Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138017.12 + phase: 1 /pseudo
         (95 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PGL2_CHAOB (Q7M1E7) Polygalacturonase precursor (PG) (EC 3.2.1.1...    37  0.007
PGL2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.1...    33  0.12
PGL2_CRYJA (P43212) Polygalacturonase precursor (EC 3.2.1.15) (P...    32  0.28
BIOB_HAEIN (P44987) Biotin synthase (EC 2.8.1.6) (Biotin synthet...    28  5.2
ATE_RALSO (Q8XYZ0) Putative arginyl-tRNA--protein transferase (E...    28  5.2
YM68_YEAST (Q04991) Hypothetical transporter YMR221C                   27  6.8
SEB2_HUMAN (Q96T68) Probable histone-lysine N-methyltransferase,...    27  8.9
PASK_MOUSE (Q8CEE6) PAS domain containing serine/threonine-prote...    27  8.9
COR4_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)      27  8.9
AGSR_HUMAN (O00253) Agouti-related protein precursor                   27  8.9

>PGL2_CHAOB (Q7M1E7) Polygalacturonase precursor (PG) (EC 3.2.1.15)
           (Pectinase) (Major pollen allergen Cha o 2)
          Length = 514

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 20/84 (23%), Positives = 34/84 (39%), Gaps = 23/84 (27%)

Query: 16  MEENGSMLAEK----LQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYS 71
           M+EN    A+     + + S PP C+ +C+ C  C+   + + P+K Q            
Sbjct: 449 MDENKGACAKGDSTCISLSSSPPNCKNKCKGCQPCKPKLIIVHPNKPQ------------ 496

Query: 72  SRGDGLSNYKPISWKCKCGDYFFN 95
                  +Y P  W C C +  +N
Sbjct: 497 -------DYYPQKWVCSCHNKIYN 513


>PGL2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.15)
           (Pectinase) (Major pollen allergen Jun a 2)
          Length = 507

 Score = 33.1 bits (74), Expect = 0.12
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 21/76 (27%)

Query: 22  MLAEKL--QIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSN 79
           ++ EK+   + S PP C+ +C+ C  C+   + + P++ +                   +
Sbjct: 450 LMDEKMGASLNSSPPNCKNKCKGCQPCKPKLIIVHPNQPE-------------------D 490

Query: 80  YKPISWKCKCGDYFFN 95
           Y P  W C C +  +N
Sbjct: 491 YYPQRWVCSCHNKIYN 506


>PGL2_CRYJA (P43212) Polygalacturonase precursor (EC 3.2.1.15) (PG)
           (Pectinase) (Major pollen allergen Cry j 2) (Cry j II)
          Length = 514

 Score = 32.0 bits (71), Expect = 0.28
 Identities = 10/23 (43%), Positives = 15/23 (64%)

Query: 26  KLQIGSRPPKCERRCRSCVHCEA 48
           ++ +GSRPP C  +C  C  C+A
Sbjct: 463 RILLGSRPPNCTNKCHGCSPCKA 485


>BIOB_HAEIN (P44987) Biotin synthase (EC 2.8.1.6) (Biotin
          synthetase)
          Length = 333

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 20/52 (38%), Positives = 26/52 (49%), Gaps = 4/52 (7%)

Query: 22 MLAEKLQIGSRPPKCERRCRSCVHCEAV-QVP---IVPSKVQIHRSHYDSAA 69
          MLAEKLQI S  P       S    EA+ + P   +V    Q+HR H++  A
Sbjct: 1  MLAEKLQINSITPHPSVEYWSVCKVEALFETPFLELVYRATQVHRKHFNPRA 52


>ATE_RALSO (Q8XYZ0) Putative arginyl-tRNA--protein transferase (EC
          2.3.2.8) (R-transferase) (Arginyltransferase)
          Length = 257

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 34 PKCERRCRSCVHCEAVQVPIVPSKVQ 59
          P C+  C +C  C  V  P VPS+ Q
Sbjct: 64 PHCDD-CHACTPCRVVVAPFVPSRAQ 88


>YM68_YEAST (Q04991) Hypothetical transporter YMR221C
          Length = 504

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 12/55 (21%), Positives = 28/55 (50%)

Query: 3   RPISNLNEVAKNGMEENGSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSK 57
           + ++++ ++A  G++ENG ++      G  P + ER+    +  E   +P  P +
Sbjct: 212 KTVNHIAKIAVEGLDENGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQR 266


>SEB2_HUMAN (Q96T68) Probable histone-lysine N-methyltransferase, H3
           lysine-9 specific (EC 2.1.1.43) (Histone H3-K9
           methyltransferase) (H3-K9-HMTase) (SET domain bifurcated
           2) (Chronic lymphocytic leukemia deletion region gene 8
           protein)
          Length = 719

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 6/61 (9%)

Query: 1   AGRPISNLNEVAKNGMEENGSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQI 60
           +GR +S  N     G++ENG        I S+  K E  C  C      +V ++P  ++ 
Sbjct: 397 SGRLLSRANTEKSYGIDENGRDENTMKNIFSKKRKLEVACSDC------EVEVLPLGLET 450

Query: 61  H 61
           H
Sbjct: 451 H 451


>PASK_MOUSE (Q8CEE6) PAS domain containing serine/threonine-protein
            kinase (EC 2.7.1.37) (PAS-kinase) (PASKIN)
          Length = 1383

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 10   EVAKNGMEENGSMLAEKLQIGSRPPK------------CERRCRSCVHCEAVQVPIVP 55
            EV +    E+G + A  L+IGSR P               R  R   HC  ++ P +P
Sbjct: 1324 EVCRTNQPESGLLSAASLEIGSRSPSEMAQREGLCGPPAPRETRGDQHCLHLKDPSLP 1381


>COR4_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)
          Length = 262

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 21/79 (26%), Positives = 34/79 (42%), Gaps = 12/79 (15%)

Query: 6   SNLNEVAKNGMEENGSM--------LAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSK 57
           S+ +E  +  +++NG +        L EKLQ G  P   +       H   +  P  P+ 
Sbjct: 87  SSSDEEEEEVIDDNGEVIKRKKKKGLKEKLQ-GKLPGHKDTEGE---HVTGLPAPAAPAS 142

Query: 58  VQIHRSHYDSAAYSSRGDG 76
           VQ H  H+D+     + DG
Sbjct: 143 VQTHGGHHDTDVVVEKIDG 161


>AGSR_HUMAN (O00253) Agouti-related protein precursor
          Length = 132

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 10  EVAKNGMEENGSMLAEKLQIGSRPPKCERRC-RSCVHCEAVQVP 52
           E A+  + +    LAE L +  R P+  RRC R    C   QVP
Sbjct: 57  EQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVP 100


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,359,600
Number of Sequences: 164201
Number of extensions: 429624
Number of successful extensions: 919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 11
length of query: 95
length of database: 59,974,054
effective HSP length: 71
effective length of query: 24
effective length of database: 48,315,783
effective search space: 1159578792
effective search space used: 1159578792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)


Medicago: description of AC138017.12