BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138063.5 + phase: 0 /pseudo
(840 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NU60_YEAST (P39705) Nucleoporin NUP60 (Nuclear pore protein NUP60) 35 0.63
OXDD_HUMAN (Q99489) D-aspartate oxidase (EC 1.4.3.1) (DASOX) (DDO) 35 0.83
SIL1_CYLFU (Q9SE35) Silaffin 1 precursor (natSil-1) [Contains: S... 35 1.1
OCLN_HUMAN (Q16625) Occludin 35 1.1
UL17_SHV21 (Q01021) Gene 32 protein 34 1.8
OCLN_MOUSE (Q61146) Occludin 33 2.4
LDHD_STRPY (Q99ZM2) D-lactate dehydrogenase (EC 1.1.1.28) (D-LDH... 33 2.4
MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 33 3.1
OCLN_CANFA (Q28269) Occludin 33 4.1
AFT1_YEAST (P22149) Iron-regulated transcriptional repressor AFT1 33 4.1
TRA5_LACLA (P35881) Transposase for insertion sequence element I... 32 5.4
TRA0_MYCSM (P35883) Transposase for insertion sequence element I... 32 5.4
POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast prec... 32 5.4
PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast... 32 7.0
>NU60_YEAST (P39705) Nucleoporin NUP60 (Nuclear pore protein NUP60)
Length = 539
Score = 35.4 bits (80), Expect = 0.63
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 556 FEVDDDVEESNRHVSIQNELNAIQERFNKADYNMKLIIKEQMREMTFPHTTSLTPPIQKL 615
F +VE + +N +A + FN + K ++ + E+T +T + P +
Sbjct: 401 FNTSRNVEPTENAYKSENAPSASSKEFNFTNLQAKPLVGKPKTELTKGDSTPVQPDLSVT 460
Query: 616 KTKGAQKG-----AQKRKRSTLDDSSTTREPSFWEHVDAQFPDSQASQ 658
K + KG QK+ RS L + +D F + +A +
Sbjct: 461 PQKSSSKGFVFNSVQKKSRSNLSQENDNEGKHISASIDNDFSEEKAEE 508
>OXDD_HUMAN (Q99489) D-aspartate oxidase (EC 1.4.3.1) (DASOX) (DDO)
Length = 341
Score = 35.0 bits (79), Expect = 0.83
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 359 IMNAWEVIVSSPSEEL--YADAVLQFRKVCE-QFPKFLKYVESTILEPLK 405
+++ W++ S+P+EE+ +AD VL FRK+ E + KF +YV LK
Sbjct: 91 LVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYVFGQAFTTLK 140
>SIL1_CYLFU (Q9SE35) Silaffin 1 precursor (natSil-1) [Contains:
Silaffin-1B; Silaffin-1A2; Silaffin-1A1]
Length = 265
Score = 34.7 bits (78), Expect = 1.1
Identities = 18/39 (46%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 54 SYSGSGRRKPKLVLAFERSGEYKGTKKSKREGTGSRKCG 92
SYSGS K + +L+ ++SG Y G+K SKR S+K G
Sbjct: 169 SYSGSKGSKRR-ILSSKKSGSYSGSKGSKRRNLSSKKSG 206
Score = 34.7 bits (78), Expect = 1.1
Identities = 18/39 (46%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 54 SYSGSGRRKPKLVLAFERSGEYKGTKKSKREGTGSRKCG 92
SYSGS K + +L+ ++SG Y G+K SKR S+K G
Sbjct: 207 SYSGSKGSKRR-ILSSKKSGSYSGSKGSKRRNLSSKKSG 244
Score = 32.3 bits (72), Expect = 5.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 54 SYSGSGRRKP--KLVLAFERSGEYKGTKKSKREGTGSRKCG 92
SYSG +K + +L+ ++SG Y G+K SKR S+K G
Sbjct: 147 SYSGYSTKKSGSRRILSSKKSGSYSGSKGSKRRILSSKKSG 187
>OCLN_HUMAN (Q16625) Occludin
Length = 522
Score = 34.7 bits (78), Expect = 1.1
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 544 LDEINIHWKKLCFEVDDDVEESNRHVSIQNELNAIQERFNKADYNMK 590
LDEIN +L E+DD EES +++ +E N +++ ADY K
Sbjct: 450 LDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSK 496
>UL17_SHV21 (Q01021) Gene 32 protein
Length = 441
Score = 33.9 bits (76), Expect = 1.8
Identities = 27/102 (26%), Positives = 42/102 (40%), Gaps = 9/102 (8%)
Query: 244 TNQYKMPLFEIVGLTSTEMTYNVGFAFLTMEKEDNFTWGLQESANLLKCKKQMPKVIVTD 303
TN YK PL + L + + F ED E +LL+ K MPKV
Sbjct: 154 TNLYKNPLGVLANLLQSRPQSSPRHHFAL---EDPGKVRGYEQPSLLQTDKAMPKVSYVK 210
Query: 304 RDTGLMNA------VANIFPKSTALVCEFHILKNVRARCILD 339
++N+ V +IF K + +C + + N + +LD
Sbjct: 211 HKWSILNSEPTVTCVKHIFTKKSYFICSYPTMSNSQCTSVLD 252
>OCLN_MOUSE (Q61146) Occludin
Length = 521
Score = 33.5 bits (75), Expect = 2.4
Identities = 17/55 (30%), Positives = 31/55 (55%)
Query: 544 LDEINIHWKKLCFEVDDDVEESNRHVSIQNELNAIQERFNKADYNMKLIIKEQMR 598
LD++N +L E+DD EES +++ +E N +++ ADY K +Q++
Sbjct: 449 LDDVNKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLK 503
>LDHD_STRPY (Q99ZM2) D-lactate dehydrogenase (EC 1.1.1.28) (D-LDH)
(D-specific D-2-hydroxyacid dehydrogenase)
Length = 330
Score = 33.5 bits (75), Expect = 2.4
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 275 KEDNFTWGLQESANLLKCKKQMPKVIVTDRDTGLMNAVANIFPKSTALVCEFHILKNVRA 334
K+ NFTWGL +L M I+ GL A A IF V + I ++ A
Sbjct: 128 KKQNFTWGLPIRGRVL---GDMTVAIIGTGRIGL--ATAKIFKGFGCKVVGYDIYQSDAA 182
Query: 335 RCILDCKVKDSKGKHVKSSDLVNTIM 360
+ +LD K+S + +K +DLV+ M
Sbjct: 183 KAVLD--YKESVEEAIKDADLVSLHM 206
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia
protein 3 homolog (Histone-lysine N-methyltransferase,
H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to
ALR protein)
Length = 4911
Score = 33.1 bits (74), Expect = 3.1
Identities = 38/182 (20%), Positives = 68/182 (36%), Gaps = 19/182 (10%)
Query: 557 EVDDDVEESNRHVSIQNE-LNAIQERFNKADYNMKLIIKEQMREMTFPHTTSLTPP---- 611
EV +++E +++Q E L ++E K M +T P T ++P
Sbjct: 648 EVTENIEVVTHQITVQQEQLQLLEEPETVVSREESRPPKLVMESVTLPLETLVSPHEESI 707
Query: 612 ---------IQKLKTKGAQKGAQKRKRSTLDDSSTTREPSFWEHVDAQFPDS--QASQTK 660
I++L+ + QK + +D T + V Q S +S+T+
Sbjct: 708 SLCPEEQLVIERLQGEKEQKENSELSTGLMDSEMTPTIEGCVKDVSYQGGKSIKLSSETE 767
Query: 661 PSLQKKKSVCVVNPSSTPTPTQYIPCIDQMPNVMKPYIEKIVNVDGDGYCGYRVVAENLG 720
S + + SS+PTP+ +P D + N N+ Y V +G
Sbjct: 768 SSFSSSADISKADVSSSPTPSSDLPSHDMLHNYPSALSSSAGNIMPTTYIS---VTPKIG 824
Query: 721 LG 722
+G
Sbjct: 825 MG 826
>OCLN_CANFA (Q28269) Occludin
Length = 521
Score = 32.7 bits (73), Expect = 4.1
Identities = 18/55 (32%), Positives = 30/55 (53%)
Query: 544 LDEINIHWKKLCFEVDDDVEESNRHVSIQNELNAIQERFNKADYNMKLIIKEQMR 598
LDEIN +L E+DD EES +++ +E N +++ DY K +Q++
Sbjct: 449 LDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSPDYKNKRNYCKQLK 503
>AFT1_YEAST (P22149) Iron-regulated transcriptional repressor AFT1
Length = 690
Score = 32.7 bits (73), Expect = 4.1
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 70 ERSGEYKGTKKSKREGTGSRKCGCPFRLRGYFS-ATKLWSLNIVSGLHNHKME 121
+ S + + K K++ SR CPFR+R +S K WS+ ++ H+H+++
Sbjct: 192 QTSPDQTSSIKPKKKRCVSRFNNCPFRVRATYSLKRKRWSIVVMDNNHSHQLK 244
>TRA5_LACLA (P35881) Transposase for insertion sequence element
IS905
Length = 391
Score = 32.3 bits (72), Expect = 5.4
Identities = 45/197 (22%), Positives = 82/197 (40%), Gaps = 35/197 (17%)
Query: 214 TVQDLFFAHPESVKLFNTFP-----TVLVMDSTY----KTNQYKMPLFEIVGLTSTEMTY 264
T+ ++ A E+V F+ +VL +D TY + K + +G+T
Sbjct: 133 TISNISKATQENVATFHERSLEANYSVLFLDGTYLPLRRGTVSKECIHIALGITPEGQKA 192
Query: 265 NVGFAFLTMEKEDNFTWGLQESANLLKCKKQ---MPKVIVTDRDTGLMNAVANIFPKSTA 321
+G+ E+N +W S L K + Q ++VTD GL ++ +P +
Sbjct: 193 VLGYEIAP--NENNASW----STLLDKLQNQGIQQVSLVVTDGFKGLEQIISQAYPLAKQ 246
Query: 322 LVCEFHILKNVRARCILDCKVKDSKGKHVKSSDLVNTIMNAWEVIVSSPSEELYADAVLQ 381
C HI +N+ ++ VK +D I+ ++ I + + E+ A+
Sbjct: 247 QRCLIHISRNLASK--------------VKRADRA-VILEQFKTIYRAENLEMAVQALEN 291
Query: 382 FRKVCEQFPKFLKYVES 398
F + E PK+ K +ES
Sbjct: 292 F--IAEWKPKYRKVMES 306
>TRA0_MYCSM (P35883) Transposase for insertion sequence element
IS6120
Length = 323
Score = 32.3 bits (72), Expect = 5.4
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 40/212 (18%)
Query: 277 DNFTWGLQESANLLK-CKKQ---MPKVIVTDRDTGLMNAVANIFPKSTALVCEFHILKNV 332
D + + A+LL+ CK++ P + + D G AV +FP + C FH NV
Sbjct: 101 DGYRESAESWADLLRDCKRRGMTAPVLAIGDGALGFWKAVREVFPATKEQRCWFHKQANV 160
Query: 333 RARCILDCKVKDSKGKHVKSSDLVNTIMNAWEVIVSSPSEELY-ADAVLQFRKVCEQFPK 391
A K H + + I NA ++ + + + + AD ++ K +
Sbjct: 161 LAAL--------PKSAHPSALAAIKEIYNAEDIDKAQIAVKAFEADFGAKYPKAVAKITD 212
Query: 392 FLKYVESTILEPLKKKIVKAWTNRVMHFGCTTTNGVESAHGTLKGYLEDSKGD------- 444
L +L K + W + TTN +ES T++ + +KG
Sbjct: 213 DL-----DVLLEFYKYPAEHWIH------LRTTNPIESTFATVRLRTKVTKGPGSRAAGL 261
Query: 445 ---------LAKGWKAINAMLTVQFTEIQATF 467
A W+A+NA V A F
Sbjct: 262 AMAYKLIDAAAARWRAVNAPHLVALVRAGAVF 293
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast
precursor (EC 1.3.1.33) (PCR) (NADPH-protochlorophyllide
oxidoreductase) (POR)
Length = 399
Score = 32.3 bits (72), Expect = 5.4
Identities = 23/75 (30%), Positives = 37/75 (48%), Gaps = 5/75 (6%)
Query: 603 PHTTSLTPPIQKLKTKG--AQKGAQKRKRSTLDDSSTTREPSF--WEHVDAQFPDSQASQ 658
P +L PP QK TKG +++ + KR + D S T+ + W + A F ++Q SQ
Sbjct: 319 PLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASF-ENQLSQ 377
Query: 659 TKPSLQKKKSVCVVN 673
+K + V V+
Sbjct: 378 EASDAEKARKVWEVS 392
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast
precursor (EC 1.3.1.33) (PCR A)
(NADPH-protochlorophyllide oxidoreductase A) (POR A)
Length = 405
Score = 32.0 bits (71), Expect = 7.0
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 603 PHTTSLTPPIQKLKTKG--AQKGAQKRKRSTLDDSSTTREPSF--WEHVDAQFPDSQASQ 658
P +L PP QK TKG ++ A KR + D S T+ + W A F ++Q SQ
Sbjct: 325 PLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASF-ENQLSQ 383
Query: 659 TKPSLQKKKSVCVVN 673
++K + V V+
Sbjct: 384 EASDVEKARRVWEVS 398
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,517,529
Number of Sequences: 164201
Number of extensions: 4387909
Number of successful extensions: 10324
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10315
Number of HSP's gapped (non-prelim): 20
length of query: 840
length of database: 59,974,054
effective HSP length: 119
effective length of query: 721
effective length of database: 40,434,135
effective search space: 29153011335
effective search space used: 29153011335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 70 (31.6 bits)
Medicago: description of AC138063.5