BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137838.2 - phase: 0
(137 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RLPA_PASMU (Q9CJR6) RlpA-like protein precursor 32 0.31
PLAK_MOUSE (Q02257) Junction plakoglobin (Desmoplakin III) (Frag... 30 1.6
PLAK_HUMAN (P14923) Junction plakoglobin (Desmoplakin III) 30 1.6
PLAK_BOVIN (Q8SPJ1) Junction plakoglobin (Desmoplakin III) 30 1.6
IMA2_MOUSE (P52293) Importin alpha-2 subunit (Karyopherin alpha-... 30 1.6
ARM_MUSDO (Q02453) Armadillo segment polarity protein 30 2.0
ARM_DROME (P18824) Armadillo segment polarity protein 30 2.0
YG43_STRP8 (Q8P000) Hypothetical UPF0144 protein spyM18_1643 28 4.5
YG33_STRPY (P67284) Hypothetical UPF0144 protein SPy1633 28 4.5
YD76_STRP3 (P67285) Hypothetical UPF0144 protein SpyM3_1376/SPs0486 28 4.5
TRA_HAEIN (O05069) Mu-like prophage FluMu transposase A 28 4.5
GRPE_LISIN (Q92BN7) GrpE protein (HSP-70 cofactor) 28 4.5
GPMA_TROWT (Q83FQ7) 2,3-bisphosphoglycerate-dependent phosphogly... 28 4.5
GPMA_TROW8 (Q83HD5) 2,3-bisphosphoglycerate-dependent phosphogly... 28 4.5
TRME_CHLTE (Q8KAS1) tRNA modification GTPase trmE 28 5.9
PLE1_HUMAN (Q15149) Plectin 1 (PLTN) (PCN) (Hemidesmosomal prote... 28 5.9
MURG_SHEVI (Q9F1N0) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 28 5.9
TRUB_BARHE (Q6G5F5) tRNA pseudouridine synthase B (EC 4.2.1.70) ... 28 7.7
RA50_HALN1 (Q9HRW3) DNA double-strand break repair rad50 ATPase 28 7.7
PLAK_XENLA (P30998) Junction plakoglobin (Desmoplakin III) 28 7.7
>RLPA_PASMU (Q9CJR6) RlpA-like protein precursor
Length = 294
Score = 32.3 bits (72), Expect = 0.31
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 72 ATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTDCVQKP 114
A+ LA LAKN+E VN++++G L +H + V KP
Sbjct: 173 ASATLAKLAKNQEAVNMLLQGEDTVELTQHTEEKTVKAATTKP 215
>PLAK_MOUSE (Q02257) Junction plakoglobin (Desmoplakin III)
(Fragment)
Length = 621
Score = 30.0 bits (66), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 62 NEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAP 105
N +D A+ T L +L+ + E + I + G IPAL++ L +P
Sbjct: 71 NTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSP 114
>PLAK_HUMAN (P14923) Junction plakoglobin (Desmoplakin III)
Length = 743
Score = 30.0 bits (66), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 62 NEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAP 105
N +D A+ T L +L+ + E + I + G IPAL++ L +P
Sbjct: 194 NTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSP 237
>PLAK_BOVIN (Q8SPJ1) Junction plakoglobin (Desmoplakin III)
Length = 745
Score = 30.0 bits (66), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 62 NEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAP 105
N +D A+ T L +L+ + E + I + G IPAL++ L +P
Sbjct: 195 NTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSP 238
>IMA2_MOUSE (P52293) Importin alpha-2 subunit (Karyopherin alpha-2
subunit) (SRP1-alpha) (RAG cohort protein 1) (Pendulin)
(Pore targeting complex 58 kDa subunit) (PTAC58)
(Importin alpha P1)
Length = 529
Score = 30.0 bits (66), Expect = 1.6
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 29/128 (22%)
Query: 17 QKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTW---------NEADRA 67
+K K DE++ + R +SS P D+ + L E N + T W N +
Sbjct: 39 RKAKKDEQMLKRRNVSSFP---DDATSPLQENRNN----QGTVNWSVEDIVKGINSNNLE 91
Query: 68 AAKRATHALADLAKNEE--VVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGS 125
+ +AT A L E+ ++ I+ G IP + L TDC P+ FE S
Sbjct: 92 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDC--SPIQFE------S 140
Query: 126 AFALGLLA 133
A+AL +A
Sbjct: 141 AWALTNIA 148
Score = 27.7 bits (60), Expect = 7.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 75 ALADLAKN-EEVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAF 127
AL ++A E +V+GGAIPA I L +P Q + GSAF
Sbjct: 143 ALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 196
>ARM_MUSDO (Q02453) Armadillo segment polarity protein
Length = 813
Score = 29.6 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 62 NEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAP 105
N D + K A L +L+ + + + I + G IPAL+K L +P
Sbjct: 202 NSNDLESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP 245
>ARM_DROME (P18824) Armadillo segment polarity protein
Length = 843
Score = 29.6 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 62 NEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAP 105
N D + K A L +L+ + + + I + G IPAL+K L +P
Sbjct: 212 NSNDLESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP 255
>YG43_STRP8 (Q8P000) Hypothetical UPF0144 protein spyM18_1643
Length = 535
Score = 28.5 bits (62), Expect = 4.5
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 1/69 (1%)
Query: 11 LSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAK 70
+ ER+ Q KL+EE + + +A A+ R +L+E N++T E +A+R
Sbjct: 141 IDERQLQVEKLEEEKKAELEKVAAMTIAEAREVILMETENKLT-HEIATRIRDAERDIKD 199
Query: 71 RATHALADL 79
R DL
Sbjct: 200 RTVKTAKDL 208
>YG33_STRPY (P67284) Hypothetical UPF0144 protein SPy1633
Length = 535
Score = 28.5 bits (62), Expect = 4.5
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 1/69 (1%)
Query: 11 LSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAK 70
+ ER+ Q KL+EE + + +A A+ R +L+E N++T E +A+R
Sbjct: 141 IDERQLQVEKLEEEKKAELEKVAAMTIAEAREVILMETENKLT-HEIATRIRDAERDIKD 199
Query: 71 RATHALADL 79
R DL
Sbjct: 200 RTVKTAKDL 208
>YD76_STRP3 (P67285) Hypothetical UPF0144 protein SpyM3_1376/SPs0486
Length = 535
Score = 28.5 bits (62), Expect = 4.5
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 1/69 (1%)
Query: 11 LSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAK 70
+ ER+ Q KL+EE + + +A A+ R +L+E N++T E +A+R
Sbjct: 141 IDERQLQVEKLEEEKKAELEKVAAMTIAEAREVILMETENKLT-HEIATRIRDAERDIKD 199
Query: 71 RATHALADL 79
R DL
Sbjct: 200 RTVKTAKDL 208
>TRA_HAEIN (O05069) Mu-like prophage FluMu transposase A
Length = 687
Score = 28.5 bits (62), Expect = 4.5
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 3/94 (3%)
Query: 2 EFQRRQGHCLSERKGQKRKLDEEL---PEDRQISSAPPTADERAALLVEVANQVTVLEST 58
E +R+ +R+G+ L+ EL P + Q T E+ A+ ++ + L S
Sbjct: 32 EQAKRENWKSQKRQGRGGGLEYELASLPIEVQNELLLKTTPEQTAVALQKIEETRPLASN 91
Query: 59 FTWNEADRAAAKRATHALADLAKNEEVVNVIVEG 92
W D A+AK A L V N++ G
Sbjct: 92 EVWQLWDEASAKAQEQAKIKLGTMFAVANLVESG 125
>GRPE_LISIN (Q92BN7) GrpE protein (HSP-70 cofactor)
Length = 191
Score = 28.5 bits (62), Expect = 4.5
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 11 LSERKGQKRKLDEELPEDR-----------QISSAPPTADERAALLVEVANQVTVLESTF 59
+SE+K +K KL EE+ ++ + + T E A ++E+ N++ +E+ +
Sbjct: 1 MSEKKNKKEKLAEEIEQEELNSLDESVETVEEEATEETLTEEQAKILELENKLDEVENRY 60
Query: 60 TWNEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPAL 98
+AD K+ +AD +++ + + +PAL
Sbjct: 61 LRMQADFENVKK--RHIADRDASQKYRSQSLAQDLLPAL 97
>GPMA_TROWT (Q83FQ7) 2,3-bisphosphoglycerate-dependent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM)
(dPGM)
Length = 221
Score = 28.5 bits (62), Expect = 4.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 84 EVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLP 116
+VV V+ G ++ AL+KHL+ TD Q +P
Sbjct: 166 KVVLVVAHGNSLRALVKHLECISDTDVCQLNIP 198
>GPMA_TROW8 (Q83HD5) 2,3-bisphosphoglycerate-dependent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM)
(dPGM)
Length = 221
Score = 28.5 bits (62), Expect = 4.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 84 EVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLP 116
+VV V+ G ++ AL+KHL+ TD Q +P
Sbjct: 166 KVVLVVAHGNSLRALVKHLECISDTDVCQLNIP 198
>TRME_CHLTE (Q8KAS1) tRNA modification GTPase trmE
Length = 473
Score = 28.1 bits (61), Expect = 5.9
Identities = 26/84 (30%), Positives = 39/84 (45%), Gaps = 18/84 (21%)
Query: 20 KLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAA-AKRATHALAD 78
+LD+EL E R++ +A P AA + VAN++ DRAA A A+AD
Sbjct: 323 RLDDELTEIRELKAAHP-----AAKFLTVANKL------------DRAANADALIRAIAD 365
Query: 79 LAKNEEVVNVIVEGGAIPALIKHL 102
E + + G I L +H+
Sbjct: 366 GTGTEVIGISALNGDGIDTLKQHM 389
>PLE1_HUMAN (Q15149) Plectin 1 (PLTN) (PCN) (Hemidesmosomal protein 1)
(HD1)
Length = 4684
Score = 28.1 bits (61), Expect = 5.9
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 6 RQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVE-----VANQVTVLESTFT 60
R+ + + QKR + EEL + RQ S A A R A E + ++ V+
Sbjct: 1540 RREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAERSRLRIEEEIRVVRLQLE 1599
Query: 61 WNEADRAAAKRATHALADLAKNEE 84
E R A+ AL A+ E
Sbjct: 1600 ATERQRGGAEGELQALRARAEEAE 1623
>MURG_SHEVI (Q9F1N0)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase (EC 2.4.1.227)
(Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
transferase)
Length = 365
Score = 28.1 bits (61), Expect = 5.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 83 EEVVNVIVEGGAIPALIKHLQAPPVTDCVQK--PLPFEHEVEKGS 125
E+ + V+V GG++ A + + P VTD V K + H+V KG+
Sbjct: 183 EDALKVLVVGGSLGAKVFNDLMPGVTDAVSKTHSITVWHQVGKGN 227
>TRUB_BARHE (Q6G5F5) tRNA pseudouridine synthase B (EC 4.2.1.70)
(tRNA pseudouridine 55 synthase) (Psi55 synthase)
(Pseudouridylate synthase) (Uracil hydrolyase)
Length = 319
Score = 27.7 bits (60), Expect = 7.7
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 16 GQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAKRATHA 75
G++R D+ E SS PT +E ALL + + F +A K A +
Sbjct: 84 GEERSTDDLEGEITHTSSKRPTREEILALLPQYTGVILQTPPQF-------SAIKIAGNR 136
Query: 76 LADLAKNEEVVNV 88
DLA+ EVV +
Sbjct: 137 AYDLAREGEVVEI 149
>RA50_HALN1 (Q9HRW3) DNA double-strand break repair rad50 ATPase
Length = 883
Score = 27.7 bits (60), Expect = 7.7
Identities = 24/76 (31%), Positives = 33/76 (42%), Gaps = 1/76 (1%)
Query: 11 LSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAK 70
LSE + +KR LD E DR I +A D L +V ++ L +A AA+
Sbjct: 629 LSELRERKRTLDSEFDADR-IETARADKDRAEDYLEQVEPKLQALREDRDDLQAKIGAAE 687
Query: 71 RATHALADLAKNEEVV 86
A L L + E V
Sbjct: 688 NAIAELESLREEHERV 703
>PLAK_XENLA (P30998) Junction plakoglobin (Desmoplakin III)
Length = 738
Score = 27.7 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 24/42 (56%)
Query: 64 ADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAP 105
+D A+ T L +L+ + E + I + G IPAL++ L +P
Sbjct: 193 SDMDTARCTTSILHNLSHHREGLLSIFKSGGIPALVRMLSSP 234
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,192,968
Number of Sequences: 164201
Number of extensions: 538526
Number of successful extensions: 1759
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 26
length of query: 137
length of database: 59,974,054
effective HSP length: 98
effective length of query: 39
effective length of database: 43,882,356
effective search space: 1711411884
effective search space used: 1711411884
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC137838.2