BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137996.10 + phase: 0 /pseudo
(1594 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 482 e-135
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 461 e-129
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 164 2e-39
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 155 1e-36
YME4_YEAST (Q04711) Transposon Ty1 protein B 108 1e-22
YMU0_YEAST (Q04670) Transposon Ty1 protein B 108 2e-22
YMD9_YEAST (Q03434) Transposon Ty1 protein B 107 2e-22
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 107 2e-22
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 106 4e-22
YJZ9_YEAST (P47100) Transposon Ty1 protein B 105 8e-22
YJZ7_YEAST (P47098) Transposon Ty1 protein B 105 8e-22
YMT5_YEAST (Q04214) Transposon Ty1 protein B 105 1e-21
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 62 2e-08
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 60 5e-08
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 60 6e-08
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 54 3e-06
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 54 4e-06
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 2e-05
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 48 2e-04
SR40_YEAST (P32583) Suppressor protein SRP40 48 2e-04
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 482 bits (1240), Expect = e-135
Identities = 326/1072 (30%), Positives = 531/1072 (49%), Gaps = 55/1072 (5%)
Query: 545 CLRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIG---- 600
C+ + W +D+ S H T + LF D G VK G KI G G I
Sbjct: 284 CMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTN 343
Query: 601 -NSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENV 659
++ + +V V L+ NL+S +GY+ F+ L + KG +
Sbjct: 344 VGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTK--GSLVIAKGVARGTL 401
Query: 660 YKINFSDLADQKVVCLLSMNDKKW-----VWHKRLGHANWRLISKISKLQLVKGLPNIDY 714
Y+ N +C +N + +WHKR+GH + + + ++K L+
Sbjct: 402 YRTNAE-------ICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTV 454
Query: 715 HSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHI---DLFGPVNTASLYGSKYGLVIV 771
C C GK + SF++ S+ R L +L + D+ GP+ S+ G+KY + +
Sbjct: 455 KP---CDYCLFGKQHRVSFQT----SSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFI 507
Query: 772 DDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKH 831
DD SR WV +K+KD +VF F ++ E K+ ++RSD GGE+ + FE +C H
Sbjct: 508 DDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSH 567
Query: 832 GILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIR 891
GI HE + P TPQ NGV ER NRT+ E R+M+ L K FW EAV T+CY+ NR
Sbjct: 568 GIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSV 627
Query: 892 PMLEKTTYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYR 951
P+ + ++ + + S+ FGC + K+ K D K+ IF+GY + YR
Sbjct: 628 PLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYR 687
Query: 952 VYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESS 1011
+++ + V S V F + E + + G + PS S T ES+
Sbjct: 688 LWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTI----PSTSNNPTSAEST 743
Query: 1012 PEAEYNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSH 1071
+ +P ++ E + ++V P + P + + PR
Sbjct: 744 TDEVSEQGEQPGEVIEQ---GEQLDEGVEEVEHPTQGEEQHQP----LRRSERPRVESRR 796
Query: 1072 FRQEESLIGLLSIIEPKTVEEALS---DDGWILAMQEELINFKGMMCGIWYPYPFRRTLL 1128
+ E ++ + EP++++E LS + + AMQEE+ + + P + L
Sbjct: 797 YPSTEYVL-ISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPL 855
Query: 1129 EQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHG 1188
+ K K K V +G+ Q++GID+ E F+PV ++ +IR +LS A +
Sbjct: 856 KCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLD 915
Query: 1189 IILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLS 1248
+ + Q+DVK+AFL+G +EEE+Y++QP GFE V KL KSLYGLKQAPR WY +
Sbjct: 916 LEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFD 975
Query: 1249 NFLIKNDFERGQVDTTL-FRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEM 1307
+F+ + + D + F+R + + +I+ +YVDD++ + L + F+M
Sbjct: 976 SFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDM 1035
Query: 1308 SMMGELKFFLGIQI--NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKED 1365
+G + LG++I ++ +++ Q KY + +L++F +++ K ++TP+ LSK+
Sbjct: 1036 KDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKM 1095
Query: 1366 TGTVVDQK------LYRGMIGSLLY-LTASRPAILFSVCLCARFQSDPRESHLTAVKRIF 1418
T V++K Y +GSL+Y + +RP I +V + +RF +P + H AVK I
Sbjct: 1096 CPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWIL 1155
Query: 1419 RYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQAT 1478
RYL+GTT L + S D L G+ DAD AGD RKS++G ISW SK Q
Sbjct: 1156 RYLRGTTGDCLCFGGS-DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214
Query: 1479 IAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAK 1538
+A+ST EAEYI+A +++W+K L++ ++ +YCD+ +AI LSKN + H+R K
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTK 1274
Query: 1539 HIEIKHHFIRDYVQKGILDIQFIDIEHQWADIFTKPLSVERFDFIKKNLNMH 1590
HI++++H+IR+ V L + I AD+ TK + +F+ K+ + MH
Sbjct: 1275 HIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMH 1326
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 461 bits (1187), Expect = e-129
Identities = 332/1132 (29%), Positives = 550/1132 (48%), Gaps = 121/1132 (10%)
Query: 557 LDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIG------NSSISINNVW 610
LDSG S H+ +++L+ T +++ +K + G+ I G + I++ +V
Sbjct: 291 LDSGASDHLINDESLY-TDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVL 349
Query: 611 LVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQ 670
NL+S+ + + G + F K+ T ++K+ + + NV INF
Sbjct: 350 FCKEAAGNLMSVKRLQEAGMSIEFDKSGVT-ISKNGLMVVKNSGMLNNVPVINFQ----- 403
Query: 671 KVVCLLSMNDKKW----VWHKRLGHANWRLISKISKLQLVKG---LPNIDYHSDALCGAC 723
S+N K +WH+R GH + + +I + + L N++ + +C C
Sbjct: 404 ----AYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-ICEPC 458
Query: 724 QKGKIVKSSFKS-KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKF 782
GK + FK KD RPL ++H D+ GP+ +L Y ++ VD ++ +
Sbjct: 459 LNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYL 518
Query: 783 IKSKDYACEVFSSFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRT 842
IK K +F F + ++ LK++ + D G E+ + FC K GI + + P T
Sbjct: 519 IKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHT 578
Query: 843 PQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLE--KTTYE 900
PQ NGV ER RT+ E ARTM+ L K FW EAV T+ Y+ NRI R +++ KT YE
Sbjct: 579 PQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYE 638
Query: 901 LFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERS------------K 948
++ ++P + + FG T Y+ + K+ KFD K+ + IF+GY
Sbjct: 639 MWHNKKPYLKHLRVFGATVYV-HIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIV 697
Query: 949 AYRVYNSETQCVEESMHVKF------DDREPGSKT----------------SEQSESNAG 986
A V ET V S VKF D +E +K S++ ++
Sbjct: 698 ARDVVVDETNMVN-SRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQF 756
Query: 987 TTDSEDASESDQPSDSEKYTEVESSPEAE-------YNSEAEPSPKVQNESAS---EDFQ 1036
DS+++ + P+DS K + E E++ E + NES +D
Sbjct: 757 LKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHL 816
Query: 1037 DNTQQVIQPKFKHKSSHPEEL---------------IIGSKDSPRRTRSHFRQEESLIGL 1081
+ ++ P +S E L II + +T+ E L
Sbjct: 817 NESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSL 876
Query: 1082 LSII---------EPKTVEEALSDD---GWILAMQEELINFKGMMCGIWYPYPFRRTLLE 1129
++ P + +E D W A+ EL K P + +++
Sbjct: 877 NKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVD 936
Query: 1130 QNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGI 1189
K VA+G++Q+ IDY ETFAPVAR+ + R +LS I + +
Sbjct: 937 SRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNL 996
Query: 1190 ILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSN 1249
++QMDVK+AFLNG ++EE+Y++ P G + D+V KL K++YGLKQA R W++
Sbjct: 997 KVHQMDVKTAFLNGTLKEEIYMRLPQGIS--CNSDNVCKLNKAIYGLKQAARCWFEVFEQ 1054
Query: 1250 FLIKNDFERGQVDTTLF---RRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFE 1306
L + +F VD ++ + + ++I ++ +YVDD++ + + + F + + ++F
Sbjct: 1055 ALKECEFVNSSVDRCIYILDKGNINENIYVL-LYVDDVVIATGDMTRMNNFKRYLMEKFR 1113
Query: 1307 MSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTL----S 1362
M+ + E+K F+GI+I ++ +Y+ Q+ Y K++L KF +E+C ++TP+ S
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS 1173
Query: 1363 KEDTGTVVDQKLYRGMIGSLLY-LTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYL 1421
ED T R +IG L+Y + +RP + +V + +R+ S +KR+ RYL
Sbjct: 1174 DEDCNTPC-----RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYL 1228
Query: 1422 KGTTNLGLLYRKSLDY--KLIGFCDADYAGDRIERKSTSGNC-QFLGENLISWASKRQAT 1478
KGT ++ L+++K+L + K+IG+ D+D+AG I+RKST+G + NLI W +KRQ +
Sbjct: 1229 KGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNS 1288
Query: 1479 IAMSTAEAEYISAASCCTQLLWMKHQLEDYQIN-ANSIPIYCDNTAAICLSKNPILHSRA 1537
+A S+ EAEY++ + LW+K L I N I IY DN I ++ NP H RA
Sbjct: 1289 VAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRA 1348
Query: 1538 KHIEIKHHFIRDYVQKGILDIQFIDIEHQWADIFTKPLSVERFDFIKKNLNM 1589
KHI+IK+HF R+ VQ ++ +++I E+Q ADIFTKPL RF ++ L +
Sbjct: 1349 KHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 164 bits (415), Expect = 2e-39
Identities = 95/308 (30%), Positives = 166/308 (53%), Gaps = 3/308 (0%)
Query: 1194 MDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1253
MDV +AFLN ++E +YVKQPPGF + ++PD+V++L +YGLKQAP W + ++N L K
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1254 NDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGEL 1313
F R + + L+ R+ + + +YVDD++ + + + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1314 KFFLGIQINQSKEG-VYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQ 1372
FLG+ I+QS G + + Y + + ++ K+ TP+ + L + + + D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1373 KLYRGMIGSLLY-LTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY 1431
Y+ ++G LL+ RP I + V L +RF +PR HL + +R+ RYL T ++ L Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1432 RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKR-QATIAMSTAEAEYIS 1490
R L +CDA + ST G L ++W+SK+ + I + + EAEYI+
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1491 AASCCTQL 1498
A+ ++
Sbjct: 301 ASETVMEI 308
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 155 bits (391), Expect = 1e-36
Identities = 81/222 (36%), Positives = 127/222 (56%), Gaps = 1/222 (0%)
Query: 1279 IYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1338
+YVDDI+ ++ +L + F M +G + +FLGIQI G+++ QTKY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1339 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPAILFSVCL 1398
+L + DCK M+TP+ P S T D +R ++G+L YLT +RP I ++V +
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 1399 CARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTS 1458
+ +P + +KR+ RY+KGT GL K+ + FCD+D+AG R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 1459 GNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLW 1500
G C FLG N+ISW++KRQ T++ S+ E EY + A +L W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 108 bits (270), Expect = 1e-22
Identities = 139/613 (22%), Positives = 263/613 (42%), Gaps = 61/613 (9%)
Query: 1001 DSEKYTEVESSPEAEYNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIG 1060
DS YT + S + ++E E KV ++ + + ++P K H +
Sbjct: 741 DSNAYTTINSKKRSLEDNETEI--KVSRDT----WNTKNMRSLEPPRSKKRIHLIAAVKA 794
Query: 1061 SKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELINFKGMMCGIWYP 1120
K S + R+ R +E+ I K ++E + +I A +E+ M
Sbjct: 795 VK-SIKPIRTTLRYDEA------ITYNKDIKEK---EKYIEAYHKEVNQLLKMNTWDTDK 844
Query: 1121 YPFRRTLLEQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLL 1180
Y R+ + + + N+++ K FVA+G Q + + A+
Sbjct: 845 YYDRKEIDPKRVINSMFIFNRKRDGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTS 904
Query: 1181 LSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAP 1240
LS A+++ + Q+D+ SA+L I+EE+Y++ PP L D + +LKKSLYGLKQ+
Sbjct: 905 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSG 961
Query: 1241 RAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKL 1300
WY+ + ++LIK + G + + K + + ++VDD+I S + + K
Sbjct: 962 ANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITT 1018
Query: 1301 MQDEFEMSMM------GELKF-FLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNT 1353
++ +++ ++ E+++ LG++I + KY K ++ E +N
Sbjct: 1019 LKKQYDTKIINLGESDNEIQYDILGLEIKYQR-------GKYMKLGMENSLTEKIPKLNV 1071
Query: 1354 PMHP--TCTLSKEDTGTVVDQ------------KLY--RGMIGSLLYLTAS-RPAILFSV 1396
P++P + G +DQ K++ + +IG Y+ R +L+ +
Sbjct: 1072 PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1131
Query: 1397 CLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSL----DYKLIGFCDADYAGDRI 1452
A+ P L + +++ T + L++ K+ D KL+ DA Y G++
Sbjct: 1132 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQP 1190
Query: 1453 ERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINA 1512
KS GN L +I S + + ST EAE + + L + H +++
Sbjct: 1191 YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKP 1250
Query: 1513 NSIPIYCD--NTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADI 1570
+ + D +T +I +S N R + K +RD V L + +I+ + AD+
Sbjct: 1251 ITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADV 1309
Query: 1571 FTKPLSVERFDFI 1583
TKPL ++ F +
Sbjct: 1310 MTKPLPIKTFKLL 1322
Score = 91.7 bits (226), Expect = 1e-17
Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 31/359 (8%)
Query: 686 HKRLGHANWRLISKISKLQLVKGLPN--------IDYHS-DALCGACQKGKIVKSSFKSK 736
H+ L HAN + I K + IDY D L G K + +K S
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 737 DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI--KSKDYACEVFS 794
++ P + LH D+FGPV+ Y + D+ +++ WV + + +D +VF+
Sbjct: 232 Q--NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 289
Query: 795 SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 854
+ I+++ + +L ++ D G E+ N F EK+GI +++ + +GV ER NR
Sbjct: 290 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNR 349
Query: 855 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQ 914
TL + RT + + L H W A+ S ++N + P +K+ + +IS
Sbjct: 350 TLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL-ASPKSKKSARQHAGLAGLDISTLLP 408
Query: 915 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY-NSETQCVEESMHVKFDDREP 973
FG I+N + K + G L S S Y +Y S + V+ + +V +E
Sbjct: 409 FG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKES 467
Query: 974 G---------------SKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYN 1017
++ + +S + + + + + + SD + +++E PE N
Sbjct: 468 RLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRN 526
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 108 bits (269), Expect = 2e-22
Identities = 140/618 (22%), Positives = 265/618 (42%), Gaps = 71/618 (11%)
Query: 1001 DSEKYTEVESSPEAEYNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIG 1060
DS YT + S + ++E E KV ++ + + ++P K H +
Sbjct: 741 DSNAYTTINSKKRSLEDNETEI--KVSRDT----WNTKNMRSLEPPRSKKRIHLIAAVKA 794
Query: 1061 SKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELINFKGMMCGIWYP 1120
K S + R+ R +E+ I K ++E + +I A +E+ M
Sbjct: 795 VK-SIKPIRTTLRYDEA------ITYNKDIKEK---EKYIQAYHKEVNQLLKMKTWDTDR 844
Query: 1121 YPFRRTLLEQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLE----- 1175
Y R+ + + + N+++ K FVA+G I + +T+ P +
Sbjct: 845 YYDRKEIDPKRVINSMFIFNRKRDGTHKARFVARG-----DIQHPDTYDPGMQSNTVHHY 899
Query: 1176 AIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYG 1235
A+ LS A+++ + Q+D+ SA+L I+EE+Y++ PP L D + +LKKSLYG
Sbjct: 900 ALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYG 956
Query: 1236 LKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK 1295
LKQ+ WY+ + ++LIK + G + + K + + ++VDD+I S + + K
Sbjct: 957 LKQSGANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANK 1013
Query: 1296 *FSKLMQDEFEMSMM------GELKF-FLGIQINQSKEGVYVHQTKYTKELLKKFKLEDC 1348
++ +++ ++ E+++ LG++I + KY K ++ E
Sbjct: 1014 KIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQR-------GKYMKLGMENSLTEKI 1066
Query: 1349 KVMNTPMHP--TCTLSKEDTGTVVDQK--------------LYRGMIGSLLYLTAS-RPA 1391
+N P++P + G +DQ+ + +IG Y+ R
Sbjct: 1067 PKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFD 1126
Query: 1392 ILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY----KLIGFCDADY 1447
+L+ + A+ P + L + +++ T + L++ KS KL+ DA Y
Sbjct: 1127 LLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY 1186
Query: 1448 AGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLED 1507
G++ KS GN L +I S + + ST EAE + + L + H +++
Sbjct: 1187 -GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQE 1245
Query: 1508 YQINANSIPIYCD--NTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIEH 1565
+ + D +T +I +S N R + K +RD V L + +I+ +
Sbjct: 1246 LNKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKK 1304
Query: 1566 QWADIFTKPLSVERFDFI 1583
AD+ TKPL ++ F +
Sbjct: 1305 NIADVMTKPLPIKTFKLL 1322
Score = 91.7 bits (226), Expect = 1e-17
Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 31/359 (8%)
Query: 686 HKRLGHANWRLISKISKLQLVKGLPN--------IDYHS-DALCGACQKGKIVKSSFKSK 736
H+ L HAN + I K + IDY D L G K + +K S
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 737 DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI--KSKDYACEVFS 794
++ P + LH D+FGPV+ Y + D+ +++ WV + + +D +VF+
Sbjct: 232 Q--NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 289
Query: 795 SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 854
+ I+++ + +L ++ D G E+ N F EK+GI +++ + +GV ER NR
Sbjct: 290 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNR 349
Query: 855 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQ 914
TL + RT + + L H W A+ S ++N + P +K+ + +IS
Sbjct: 350 TLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL-ASPKSKKSARQHAGLAGLDISTLLP 408
Query: 915 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY-NSETQCVEESMHVKFDDREP 973
FG I+N + K + G L S S Y +Y S + V+ + +V +E
Sbjct: 409 FG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKES 467
Query: 974 G---------------SKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYN 1017
++ + +S + + + + + + SD + +++E PE N
Sbjct: 468 RLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRN 526
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 107 bits (268), Expect = 2e-22
Identities = 136/612 (22%), Positives = 260/612 (42%), Gaps = 59/612 (9%)
Query: 1001 DSEKYTEVESSPEAEYNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIG 1060
DS YT + S + ++E E KV ++ + + ++P K H +
Sbjct: 741 DSNAYTTINSKKRSLEDNETEI--KVSRDT----WNTKNMRSLEPPRSKKRIHLIAAVKA 794
Query: 1061 SKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELINFKGMMCGIWYP 1120
K S + R+ R +E++ I E + EA + +L+ K +Y
Sbjct: 795 VK-SIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKE------VNQLLKMKTWDTDEYYD 847
Query: 1121 YPFRRTLLEQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLL 1180
R+ + + + NK++ K FVA+G Q + + A+
Sbjct: 848 ---RKEIDPKRVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTS 904
Query: 1181 LSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAP 1240
LS A+++ + Q+D+ SA+L I+EE+Y++ PP L D + +LKKSLYGLKQ+
Sbjct: 905 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSG 961
Query: 1241 RAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKL 1300
WY+ + ++LIK + G + + K + + ++VDD+I S + + K
Sbjct: 962 ANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITT 1018
Query: 1301 MQDEFEMSMM------GELKF-FLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNT 1353
++ +++ ++ E+++ LG++I + KY K ++ E +N
Sbjct: 1019 LKKQYDTKIINLGESDNEIQYDILGLEIKYQR-------GKYMKLGMENSLTEKIPKLNV 1071
Query: 1354 PMHP--TCTLSKEDTGTVVDQ------------KLY--RGMIGSLLYLTAS-RPAILFSV 1396
P++P + G +DQ K++ + +IG Y+ R +L+ +
Sbjct: 1072 PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1131
Query: 1397 CLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSL----DYKLIGFCDADYAGDRI 1452
A+ P L + +++ T + L++ K+ D KL+ DA Y G++
Sbjct: 1132 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQP 1190
Query: 1453 ERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINA 1512
KS GN L +I S + + ST EAE + + L + + +++
Sbjct: 1191 YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKP 1250
Query: 1513 NSIPIYCDNTAAICLSKNPILHS-RAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADIF 1571
+ D+ + I + K+ R + K +RD V L + +I+ + AD+
Sbjct: 1251 IIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVM 1310
Query: 1572 TKPLSVERFDFI 1583
TKPL ++ F +
Sbjct: 1311 TKPLPIKTFKLL 1322
Score = 91.7 bits (226), Expect = 1e-17
Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 31/359 (8%)
Query: 686 HKRLGHANWRLISKISKLQLVKGLPN--------IDYHS-DALCGACQKGKIVKSSFKSK 736
H+ L HAN + I K + IDY D L G K + +K S
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 737 DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI--KSKDYACEVFS 794
++ P + LH D+FGPV+ Y + D+ +++ WV + + +D +VF+
Sbjct: 232 Q--NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 289
Query: 795 SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 854
+ I+++ + +L ++ D G E+ N F EK+GI +++ + +GV ER NR
Sbjct: 290 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNR 349
Query: 855 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQ 914
TL + RT + + L H W A+ S ++N + P +K+ + +IS
Sbjct: 350 TLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL-ASPKSKKSARQHAGLAGLDISTLLP 408
Query: 915 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY-NSETQCVEESMHVKFDDREP 973
FG I+N + K + G L S S Y +Y S + V+ + +V +E
Sbjct: 409 FG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKES 467
Query: 974 G---------------SKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYN 1017
++ + +S + + + + + + SD + +++E PE N
Sbjct: 468 RLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRN 526
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 107 bits (268), Expect = 2e-22
Identities = 142/668 (21%), Positives = 280/668 (41%), Gaps = 68/668 (10%)
Query: 969 DDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSPKVQN 1028
D P ++S+ + N S +D D ++ + + ++ P + +
Sbjct: 1112 DTDPPEYRSSDHATPNIMPDKSSKNVTADSILDDLPLPDLTHQSPTDTSDVSKDIPHIHS 1171
Query: 1029 ESASEDF--QDNTQQVIQPKFKHKSSHPEELIIG-SKDS----------PRRTRSHFRQE 1075
+ D++ + K K +S E I S+D+ P R++
Sbjct: 1172 RQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEIEVSRDTWNNKNMRSLEPPRSKKRINLI 1231
Query: 1076 ESLIGLLSIIEPKTV---EEALS-------DDGWILAMQEELINFKGMMCGIWYPYPFRR 1125
++ G+ SI +T +EA++ D ++ A +E+ M Y R
Sbjct: 1232 AAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRN 1291
Query: 1126 TLLEQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAI 1185
+ + + NK++ K FVA+G Q ++ + A+ LS A+
Sbjct: 1292 DIDPKKVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIAL 1351
Query: 1186 NHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYD 1245
++ + Q+D+ SA+L I+EE+Y++ PP L D + +L+KSLYGLKQ+ WY+
Sbjct: 1352 DNDYYITQLDISSAYLYADIKEELYIRPPP---HLGLNDKLLRLRKSLYGLKQSGANWYE 1408
Query: 1246 RLSNFLIK-NDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDE 1304
+ ++LI D + + + +F K + + ++VDD+I S + + K ++ +
Sbjct: 1409 TIKSYLINCCDMQEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQ 1464
Query: 1305 FEMSMM------GELKF-FLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP 1357
++ ++ E+++ LG++I + +KY K ++K E +N P++P
Sbjct: 1465 YDTKIINLGESDNEIQYDILGLEIKYQR-------SKYMKLGMEKSLTEKLPKLNVPLNP 1517
Query: 1358 TCTLSKE--DTGTVVDQ------------KLY--RGMIGSLLYLTAS-RPAILFSVCLCA 1400
+ G +DQ K++ + +IG Y+ R +L+ + A
Sbjct: 1518 KGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLA 1577
Query: 1401 RFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSL----DYKLIGFCDADYAGDRIERKS 1456
+ P L + +++ T + L++ K+ D KL+ DA Y G++ KS
Sbjct: 1578 QHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKS 1636
Query: 1457 TSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIP 1516
GN L +I S + + ST EAE + + L + H +++
Sbjct: 1637 QIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKG 1696
Query: 1517 IYCDNTAAICLSKNPILHS-RAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADIFTKPL 1575
+ D+ + I + K+ R + K +RD V L + +I+ + AD+ TKPL
Sbjct: 1697 LLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPL 1756
Query: 1576 SVERFDFI 1583
++ F +
Sbjct: 1757 PIKTFKLL 1764
Score = 102 bits (255), Expect = 6e-21
Identities = 93/357 (26%), Positives = 156/357 (43%), Gaps = 29/357 (8%)
Query: 686 HKRLGHANWRLISKISKLQLVKGLPNIDYH---------SDALCGACQKGKIVKSSFKSK 736
H+ LGHAN+R I K K V L D D L G K + VK S
Sbjct: 595 HRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKY 654
Query: 737 DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI--KSKDYACEVFS 794
+ P + LH D+FGPV+ Y + D+ +R+ WV + + ++ VF+
Sbjct: 655 Q--ESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFT 712
Query: 795 SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 854
S I+++ ++L ++ D G E+ N+ F GI +++ + +GV ER NR
Sbjct: 713 SILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNR 772
Query: 855 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQ 914
TL RT++H + L H W AV S I+N + + P +K+ + +I+
Sbjct: 773 TLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDKSARQHAGLAGLDITTILP 831
Query: 915 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY-NSETQCVEESMHVKFDDREP 973
FG I+N + K + G L S S Y +Y S + V+ + +V D++
Sbjct: 832 FG-QPVIVNNHNPDSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQ- 889
Query: 974 GSKTSE--------QSESNAGTTDSE---DASESDQPSDSEKYTEVESSPEAEYNSE 1019
SK + + N T ++ + +E++Q D ++ + E E NS+
Sbjct: 890 -SKLDQFNYDTLTFDDDLNRLTAHNQSFIEQNETEQSYDQNTESDHDYQSEIEINSD 945
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 106 bits (265), Expect = 4e-22
Identities = 144/639 (22%), Positives = 271/639 (41%), Gaps = 50/639 (7%)
Query: 978 SEQSESNAGTTDSEDASE---SDQPSDSEKYTEVESSPEAEYNSEAEPSP-KVQNESASE 1033
S+Q++ + D + E +D+ ++ T V SP E N EA SP + N+SA
Sbjct: 1157 SDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNV--SPRLEQNIEASGSPVQTVNKSAFL 1214
Query: 1034 DFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTV--E 1091
+ + ++ + + + +H ++ +D R ++ + + +S + + +
Sbjct: 1215 NKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKKNRVKLIPDNMETVSAPKIRAIYYN 1274
Query: 1092 EALSDDG-------WILAMQEELINFKGMMCGIWYPYPFRRTLLEQNGYSKTS*M-NKEK 1143
EA+S + + A +EL N K M + R+ + N T+ + K++
Sbjct: 1275 EAISKNPDLKEKHEYKQAYHKELQNLKDMKV-FDVDVKYSRSEIPDNLIVPTNTIFTKKR 1333
Query: 1144 *PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNG 1203
K V +G +Q Y+ I++ L A N + + +D+ AFL
Sbjct: 1334 NGIYKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYA 1392
Query: 1204 VIEEEVYVKQPPGFEDLKHPDH-VYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVD 1262
+EEE+Y+ P H V KL K+LYGLKQ+P+ W D L +L +
Sbjct: 1393 KLEEEIYIPHP-------HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYT 1445
Query: 1263 TTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGEL------KFF 1316
L++ K L++ +YVDD + ++N F ++ FE+ + G L
Sbjct: 1446 PGLYQTEDKN--LMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDI 1503
Query: 1317 LGIQINQSKEGVYVHQT--KYTKELLKKFKLEDCKVMNTPMHPTCTLS---KEDTGTVVD 1371
LG+ + +K + T + + KK+ E K+ + + T K+D + +
Sbjct: 1504 LGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSE 1563
Query: 1372 QKLYRG------MIGSLLYLT-ASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGT 1424
++ +G ++G L Y+ R I F+V AR + P E + +I +YL
Sbjct: 1564 EEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRY 1623
Query: 1425 TNLGLLYRK--SLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMS 1482
++G+ Y + + D K+I DA G + +S G + G N+ + S + +S
Sbjct: 1624 KDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVS 1682
Query: 1483 TAEAEYISAASCCTQLLWMKHQLEDY-QINANSIPIYCDNTAAICLSKNPILHSRAKHIE 1541
+ EAE + +K L++ + + N I + D+ AI + K
Sbjct: 1683 STEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTW 1742
Query: 1542 IKHHFIRDYVQKGILDIQFIDIEHQWADIFTKPLSVERF 1580
IK I++ +++ + + I + AD+ TKP+S F
Sbjct: 1743 IKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDF 1781
Score = 78.6 bits (192), Expect = 1e-13
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 6/207 (2%)
Query: 686 HKRLGHANWRLI-SKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTS-- 742
HKR+GH + I + I + L I ++ C C+ K K + + + + S
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 743 -RPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRW--TWVKFIKSKDYACEVFSSFCTQ 799
P +D+FGPV++++ +Y L++VD+ +R+ T F K+ +
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 800 IQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEM 859
++++ + K+ ++ SD G EF N+ E + GI H +S + NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 860 ARTMIHENNLAKHFWAEAVNTSCYIQN 886
A T++ ++NL FW AV ++ I+N
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRN 768
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 105 bits (263), Expect = 8e-22
Identities = 136/613 (22%), Positives = 261/613 (42%), Gaps = 61/613 (9%)
Query: 1001 DSEKYTEVESSPEAEYNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIG 1060
DS YT + S + ++E E KV ++ + + ++P K H +
Sbjct: 1168 DSNAYTTINSKKRSLEDNETEI--KVSRDT----WNTKNMRSLEPPRSKKRIHLIAAVKA 1221
Query: 1061 SKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELINFKGMMCGIWYP 1120
K S + R+ R +E++ I E + EA + +L+ K +Y
Sbjct: 1222 VK-SIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKE------VNQLLKMKTWDTDEYYD 1274
Query: 1121 YPFRRTLLEQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLL 1180
R+ + + + NK++ K FVA+G Q + + A+
Sbjct: 1275 ---RKEIDPKRVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTS 1331
Query: 1181 LSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAP 1240
LS A+++ + Q+D+ SA+L I+EE+Y++ PP L D + +LKKSLYGLKQ+
Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSG 1388
Query: 1241 RAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKL 1300
WY+ + ++LI+ + G + + K + + ++VDD++ S N + K +
Sbjct: 1389 ANWYETIKSYLIQ---QCGMEEVRGWSCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEK 1445
Query: 1301 MQDEFEMSMMG------ELKF-FLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNT 1353
++ +++ ++ E+++ LG++I + KY K ++ E +N
Sbjct: 1446 LKMQYDTKIINLGESDEEIQYDILGLEIKYQR-------GKYMKLGMENSLTEKIPKLNV 1498
Query: 1354 PMHP--TCTLSKEDTGTVVDQK--------------LYRGMIGSLLYLTAS-RPAILFSV 1396
P++P + G +DQ+ + +IG Y+ R +L+ +
Sbjct: 1499 PLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYI 1558
Query: 1397 CLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY----KLIGFCDADYAGDRI 1452
A+ P + L + +++ T + L++ KS KL+ DA Y G++
Sbjct: 1559 NTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQP 1617
Query: 1453 ERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINA 1512
KS GN L +I S + + ST EAE + + L + + +++
Sbjct: 1618 YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKP 1677
Query: 1513 NSIPIYCD--NTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADI 1570
+ + D +T +I +S N R + K +RD V L + +I+ + AD+
Sbjct: 1678 ITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADV 1736
Query: 1571 FTKPLSVERFDFI 1583
TKPL ++ F +
Sbjct: 1737 MTKPLPIKTFKLL 1749
Score = 91.7 bits (226), Expect = 1e-17
Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 31/359 (8%)
Query: 686 HKRLGHANWRLISKISKLQLVKGLPN--------IDYHS-DALCGACQKGKIVKSSFKSK 736
H+ L HAN + I K + IDY D L G K + +K S
Sbjct: 599 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658
Query: 737 DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI--KSKDYACEVFS 794
++ P + LH D+FGPV+ Y + D+ +++ WV + + +D +VF+
Sbjct: 659 Q--NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 716
Query: 795 SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 854
+ I+++ + +L ++ D G E+ N F EK+GI +++ + +GV ER NR
Sbjct: 717 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNR 776
Query: 855 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQ 914
TL + RT + + L H W A+ S ++N + P +K+ + +IS
Sbjct: 777 TLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL-ASPKSKKSARQHAGLAGLDISTLLP 835
Query: 915 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY-NSETQCVEESMHVKFDDREP 973
FG I+N + K + G L S S Y +Y S + V+ + +V +E
Sbjct: 836 FG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKES 894
Query: 974 G---------------SKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYN 1017
++ + +S + + + + + + SD + +++E PE N
Sbjct: 895 RLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRN 953
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 105 bits (263), Expect = 8e-22
Identities = 136/612 (22%), Positives = 259/612 (42%), Gaps = 59/612 (9%)
Query: 1001 DSEKYTEVESSPEAEYNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIG 1060
DS YT + S + ++E E KV ++ + + ++P K H +
Sbjct: 1168 DSNAYTTINSKKRSLEDNETEI--KVSRDT----WNTKNMRSLEPPRSKKRIHLIAAVKA 1221
Query: 1061 SKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELINFKGMMCGIWYP 1120
K S + R+ R +E++ I E + EA + +L+ K +Y
Sbjct: 1222 VK-SIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKE------VNQLLKMKTWDTDEYYD 1274
Query: 1121 YPFRRTLLEQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLL 1180
R+ + + + NK++ K FVA+G Q T + A+
Sbjct: 1275 ---RKEIDPKRVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDTGMQSNTVHHYALMTS 1331
Query: 1181 LSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAP 1240
LS A+++ + Q+D+ SA+L I+EE+Y++ PP L D + +LKKS YGLKQ+
Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSHYGLKQSG 1388
Query: 1241 RAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKL 1300
WY+ + ++LIK + G + + K + + ++VDD+I S + + K
Sbjct: 1389 ANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITT 1445
Query: 1301 MQDEFEMSMM------GELKF-FLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNT 1353
++ +++ ++ E+++ LG++I + KY K ++ E +N
Sbjct: 1446 LKKQYDTKIINLGESDNEIQYDILGLEIKYQR-------GKYMKLGMENSLTEKIPKLNV 1498
Query: 1354 PMHP--TCTLSKEDTGTVVDQ------------KLY--RGMIGSLLYLTAS-RPAILFSV 1396
P++P + G +DQ K++ + +IG Y+ R +L+ +
Sbjct: 1499 PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1558
Query: 1397 CLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSL----DYKLIGFCDADYAGDRI 1452
A+ P L + +++ T + L++ K+ D KL+ DA Y G++
Sbjct: 1559 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQP 1617
Query: 1453 ERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINA 1512
KS GN L +I S + + ST EAE + + L + + +++
Sbjct: 1618 YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKP 1677
Query: 1513 NSIPIYCDNTAAICLSKNPILHS-RAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADIF 1571
+ D+ + I + K+ R + K +RD V L + +I+ + AD+
Sbjct: 1678 IIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVM 1737
Query: 1572 TKPLSVERFDFI 1583
TKPL ++ F +
Sbjct: 1738 TKPLPIKTFKLL 1749
Score = 92.8 bits (229), Expect = 7e-18
Identities = 84/359 (23%), Positives = 155/359 (42%), Gaps = 31/359 (8%)
Query: 686 HKRLGHANWRLISKISKLQLVKGLPN--------IDYHS-DALCGACQKGKIVKSSFKSK 736
H+ L HAN + I K + IDY D L G K + +K S
Sbjct: 599 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658
Query: 737 DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI--KSKDYACEVFS 794
++ P + LH D+FGPV+ Y + D+ +++ WV + + +D +VF+
Sbjct: 659 Q--NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 716
Query: 795 SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 854
+ I+++ + +L ++ D G E+ N F EK+GI +++ + +GV ER NR
Sbjct: 717 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNR 776
Query: 855 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQ 914
TL + RT + + L H W A+ S ++N + P +K+ + +IS
Sbjct: 777 TLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL-ASPKSKKSARQHAGLAGLDISTLLP 835
Query: 915 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY-NSETQCVEESMHVKFDDREP 973
FG I+N + K + G L S S Y +Y S + V+ + +V +E
Sbjct: 836 FG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKES 894
Query: 974 G---------------SKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYN 1017
++ + +S + + +++++ + SD + +++E PE N
Sbjct: 895 RLDQFNYDALTFDEDLNRLTASYQSFIASNEIQESNDLNIESDHDFQSDIELHPEQPRN 953
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 105 bits (261), Expect = 1e-21
Identities = 139/642 (21%), Positives = 269/642 (41%), Gaps = 61/642 (9%)
Query: 972 EPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSPKVQNESA 1031
EP ++ S+ + + S DS YT + S + ++E E KV ++
Sbjct: 712 EPPTELSDSFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEI--KVSRDT- 768
Query: 1032 SEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVE 1091
+ + ++P K H + K S + R+ R +E++ I E +
Sbjct: 769 ---WNTKNMRSLEPPRSKKRIHLIAAVKAVK-SIKPIRTTLRYDEAITYNKDIKEKEKYI 824
Query: 1092 EALSDDGWILAMQEELINFKGMMCGIWYPYPFRRTLLEQNGYSKTS*MNKEK*PETKPDF 1151
EA + +L+ K +Y R+ + + + N+++ K F
Sbjct: 825 EAYHKE------VNQLLKMKTWDTDKYYD---RKEIDPKRVINSMFIFNRKRDGTHKARF 875
Query: 1152 VAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYV 1211
VA+G Q + + A+ LS A+++ + Q+D+ SA+L I+EE+Y+
Sbjct: 876 VARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYI 935
Query: 1212 KQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLK 1271
+ PP L D + +LKKSLYGLKQ+ WY+ + ++LIK + G + + +
Sbjct: 936 RPPP---HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCVFE 989
Query: 1272 KDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMG------ELKF-FLGIQINQS 1324
+ + ++VDD++ S N + K ++ +++ ++ E+++ LG++I
Sbjct: 990 NSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGLEIKYQ 1049
Query: 1325 KEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP--TCTLSKEDTGTVVDQK--------- 1373
+ KY K ++ E +N P++P + G +DQ+
Sbjct: 1050 R-------GKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDY 1102
Query: 1374 -----LYRGMIGSLLYLTAS-RPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNL 1427
+ +IG Y+ R +L+ + A+ P + L + +++ T +
Sbjct: 1103 KMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDK 1162
Query: 1428 GLLYRKSLDY----KLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMST 1483
L++ KS KL+ DA Y G++ KS GN L +I S + + ST
Sbjct: 1163 QLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 1484 AEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCD--NTAAICLSKNPILHSRAKHIE 1541
EAE + + L + + +++ + + D +T +I +S N R +
Sbjct: 1222 TEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFG 1280
Query: 1542 IKHHFIRDYVQKGILDIQFIDIEHQWADIFTKPLSVERFDFI 1583
K +RD V L + +I+ + AD+ TKPL ++ F +
Sbjct: 1281 TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 90.9 bits (224), Expect = 3e-17
Identities = 73/279 (26%), Positives = 123/279 (43%), Gaps = 15/279 (5%)
Query: 686 HKRLGHANWRLISKISKLQLVKGLPN--------IDYHS-DALCGACQKGKIVKSSFKSK 736
H+ L HAN + I K + IDY D L G K + +K S
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 737 DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI--KSKDYACEVFS 794
++ P + LH D+FGPV+ Y + D+ +++ WV + + +D +VF+
Sbjct: 232 Q--NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 289
Query: 795 SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 854
+ I+++ + +L ++ D G E+ N F EK+GI +++ + +GV ER NR
Sbjct: 290 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNR 349
Query: 855 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQ 914
TL + RT + + L H W A+ S ++N + P +K+ + +IS
Sbjct: 350 TLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL-ASPKSKKSARQHAGLAGLDISTLLP 408
Query: 915 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY 953
FG I+N + K + G L S S Y +Y
Sbjct: 409 FG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 61.6 bits (148), Expect = 2e-08
Identities = 38/99 (38%), Positives = 50/99 (50%)
Query: 1086 EPKTVEEALSDDGWILAMQEELINFKGMMCGIWYPYPFRRTLLEQNGYSKTS*MNKEK*P 1145
EPK+V AL D GW AMQEEL I P P + +L KT +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1146 ETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYA 1184
K VA+G+ Q+EGI + ET++PV R IR +L+ A
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 60.1 bits (144), Expect = 5e-08
Identities = 29/82 (35%), Positives = 47/82 (56%)
Query: 1383 LYLTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGF 1442
+YLT +RP + F+V ++F S R + + AV ++ Y+KGT GL Y + D +L F
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1443 CDADYAGDRIERKSTSGNCQFL 1464
D+D+A R+S +G C +
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 59.7 bits (143), Expect = 6e-08
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 721 GACQKGKIVKSSFKSKDIV----STSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSR 776
G CQ+ I +S K+ + +P + ID GP+ + G Y LV+VD +
Sbjct: 648 GRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYLYVLVVVDGMTG 705
Query: 777 WTWVKFIKSKDYACEVFS-SFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILH 835
+TW+ K+ + V S + T I K + SD G F + F + ++ GI
Sbjct: 706 FTWLYPTKAPSTSATVKSLNVLTSIAIPKV-----IHSDQGAAFTSSTFAEWAKERGIHL 760
Query: 836 EFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLE 895
EFS+P PQ VERKN ++ + ++ W + + N Y P+L+
Sbjct: 761 EFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTK---WYDLLPVVQLALNNTY-SPVLK 816
Query: 896 KTTYELFKGRRPNISYFHQ 914
T ++L G N + +Q
Sbjct: 817 YTPHQLLFGIDSNTPFANQ 835
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 53.9 bits (128), Expect = 3e-06
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 739 VSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFS-SFC 797
V +P + +ID GP+ ++ G + LV+VD + + W+ K+ + V + +
Sbjct: 878 VKPLKPFDKFYIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNML 935
Query: 798 TQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQ 857
T I K L SD G F + F + ++ GI EFS+P PQ +G VERKN ++
Sbjct: 936 TSIAIPKVL-----HSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIK 990
Query: 858 EMARTMI 864
+ ++
Sbjct: 991 RLLTKLL 997
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 53.5 bits (127), Expect = 4e-06
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 32/297 (10%)
Query: 691 HANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVST-SRPLELLH 749
H W+ +SK K + K C CQK K K + I T + +
Sbjct: 922 HYYWKNMSKYIKEYVRK------------CQKCQKAKTTKHTKTPMTITETPEHAFDRVV 969
Query: 750 IDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD---YACEVFSSFCTQIQSEKEL 806
+D GP+ S G++Y + ++ D +++ I +K A +F SF + K
Sbjct: 970 VDTIGPL-PKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTF 1028
Query: 807 KILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHE 866
+D G E++N C+ I + S+ Q GVVER +RTL E R+ I
Sbjct: 1029 I-----TDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYIST 1083
Query: 867 NNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNI-SYFHQFGCTCYILNTK 925
+ W + C+ + + YEL GR N+ +F++ I N
Sbjct: 1084 DKTDWDVWLQYF-VYCFNTTQSMVH---NYCPYELVFGRTSNLPKHFNKLHSIEPIYNID 1139
Query: 926 DYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSE 982
DY K+ + + + Y+ K + + + + VK + E G K ++E
Sbjct: 1140 DYAKESKYRLE----VAYARARKLLEAHKEKNK-ENYDLKVKDIELEVGDKVLLRNE 1191
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 51.2 bits (121), Expect = 2e-05
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 743 RPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFS-SFCTQIQ 801
+P + ID GP+ ++ G + LV+VD + + W+ K+ + V + + T I
Sbjct: 884 KPFDKFFIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIA 941
Query: 802 SEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMAR 861
K + SD G F + F + + GI EFS+P PQ +G VERKN ++ +
Sbjct: 942 VPKV-----IHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLT 996
Query: 862 TMI 864
++
Sbjct: 997 KLL 999
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 47.8 bits (112), Expect = 2e-04
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 21/144 (14%)
Query: 720 CGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTW 779
C CQ+ + P + +HID GP+N Y LV+VD +++
Sbjct: 824 CNNCQENSKMPRVVPLNPWPVPEAPWKRIHIDFAGPLNGC------YLLVVVDAKTKYAE 877
Query: 780 VKFIKSK------DYACEVFSSFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGI 833
VK +S D E+FS I E I SD G + + F C+ HGI
Sbjct: 878 VKLTRSISAVTTIDLLEEIFS-----IHGYPETII----SDNGTQLTSHLFAQMCQSHGI 928
Query: 834 LHEFSSPRTPQQNGVVERKNRTLQ 857
H+ S+ P+ NG ER TL+
Sbjct: 929 EHKTSAVYYPRSNGAAERFVDTLK 952
>SR40_YEAST (P32583) Suppressor protein SRP40
Length = 406
Score = 47.8 bits (112), Expect = 2e-04
Identities = 32/96 (33%), Positives = 48/96 (49%), Gaps = 4/96 (4%)
Query: 970 DREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSPKVQ-N 1028
D E S +S S S++ ++DSE +SESD S + SS E+ SE+E K +
Sbjct: 72 DSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRAR 131
Query: 1029 ESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDS 1064
ES +ED ++ + +P+ SS E GS S
Sbjct: 132 ESDNEDAKETKKAKTEPE---SSSSSESSSSGSSSS 164
Score = 43.9 bits (102), Expect = 0.004
Identities = 28/106 (26%), Positives = 47/106 (43%)
Query: 929 KKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTT 988
K+ + K+ S S + +S + E S S +S+ S+S + ++
Sbjct: 19 KEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSS 78
Query: 989 DSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSPKVQNESASED 1034
S +S S SDSE +E +SS +S + S + +ES SED
Sbjct: 79 SSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESED 124
Score = 42.0 bits (97), Expect = 0.013
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 970 DREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSPKVQNE 1029
D S +S S+S++ + S D+S+SD SDS +E+E+ S+AE +P NE
Sbjct: 245 DSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAEETPASSNE 304
Query: 1030 S 1030
S
Sbjct: 305 S 305
Score = 40.8 bits (94), Expect = 0.030
Identities = 25/91 (27%), Positives = 43/91 (46%), Gaps = 3/91 (3%)
Query: 944 SERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSE 1003
SE R S+ + +E+ K EP S +S +S S+ ++ SE S S+ SDS
Sbjct: 122 SEDETKKRARESDNEDAKETKKAK---TEPESSSSSESSSSGSSSSSESESGSESDSDSS 178
Query: 1004 KYTEVESSPEAEYNSEAEPSPKVQNESASED 1034
+ S E++ S+++ S + +S D
Sbjct: 179 SSSSSSSDSESDSESDSQSSSSSSSSDSSSD 209
Score = 34.7 bits (78), Expect = 2.2
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 955 SETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEA 1014
S++Q S S + S+S++ ++ S +S+SD SDS ++ S ++
Sbjct: 193 SDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDS 252
Query: 1015 EYNSEAEPSPKVQNESASED 1034
+S++ ++S+ D
Sbjct: 253 SSSSDSSSDESTSSDSSDSD 272
Score = 33.1 bits (74), Expect = 6.3
Identities = 22/96 (22%), Positives = 45/96 (45%), Gaps = 1/96 (1%)
Query: 969 DDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSPKVQN 1028
D S + S S++ ++ S+ S+SD SDS+ +SS ++ +S+ E + +
Sbjct: 211 DSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSD-ESTSSDSS 269
Query: 1029 ESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDS 1064
+S S+ ++ ++ + S EE S +S
Sbjct: 270 DSDSDSDSGSSSELETKEATADESKAEETPASSNES 305
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.332 0.143 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,663,317
Number of Sequences: 164201
Number of extensions: 7095136
Number of successful extensions: 25055
Number of sequences better than 10.0: 238
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 23535
Number of HSP's gapped (non-prelim): 991
length of query: 1594
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1470
effective length of database: 39,613,130
effective search space: 58231301100
effective search space used: 58231301100
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 73 (32.7 bits)
Medicago: description of AC137996.10