAGNLNEEEWVTVYGFSPNDTNLVLREFEKCGEILK 213
IT +A E Q A + WVTV+GF P+ +++L F + GE++
Sbjct: 172 ---TPITQRVTSRLAEAEEQPMEEEADAA--DTWVTVFGFQPSQVSILLNLFSRHGEVVS 226
Query: 214 HVPGPRDANWMHILYQNRSAAQNALNKNG 242
H P N++H+ Y + AQ A+++NG
Sbjct: 227 H-QTPSKGNFIHMRYSCVTHAQQAISRNG 254
>NKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1 precursor
(Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
Na-Ca+K exchanger)
Length = 1181
Score = 37.0 bits (84), Expect = 0.044
Identities = 40/167 (23%), Positives = 70/167 (40%), Gaps = 24/167 (14%)
Query: 9 PRSGRQSLFFQDLASPVNARR-GKFSSPGQSGASSSLWRENFGNSDLPPPPFFTLEDRSD 67
PR GR+S +SP + R G+ +P +GA ++ + + LE RS+
Sbjct: 170 PRGGRKS------SSPTHTREEGRMHTPSPAGAPRTISPTSTEKDSETTATYRMLEPRSE 223
Query: 68 FSPESGILDYQMSPETKSDHKTPIQTP---------NREFSTPAKGKSEASTSYALRGVQ 118
+ L +M P T++ ++T +P +G+ +ST+ LR V
Sbjct: 224 RTAGKTSLK-RMVPNTRTFLTREVETDLVTSPSLVGKNTLGSPRRGERNSSTT-PLRAVL 281
Query: 119 Q------NQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALI 159
Q +Q + S+ S+PA + G + G+P+ G P I
Sbjct: 282 QPTPATSEEQVTASIRMGSTPATTEGSTAAQRIGNPLSGTSTPAVRI 328
>TBG_CANAL (O93807) Tubulin gamma chain (Gamma tubulin)
Length = 502
Score = 36.2 bits (82), Expect = 0.075
Identities = 25/87 (28%), Positives = 37/87 (41%), Gaps = 20/87 (22%)
Query: 56 PPPFFTLEDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREFSTPAKGKSEASTSYALR 115
P FFTL D + ++P S ++D + S KS P+ P R
Sbjct: 77 PELFFTLSDSNTYTPRSILIDMEPSVIAKSTSALPMFNP--------------------R 116
Query: 116 GVQQNQQGSLSLNWWSSPAKSGGEQEE 142
V + QG+ + N W + K G E+EE
Sbjct: 117 NVHLSNQGNGAANNWINGYKYGTEEEE 143
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.1.112) (ACK-1)
Length = 1036
Score = 35.8 bits (81), Expect = 0.099
Identities = 37/155 (23%), Positives = 52/155 (32%), Gaps = 36/155 (23%)
Query: 54 LPPPPFF--TLEDRSDFS----------------PESGILDYQMSPETKSDHKTPIQTPN 95
LPPPP + +D DF P G +Y PE + P +
Sbjct: 629 LPPPPAYDDVAQDEDDFEICSINSTLVGAGVPAGPSQGQTNYAFVPEQA---RPPPPLED 685
Query: 96 REFSTPAKG---KSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGV 152
F P G S A T+ + +QQ L +P+ S G ++
Sbjct: 686 NLFLPPQGGGKPPSSAQTAEIFQALQQECMRQLQAPGSPAPSPSPGGDDK---------- 735
Query: 153 VQPGALITLPPPPEVARPEVQRNSLPAGNLNEEEW 187
P +P PP RP VQ + P G +W
Sbjct: 736 --PQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQW 768
>MKH1_SCHPO (Q10407) MAP kinase kinase kinase mkh1 (EC 2.7.1.-)
Length = 1116
Score = 33.5 bits (75), Expect = 0.49
Identities = 24/101 (23%), Positives = 41/101 (39%), Gaps = 2/101 (1%)
Query: 21 LASPVNARRGKFSSPGQSGASSSLWRENFGNSDLPPPPFFT--LEDRSDFSPESGILDYQ 78
L P+N+ SP + ++S L R + D PPPP T L ++ + I +
Sbjct: 510 LKMPLNSGSSAPQSPSSNTSASVLTRNFVAHRDPPPPPTETSSLRRKNTLTRRPSIRHAR 569
Query: 79 MSPETKSDHKTPIQTPNREFSTPAKGKSEASTSYALRGVQQ 119
SP + H + + F A KS S ++ + +
Sbjct: 570 SSPYIDTGHNEASKFSHTSFDPKASSKSSNSLKESVEALSE 610
>CA2B_HUMAN (P13942) Collagen alpha 2(XI) chain precursor
Length = 1736
Score = 33.1 bits (74), Expect = 0.64
Identities = 41/154 (26%), Positives = 68/154 (43%), Gaps = 29/154 (18%)
Query: 57 PPFF------TLEDRSDFSP--ESGILDYQMSPETKSDHKTPIQTPN-------REF--- 98
PP++ T D D +P E IL+ + P + + +T +Q P E+
Sbjct: 277 PPYYDVMTTGTTPDYQDPTPGEEEEILESSLLPPLEEE-QTDLQVPPTADRFQAEEYGEG 335
Query: 99 -STPAKGKSEASTSYALRGVQQNQQG-SLSLNWWSSPAKSGGEQEEKG-RGSPVEGVVQP 155
+ P +G + + Y ++ + G +LS S A + G + KG +G P V++P
Sbjct: 336 GTDPPEGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPRGLKGEKGEPA--VLEP 393
Query: 156 GALITLPPPPE-----VARPEVQRNSLPAGNLNE 184
G L+ PP PE + P +Q N P G+ E
Sbjct: 394 GMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGE 427
>YF59_HUMAN (Q9HCL3) Hypothetical zinc finger protein KIAA1559
Length = 533
Score = 32.7 bits (73), Expect = 0.83
Identities = 32/139 (23%), Positives = 57/139 (40%), Gaps = 17/139 (12%)
Query: 15 SLFFQDLASPVNARRGKFSSPGQSGASSSLWRENFGN-----SDLPPPPFFTLEDRSDFS 69
S+ F+D+A + +F P Q + EN+ N + P TL D
Sbjct: 5 SVTFRDVAIDFSQEEWEFLDPAQRDLYRDVMWENYSNFISLGPSISKPDVITLLDEERKE 64
Query: 70 PESGILD--YQMSPETKSDHKTPIQTPNREFSTPAKGK---SEASTSYALRGVQQNQQGS 124
P + + + P+ +S ++T +P ++ + E SY+L QGS
Sbjct: 65 PGMVVREGTRRYCPDLESRYRTNTLSPEKDIYEIYSFQWDIMERIKSYSL-------QGS 117
Query: 125 LSLNWWSSPAKSGGEQEEK 143
+ N W +K GE+E++
Sbjct: 118 IFRNDWECKSKIEGEKEQQ 136
>ARG1_RAT (Q62848) ADP-ribosylation factor GTPase activating protein
1 (ADP-ribosylation factor 1 GTPase activating protein)
(ARF1 GAP) (ARF1-directed GTPase-activating protein)
(GAP protein)
Length = 415
Score = 32.7 bits (73), Expect = 0.83
Identities = 46/172 (26%), Positives = 62/172 (35%), Gaps = 23/172 (13%)
Query: 5 AQRTPRSGRQSLFFQDLASPVNARRGKFSSPGQSGASSSLWRENFGNSDLPPPPFFT--L 62
AQ + GR F D++S V+ K G G WR+ FF+
Sbjct: 255 AQEKVKEGR---IFDDVSSGVSQLASKVQGVGSKG-----WRD--------VTTFFSGKA 298
Query: 63 EDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREFST--PAKGKSEASTSYALRGVQQN 120
ED SD E YQ S S + T Q+ F + P K KS +S S+
Sbjct: 299 EDTSDRPLEGH--SYQNSSGDNSQNSTIDQSFWETFGSAEPPKAKSPSSDSWTCADASTG 356
Query: 121 QQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPG-ALITLPPPPEVARPE 171
++ S S + W S + S + EG G A T P A E
Sbjct: 357 RRSSDSWDIWGSGSASNNKNSNSDGWESWEGASGEGRAKATKKAAPSTAADE 408
>WAIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein interacting
protein (WASP interacting protein) (PRPL-2 protein)
Length = 503
Score = 32.3 bits (72), Expect = 1.1
Identities = 33/135 (24%), Positives = 47/135 (34%), Gaps = 12/135 (8%)
Query: 46 RENFGNSDLPPPPFFTLEDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREF-STPAKG 104
R + +PPPP P++ +P + H+ ++ P P
Sbjct: 274 RPSIHREAVPPPP-----------PQNNKPPVPSTPRPSAPHRPHLRPPPPSRPGPPPLP 322
Query: 105 KSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPP 164
S + R Q+N S S SP +SG P PG LPPP
Sbjct: 323 PSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPP 382
Query: 165 PEVARPEVQRNSLPA 179
P V+R +LPA
Sbjct: 383 PPVSRNGSTSRALPA 397
>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)
Length = 518
Score = 32.3 bits (72), Expect = 1.1
Identities = 28/134 (20%), Positives = 41/134 (29%), Gaps = 10/134 (7%)
Query: 55 PPPPFFTLEDRSDFSPESGILDY--QMSPETKSDHKTPIQTPNREFSTPAKGKSEASTSY 112
PPPPF E D PE + Y P P+ E + A+G + +
Sbjct: 370 PPPPF---EYSIDLPPEGAEVPYVKNYEPPPPGSEPEPVPAAEGEAAPAAEGAAPPA--- 423
Query: 113 ALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVARPEV 172
G +G++ ++P G +G P +G P P E
Sbjct: 424 --EGAAPPAEGAVPPADGAAPPAEGAAPAAEGAAPPADGAAPPAEAAAAPADAAAPAAEA 481
Query: 173 QRNSLPAGNLNEEE 186
PA E
Sbjct: 482 APAEAPAAEATAAE 495
>YAWD_SCHPO (Q10187) Hypothetical protein C3F10.13 in chromosome I
Length = 612
Score = 32.0 bits (71), Expect = 1.4
Identities = 14/44 (31%), Positives = 20/44 (44%)
Query: 183 NEEEWVTVYGFSPNDTNLVLREFEKCGEILKHVPGPRDANWMHI 226
N E+ ++ F PN T + E C ++L H P NW I
Sbjct: 257 NSEKPTYIFNFKPNSTPDLRLSIESCLDLLLHPPSSAQKNWSWI 300
>NCA1_CHICK (P13590) Neural cell adhesion molecule 1, 180 kDa
isoform precursor (N-CAM 180)
Length = 1091
Score = 32.0 bits (71), Expect = 1.4
Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 16/167 (9%)
Query: 4 TAQRTPRSGRQSLFFQDLASPVNA-RRGKFSSPGQSGASSSLWRENFGNSDLPPPPFFTL 62
TAQ +P S +L +A P A SPGQ+ + + G S + PPP
Sbjct: 841 TAQNSPTSETTTLT-SSIAPPATAIPDSNAMSPGQATPAKA------GASPVSPPP---P 890
Query: 63 EDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREFSTPAKGKSEASTSYALRGVQQNQQ 122
+P + D S ++ + + + +P+ + A TS A G
Sbjct: 891 SSTPKVAPLVDLSDTPSSAPATNNLSSSVLSNQGAVLSPSTVANMAETSKAAAG--NKSA 948
Query: 123 GSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVAR 169
N S PA S +QE SP + QP T+ P E A+
Sbjct: 949 APTPANLTSPPAPSEPKQEVSSTKSPEKEAAQPS---TVKSPTETAK 992
Score = 30.4 bits (67), Expect = 4.1
Identities = 20/91 (21%), Positives = 39/91 (41%), Gaps = 1/91 (1%)
Query: 20 DLASPVNARRGKFSSPGQSGASSSLWRENFGNSDLPPPPFFTLEDRSDFSPESGILDYQM 79
+L+S V + +G SP + + GN P P + P+ + +
Sbjct: 914 NLSSSVLSNQGAVLSPSTVANMAETSKAAAGNKSAAPTPANLTSPPAPSEPKQEVSSTK- 972
Query: 80 SPETKSDHKTPIQTPNREFSTPAKGKSEAST 110
SPE ++ + +++P P+ KSEA++
Sbjct: 973 SPEKEAAQPSTVKSPTETAKNPSNPKSEAAS 1003
>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36
homolog) (Zfp-36) (TIS11A protein) (TIS11)
Length = 324
Score = 31.6 bits (70), Expect = 1.9
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 15/172 (8%)
Query: 11 SGRQSLFFQDLASPVNARRGKFSSPGQSGASSSLWRENFGNSDLPPPPFFTLEDR--SDF 68
SG SL D + P A R G S+SL PPP F L R SD+
Sbjct: 33 SGPWSLSSSDSSLPEVAAR-------LPGRSTSLVEGRSCGWVPPPPGFAPLAPRPSSDW 85
Query: 69 SPESGILDYQMSPETKSDHKTPIQTPNREFSTPAKGKSEASTSYALRGVQQNQQGSLSLN 128
SP +P T S +KT + R FS + + A +A G+ + +Q S
Sbjct: 86 SPSP--TSPTATPTTSSRYKTELC---RTFSESGRCRYGAKCQFA-HGLGELRQASRHPK 139
Query: 129 WWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVARPEVQRNSLPAG 180
+ + Q GS + P + P P V R + + LP+G
Sbjct: 140 YKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLPSG 191
>YL37_CAEEL (P34428) Hypothetical protein F44B9.7 in chromosome III
Length = 466
Score = 31.2 bits (69), Expect = 2.4
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Query: 32 FSSPGQSGASSSLWRENFGNSDLPPPPFFTLEDRSDFSPESGILDYQMSPETKSD-HKTP 90
FSSP ++SL ++ ++ LPP P S S +L + T ++ H P
Sbjct: 119 FSSPPMHHPTTSLLAQHLSSAPLPPAP------PQQQSHLSQLLQQPTTYSTATNPHAAP 172
Query: 91 IQTPNREFSTPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVE 150
QT R A+ A R QQ Q+ L + ++G Q E+ +P
Sbjct: 173 TQTIARRPDNEARNAQLQEQELAAR-QQQQQEYMLQQHQQQQQNRAGQLQAEQAFANPPT 231
Query: 151 GVVQPGALITLPPPPEVARPEVQR 174
+ P T PP + + QR
Sbjct: 232 VSIPPQ---TGHPPQQTSASSQQR 252
>VE4_HPV05 (P06924) Probable E4 protein
Length = 245
Score = 30.8 bits (68), Expect = 3.2
Identities = 40/149 (26%), Positives = 51/149 (33%), Gaps = 18/149 (12%)
Query: 55 PPPPFFTLEDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREFSTPAKGKSEASTSYAL 114
PPPP L R D SP + E +D P +R+ S +G
Sbjct: 33 PPPPQPPLTPRPDSSPHQNSHNKPKPEEEGTDGGPPASQGDRKRSKGDQGPDTGPGLGPG 92
Query: 115 RGVQQNQQGSLSLNWWSSPAKS-------GGEQEEKGRGSPVEGVVQ--PGALITLPPPP 165
RG + L P +S E+G P EG V+ PG PPPP
Sbjct: 93 RG-PSPKPTPLGPPPGPGPRRSPRLGPLQADRDPEEGPQPPAEGEVEGHPGGDQGHPPPP 151
Query: 166 EVA--------RPEVQRNSLPAGNLNEEE 186
A P+VQ+ P G EE
Sbjct: 152 PPAPHNGHSGHEPKVQQPEGPEGREGHEE 180
>P121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121
(Pore membrane protein of 121 kDa)
Length = 1200
Score = 30.8 bits (68), Expect = 3.2
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 21/144 (14%)
Query: 24 PVNARRGKFSSPGQSGASSSLWRENFGNSDLPPPPFFTLEDRSDFSPESGILDYQMSPET 83
P ++R SS + S LW+ + S PF + +PE P
Sbjct: 380 PSSSRNAITSSYSSTRGISQLWKRSGPTSS----PFSSPASSRSQTPER--------PAK 427
Query: 84 KSDHKTPIQTPNREFSTPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEK 143
K+ + P Q + S P E+ QQ S W+SP G + K
Sbjct: 428 KTREEEPCQQSSS--SPPLVTDKESPGEKVTDTTTGKQQSS-----WTSPPTPGSSGQRK 480
Query: 144 GRGSPVEGVVQPGALITLPPPPEV 167
+ + + G +TLPPPPE+
Sbjct: 481 RKIQLLPS--RRGDQLTLPPPPEL 502
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein
NS1)
Length = 660
Score = 30.4 bits (67), Expect = 4.1
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 KTPIQTP-NREFSTPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSP 133
+TPI TP + + ST K S A +YA +Q++ +L+L WS P
Sbjct: 569 QTPINTPTDSQISTSVK-TSPADNNYAATPIQEDLDLALALEPWSEP 614
>VNCS_PAVPK (P52502) Noncapsid protein NS-1 (Nonstructural protein
NS1)
Length = 662
Score = 30.4 bits (67), Expect = 4.1
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 KTPIQTP-NREFSTPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSP 133
+TPI TP + + ST K S A +YA +Q++ +L+L WS P
Sbjct: 569 QTPINTPTDSQISTSVK-TSPADNNYAATPIQEDLDLALALEPWSEP 614
>TX18_MOUSE (Q9EPZ6) T-box transcription factor TBX18 (T-box protein
18)
Length = 613
Score = 30.4 bits (67), Expect = 4.1
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 99 STPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGAL 158
S PA+ ++A S RG + + L S A GG +GSPV G+ +PG
Sbjct: 84 SGPARSCADAERSCGSRGAAGSCEDGF-LQGASPLASPGGSP----KGSPVPGLARPGTP 138
Query: 159 ITLPPPPEV 167
+ P P V
Sbjct: 139 LPAPQAPRV 147
>TUD_DROME (P25823) Maternal tudor protein
Length = 2515
Score = 30.4 bits (67), Expect = 4.1
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 60 FTLEDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREFSTPAKGKSEASTSYALRGVQQ 119
F+ E +S S SG+ + + + +TPIQ+P AK + S S + R +
Sbjct: 884 FSCETQSTGSYSSGMSSPRKG-NRQQNGRTPIQSPRHNEKQEAKKNARFSNSESPRRSRD 942
Query: 120 NQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEG 151
QQG N S A G Q+ + + S ++G
Sbjct: 943 GQQG----NQRSQNAPQGYAQKPQRQKSTLDG 970
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,513,112
Number of Sequences: 164201
Number of extensions: 1671853
Number of successful extensions: 3449
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3424
Number of HSP's gapped (non-prelim): 65
length of query: 247
length of database: 59,974,054
effective HSP length: 107
effective length of query: 140
effective length of database: 42,404,547
effective search space: 5936636580
effective search space used: 5936636580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC138130.21