BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138087.2 + phase: 0 /pseudo
(296 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BUB1_MOUSE (O08901) Mitotic checkpoint serine/threonine-protein ... 37 0.045
MSH6_ARATH (O04716) DNA mismatch repair protein MSH6-1 (AtMsh6-1) 37 0.059
UTX_MOUSE (O70546) Ubiquitously transcribed X chromosome tetratr... 36 0.13
MUC2_HUMAN (Q02817) Mucin 2 precursor (Intestinal mucin 2) 36 0.13
YM92_CAEEL (P34531) Hypothetical protein M01A8.2 in chromosome III 34 0.50
TBF1_YEAST (Q02457) TBF1 protein (TTAGGG repeat-binding factor 1... 32 1.9
CYS4_DICDI (P54639) Cysteine proteinase 4 precursor (EC 3.4.22.-) 32 1.9
PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment) 32 2.5
MU5B_HUMAN (Q9HC84) Mucin 5B precursor (Mucin 5 subtype B, trach... 32 2.5
SLAM_MOUSE (Q9QUM4) Signaling lymphocytic activation molecule pr... 31 3.2
OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein) 31 3.2
MUC1_MOUSE (Q02496) Mucin 1 precursor (Polymorphic epithelial mu... 31 3.2
MU5A_HUMAN (P98088) Mucin 5AC (Mucin 5 subtype AC, tracheobronch... 31 3.2
MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR) 31 4.2
CCAH_HUMAN (O95180) Voltage-dependent T-type calcium channel alp... 31 4.2
REP1_MOUSE (O54916) RalBP1 associated Eps domain containing prot... 30 5.5
MYSD_DICDI (P34109) Myosin ID heavy chain 30 5.5
MCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor (M... 30 5.5
RLM1_YEAST (Q12224) Transcription factor RLM1 30 7.2
MACA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule-1 p... 30 7.2
>BUB1_MOUSE (O08901) Mitotic checkpoint serine/threonine-protein
kinase BUB1 (EC 2.7.1.37) (MBUB1) (BUB1A)
Length = 1058
Score = 37.4 bits (85), Expect = 0.045
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 11/156 (7%)
Query: 30 SLITELGIELRVSDEEHRELLGRVNSD*IIHRTRDWRETGIYQPPGCTTSQPVHDILPSP 89
S I + GI ++ E +ELL + +R R TGI+ P TTS+P+H
Sbjct: 119 SAIFQTGIH---NEAEPKELLQQQ------YRLFQARLTGIHLPAQATTSEPLHSAQILN 169
Query: 90 TVSASNKKP-KTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSSSNLNAPAE 148
V +N P K S VP S G G++S + ++ + S S+ AP
Sbjct: 170 QVMMTNSSPEKNSACVPKSQGSECSGVASSTCDEKSNMEQRVIMISKSECSVSSSVAPKP 229
Query: 149 EAQFDPLIGKKVWTRWPEDSHFYEAVITDYNPDE*H 184
EAQ + K+ R + F E YN + H
Sbjct: 230 EAQ-QVMYCKEKLIRGDSEFSFEELRAQKYNQRKKH 264
>MSH6_ARATH (O04716) DNA mismatch repair protein MSH6-1 (AtMsh6-1)
Length = 1324
Score = 37.0 bits (84), Expect = 0.059
Identities = 32/115 (27%), Positives = 45/115 (38%), Gaps = 19/115 (16%)
Query: 87 PSPTVSASNKK-----------PKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFS 135
PSP+ S SNKK P S S P + P SS P + S GP
Sbjct: 37 PSPSPSLSNKKTPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLPARSPSPGPDTPSPVQ 96
Query: 136 NHNSSSNL-----NAPAEEAQF---DPLIGKKVWTRWPEDSHFYEAVITDYNPDE 182
+ L +P + D ++GK+V WP D +Y+ +T Y+ E
Sbjct: 97 SKFKKPLLVIGQTPSPPQSVVITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGE 151
>UTX_MOUSE (O70546) Ubiquitously transcribed X chromosome
tetratricopeptide repeat protein (Ubiquitously
transcribed TPR protein on the X chromosome) (Fragment)
Length = 1333
Score = 35.8 bits (81), Expect = 0.13
Identities = 26/87 (29%), Positives = 42/87 (47%), Gaps = 6/87 (6%)
Query: 49 LLGRVNSD*IIHRTRDWRETGIYQ--PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPP 106
+L ++ S ++ + R+TG+ Q P G V LP T S S ++P+ + P
Sbjct: 426 MLEQLESQFVLMQQHQMRQTGVAQVRPTGILNGPTVDSSLP--TNSVSGQQPQLPLTRMP 483
Query: 107 SLGQSLPGLSSVKPVQCASTGPTGARH 133
S+ Q PG+ + P Q + GP A H
Sbjct: 484 SVSQ--PGVHTACPRQTLANGPFSAGH 508
>MUC2_HUMAN (Q02817) Mucin 2 precursor (Intestinal mucin 2)
Length = 5179
Score = 35.8 bits (81), Expect = 0.13
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGP 128
PP TT+ P+ PSP +S + P T+ PP+ S P + P +T P
Sbjct: 1440 PPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPP 1495
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/71 (23%), Positives = 31/71 (42%)
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGAR 132
PP TT+ P PSP ++ P ++ ++PP+ S P ++ P + P
Sbjct: 1486 PPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTT 1545
Query: 133 HFSNHNSSSNL 143
+ S++ L
Sbjct: 1546 PITPPTSTTTL 1556
Score = 30.8 bits (68), Expect = 4.2
Identities = 15/56 (26%), Positives = 25/56 (43%)
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGP 128
PP TT+ P PSP + P ++ ++PP+ S P ++ P + P
Sbjct: 1604 PPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSP 1659
Score = 30.8 bits (68), Expect = 4.2
Identities = 15/56 (26%), Positives = 25/56 (43%)
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGP 128
PP TT+ P PSP + P ++ ++PP+ S P ++ P + P
Sbjct: 1525 PPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSP 1580
Score = 30.0 bits (66), Expect = 7.2
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 2/59 (3%)
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLS--SVKPVQCASTGPT 129
PP TT+ P PSP + + P T+ PP+ P S ++ P S PT
Sbjct: 1588 PPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPT 1646
>YM92_CAEEL (P34531) Hypothetical protein M01A8.2 in chromosome III
Length = 937
Score = 33.9 bits (76), Expect = 0.50
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 91 VSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFS-------NHNSSSNL 143
V K P PP+ + P +SS+ AS GP F+ SSS+
Sbjct: 467 VEKEKKIPSKPVVSPPTTAEKKPVVSSIPSTSSASKGPFPTSSFAGGKLQGPRKTSSSST 526
Query: 144 NAPAEEAQFDPLIGKKVWTRWPEDSHFYEAVITDYN 179
A++ + P+ K+ +R +H +EA + N
Sbjct: 527 TTSAKKQKNPPIDEKEKLSRLQHSTHAFEATLIVMN 562
>TBF1_YEAST (Q02457) TBF1 protein (TTAGGG repeat-binding factor 1)
(TBF alpha)
Length = 562
Score = 32.0 bits (71), Expect = 1.9
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 77 TTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSN 136
+T++P H +PT S+K P++ QS+ + + +S+GP S+
Sbjct: 342 STARPNHYSTHTPTTDVSSKN--------PAITQSIVDAAVAASMSNSSSGP-----HSS 388
Query: 137 HNSSSNLNAPAEEAQFDPLIGKKVWTRWPEDS 168
HN+SSN N P K+ W++ E++
Sbjct: 389 HNNSSNSNNNGSIGLRKPK-AKRTWSKEEEEA 419
>CYS4_DICDI (P54639) Cysteine proteinase 4 precursor (EC 3.4.22.-)
Length = 442
Score = 32.0 bits (71), Expect = 1.9
Identities = 27/97 (27%), Positives = 41/97 (41%), Gaps = 12/97 (12%)
Query: 67 ETGIYQPPGCTTSQPVHDIL--------PSPTVSASNKKPKTSHSVPPSLGQSLPG---- 114
E+GIY P CT +Q H +L S + S+S K +S + + S G
Sbjct: 261 ESGIYYEPACTPTQLDHGVLVVGYGSGSSSSSGSSSGKSSSSSSTGGKTSSSSSSGKASS 320
Query: 115 LSSVKPVQCASTGPTGARHFSNHNSSSNLNAPAEEAQ 151
SS K +S+G T + S S S + ++ Q
Sbjct: 321 SSSGKASSSSSSGKTSSAASSTSGSQSGSQSGSQSGQ 357
>PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment)
Length = 5120
Score = 31.6 bits (70), Expect = 2.5
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 73 PPGCTTSQPVHDILPSPTVSASNKK---PKTSHS--------VPPSLGQSLPGLSSVKPV 121
PP T P PSP + KK PK S VP S+PG VK
Sbjct: 441 PPKQKTPTPASTAKPSPQLQPGQKKDASPKPDPSQQADSKKPVPQKKQPSMPGSPPVKSK 500
Query: 122 QC-ASTGPTGARHFSNHNSSSNLNAPAEEAQFDPLIGK 158
Q A TG + S S AEE Q P I K
Sbjct: 501 QTHAEPSDTGQQIDSTPKSDQVKPTQAEEKQNQPSIQK 538
>MU5B_HUMAN (Q9HC84) Mucin 5B precursor (Mucin 5 subtype B,
tracheobronchial) (High molecular weight salivary mucin
MG1) (Sublingual gland mucin)
Length = 5703
Score = 31.6 bits (70), Expect = 2.5
Identities = 27/102 (26%), Positives = 43/102 (41%), Gaps = 5/102 (4%)
Query: 68 TGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTG 127
TG P TT H +P +S+ + +T+ S PPS G + PG ++ A+
Sbjct: 2761 TGTSHTPAATTGTTQHS---TPALSSPHPSSRTTES-PPSPGTTTPGHTTATSRTTATAT 2816
Query: 128 PTGARHFSNHNSSSNLNAPAEEAQFDPLIGKKVWTRWPEDSH 169
P+ R S SS +AP + W+ W + S+
Sbjct: 2817 PSKTR-TSTLLPSSPTSAPITTVVTMGCEPQCAWSEWLDYSY 2857
Score = 30.0 bits (66), Expect = 7.2
Identities = 26/102 (25%), Positives = 42/102 (40%), Gaps = 5/102 (4%)
Query: 68 TGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTG 127
TG P TT H +P +S+ + +T+ S PPS G + PG ++ A+
Sbjct: 2232 TGTSHTPAATTGTTQHS---TPALSSPHPSSRTTES-PPSPGTTTPGHTTATSRTTATAT 2287
Query: 128 PTGARHFSNHNSSSNLNAPAEEAQFDPLIGKKVWTRWPEDSH 169
P+ R S S +AP + W+ W + S+
Sbjct: 2288 PSKTR-TSTLLPSQPTSAPITTVVTMGCEPQCAWSEWLDYSY 2328
>SLAM_MOUSE (Q9QUM4) Signaling lymphocytic activation molecule
precursor
Length = 343
Score = 31.2 bits (69), Expect = 3.2
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 12/159 (7%)
Query: 25 CSYLESLITELG--IELRVSDEEHRELLGRVNSD*IIHRT-RDWRETGIYQPPGCTTSQP 81
CS L + + G + SDE LL R N ++H T + + IY CT S P
Sbjct: 161 CSLLLACTVKKGDHVTYSWSDEAGTHLLSRANRSHLLHITLSNQHQDSIYN---CTASNP 217
Query: 82 VHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSSS 141
V I + +S+ K ++S P + +L L V T S+
Sbjct: 218 VSSISRTFNLSSQACKQESSSESSPWMQYTLVPLGVVIIFILVF---TAIIMMKRQGKSN 274
Query: 142 NLNAPAEEAQFDPLIGKKVWTRWPEDSHFYEAVITDYNP 180
+ P EE I +V P++ ++A +TD +P
Sbjct: 275 HCQPPVEEKSL--TIYAQVQKSGPQEKKLHDA-LTDQDP 310
>OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein)
Length = 2716
Score = 31.2 bits (69), Expect = 3.2
Identities = 27/89 (30%), Positives = 41/89 (45%), Gaps = 10/89 (11%)
Query: 40 RVSDEEHRELLGRVNSD*IIHRTRDWRETGIYQPPGCTTSQPVHDILPSPTVSASNKKPK 99
+ S H+EL+G+ ++D +G PPG Q V PSPT S+
Sbjct: 469 QASPSPHQELIGQNSNDSSSGGAHSGMGSG---PPGTPNPQQVMRPTPSPTGSSG----- 520
Query: 100 TSHSVPPSLGQSLPGLSSVKPVQCASTGP 128
S S+ P++ Q+ P +S Q +S GP
Sbjct: 521 -SRSMSPAVAQNHP-ISRPASNQSSSGGP 547
>MUC1_MOUSE (Q02496) Mucin 1 precursor (Polymorphic epithelial
mucin) (PEMT) (Episialin)
Length = 630
Score = 31.2 bits (69), Expect = 3.2
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 72 QPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGA 131
+PPG +TS PV S T S + + P+ S S G S P ++ PV AS+
Sbjct: 58 RPPGDSTSSPVQ----SSTSSPATRAPEDSTSTAVLSGTSSP--ATTAPVNSASS----- 106
Query: 132 RHFSNHNSSSNLNAPAEEAQFDPLI 156
++ ++SS +P +++ P++
Sbjct: 107 -PVAHGDTSSPATSPLKDSNSSPVV 130
>MU5A_HUMAN (P98088) Mucin 5AC (Mucin 5 subtype AC,
tracheobronchial) (Tracheobronchial mucin) (TBM) (Major
airway glycoprotein) (Fragment)
Length = 1233
Score = 31.2 bits (69), Expect = 3.2
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGAR 132
P TTS P P + S ++ S P + S PG ++ PV ST P
Sbjct: 128 PTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPG-TTPSPVPTTSTTPVSKT 186
Query: 133 HFSNHNSSSNLNAPAEEAQFDPLIGKKVWTRW 164
S+ + S ++ + PL WT+W
Sbjct: 187 STSHLSVSKTTHSQPVTSDCHPLC---AWTKW 215
>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)
Length = 982
Score = 30.8 bits (68), Expect = 4.2
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 78 TSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSNH 137
+S P H + SP S +N P++S S P ++ S +C+ + P SN
Sbjct: 272 SSPPSHCSVKSPVSSPNNVTPRSSVSSPANINNS----------RCSVSSP------SNT 315
Query: 138 NSSSNLNAPA 147
N+ S L++PA
Sbjct: 316 NNRSTLSSPA 325
>CCAH_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H
subunit (Voltage-gated calcium channel alpha subunit
Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2
subunit)
Length = 2353
Score = 30.8 bits (68), Expect = 4.2
Identities = 27/85 (31%), Positives = 38/85 (43%), Gaps = 7/85 (8%)
Query: 69 GIYQPP--GCTTSQPVHDILPSPTVSASNKKPKT----SHSVPPSLGQSLPGLSSVKPVQ 122
G PP CT + P+ SP + A+ P + S S P LG P +S++
Sbjct: 1070 GSLSPPLIMCTAATPMPTPKSSPFLDAAPSLPDSRRGSSSSGDPPLGDQKPP-ASLRSSP 1128
Query: 123 CASTGPTGARHFSNHNSSSNLNAPA 147
CA GP+GA + SS AP+
Sbjct: 1129 CAPWGPSGAWSSRRSSWSSLGRAPS 1153
>REP1_MOUSE (O54916) RalBP1 associated Eps domain containing protein
1 (RalBP1-interacting protein 1)
Length = 743
Score = 30.4 bits (67), Expect = 5.5
Identities = 26/91 (28%), Positives = 31/91 (33%), Gaps = 13/91 (14%)
Query: 85 ILPSPTVSASNKKPKTSHSVP---PSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSSS 141
++P P KK SH PS Q P V P Q T P R S H S
Sbjct: 77 VIPPPPGRGQVKKGPGSHDAVQPRPSAEQQEPASPVVSPQQSPPTSPHTWRKHSRHPSGG 136
Query: 142 NLN----------APAEEAQFDPLIGKKVWT 162
N +P +AQ G VW+
Sbjct: 137 NSERPLTGPGPFWSPFGDAQAGSSAGDAVWS 167
>MYSD_DICDI (P34109) Myosin ID heavy chain
Length = 1109
Score = 30.4 bits (67), Expect = 5.5
Identities = 17/83 (20%), Positives = 36/83 (42%), Gaps = 1/83 (1%)
Query: 59 IHRTRDWRETGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTS-HSVPPSLGQSLPGLSS 117
+ + +D + + CTTS+ + + P +KP T+ + S+G + LS+
Sbjct: 514 VDKNKDLLFNDLVELAACTTSKLIPQLFPEINCEKDKRKPTTAGFKIKESIGALVKALSA 573
Query: 118 VKPVQCASTGPTGARHFSNHNSS 140
P P G + ++ ++S
Sbjct: 574 CTPHYIRCIKPNGNKRANDFDTS 596
>MCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor
(Mu-protocadherin)
Length = 831
Score = 30.4 bits (67), Expect = 5.5
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 73 PP--GCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTG 130
PP G TT + + +P S ++++P T+ S S+G PG ++++P AS+ P G
Sbjct: 463 PPEAGGTTGPSSNTTMEAPLTSGTSQRPATTSS-GGSVGPFPPGGTTLRPPTPASSIPGG 521
Query: 131 ARHFSNHNSSSNLNAPAEEAQ 151
+ S + AQ
Sbjct: 522 SPTLGTSTSPQTTTPGGDSAQ 542
>RLM1_YEAST (Q12224) Transcription factor RLM1
Length = 676
Score = 30.0 bits (66), Expect = 7.2
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 67 ETGIYQPPGCTTSQPVHDILP-SPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCA- 124
ET P G S+ VHD++ SP VS+ + P S + + + PVQ A
Sbjct: 496 ETSNGPPTGSLPSKFVHDLMSNSPNVSSISMFPDWSMGPNSAKPGNTNNPGTFPPVQTAV 555
Query: 125 ---------STGPTGARHFSNHNSSSNLNA 145
ST T + +N+N+SSN N+
Sbjct: 556 NNGNSSNISSTNNTNNNNNNNNNNSSNNNS 585
>MACA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule-1
precursor (MAdCAM-1) (hMAdCAM-1)
Length = 406
Score = 30.0 bits (66), Expect = 7.2
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 72 QPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPP-SLGQSLPGLSSVKPVQCASTGPTG 130
+PP T+ +P + P + S + P T+ PP + Q P +S +P S P
Sbjct: 231 EPPDTTSPEPPNTTSPESPDTTSPESPDTTSQEPPDTTSQEPPDTTSQEPPDTTSPEPP- 289
Query: 131 ARHFSNHNSSSNLNAPAEEAQFDPLIGKKVWTRWPEDS 168
+ +S AP + + P TR PE S
Sbjct: 290 -------DKTSPEPAPQQGSTHTPRSPGSTRTRRPEIS 320
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.335 0.147 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,854,850
Number of Sequences: 164201
Number of extensions: 1474845
Number of successful extensions: 5946
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 5869
Number of HSP's gapped (non-prelim): 89
length of query: 296
length of database: 59,974,054
effective HSP length: 109
effective length of query: 187
effective length of database: 42,076,145
effective search space: 7868239115
effective search space used: 7868239115
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 65 (29.6 bits)
Medicago: description of AC138087.2