BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137823.6 + phase: 0
(217 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YWBO_BACSU (P39598) Hypothetical protein ywbO 59 1e-08
TRPC_SULTO (Q972A1) Indole-3-glycerol phosphate synthase (EC 4.1... 30 3.3
HMG1_RAT (P63159) High mobility group protein 1 (HMG-1) (Amphote... 30 3.3
HMG1_MOUSE (P63158) High mobility group protein 1 (HMG-1) 30 3.3
HMG1_HUMAN (P09429) High mobility group protein 1 (HMG-1) 30 3.3
HMG1_CRIGR (P07156) High mobility group protein 1 (HMG-1) (Fragm... 30 3.3
HMG1_BOVIN (P10103) High mobility group protein 1 (HMG-1) 30 3.3
HM1X_HUMAN (Q9UGV6) High mobility group protein 1-like 10 (HMG-1... 30 3.3
MDH1_AQUAE (O67655) Malate dehydrogenase 1 (EC 1.1.1.37) 30 4.3
BIP2_ARATH (Q39043) Luminal binding protein 2 precursor (BiP2) (... 30 4.3
BIP1_ARATH (Q9LKR3) Luminal binding protein 1 precursor (BiP1) (... 30 4.3
YW51_SULSO (Q97TY2) Hypothetical UPF0282 protein SSO3251 30 5.6
THC1_SULSO (Q97YJ8) Thiamine biosynthesis protein thiC 1 30 5.6
STB4_YEAST (P50104) Probable transcriptional regulatory protein ... 30 5.6
HMG1_PIG (P12682) High mobility group protein 1 (HMG-1) 30 5.6
DSBA_PSEAE (P95460) Thiol:disulfide interchange protein dsbA pre... 30 5.6
ZY16_HUMAN (Q7Z3T8) Zinc finger FYVE domain-containing protein 1... 29 7.3
YCF2_OENPI (P31568) Protein ycf2 (Fragment) 29 7.3
VATG_DROME (Q9XZH6) Vacuolar ATP synthase subunit G (EC 3.6.3.14... 29 7.3
RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC ... 29 7.3
>YWBO_BACSU (P39598) Hypothetical protein ywbO
Length = 200
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/201 (22%), Positives = 92/201 (44%), Gaps = 14/201 (6%)
Query: 14 VRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRS 73
V I + SD VCP+CFVGK ++AI + E+ W P++L P +P ++
Sbjct: 3 VHIKVYSDYVCPFCFVGKAAFEEAIKGK----DVEVEWMPFELRP-SPSPQLDP-----V 52
Query: 74 KFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQGLDKQHDLVEELGL 133
S+ + + + +G+ + ++ + F + +K H+ +
Sbjct: 53 NDPSKQYMWQTSIQPMAEKLGVEINFPNVSPHPYTDLAFEGFHFAKEYNKGHEYNTRVFQ 112
Query: 134 GYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYS---RNITGVPY 190
+F +++ IGD + L + A +VG++GA ++V+ + ++ +IT VP
Sbjct: 113 AFFQEDQNIGDIDILTKLAEEVGLDGASFKSALETRTYQDVQRQALKHAYEEADITAVPT 172
Query: 191 YVINGSQKLSGGQPPEVFLRA 211
++I G + G +VF +A
Sbjct: 173 FII-GDTVIPGAAGKDVFEKA 192
>TRPC_SULTO (Q972A1) Indole-3-glycerol phosphate synthase (EC
4.1.1.48) (IGPS)
Length = 246
Score = 30.4 bits (67), Expect = 3.3
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 96 VYSLSGLTGNTMDSHRLIYF---SGQQGLDKQHDLVE---------ELGLGYFTQEKYIG 143
+Y LS +T+D + +I GL++ DL E +G+ T+EKY G
Sbjct: 30 IYLLSKFIKSTIDKNAIIAEFKRKSPSGLNENRDLEEYVKFMEENGAIGISVLTEEKYFG 89
Query: 144 DQEFLLEAAAKV 155
LE AAK+
Sbjct: 90 GSYSDLENAAKI 101
>HMG1_RAT (P63159) High mobility group protein 1 (HMG-1)
(Amphoterin) (Heparin-binding protein p30)
Length = 214
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (47%)
Query: 31 KKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMSE 88
K+ +K A K+KY +I + + PDA K+G+ K E + K D+ + E
Sbjct: 140 KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEE 197
>HMG1_MOUSE (P63158) High mobility group protein 1 (HMG-1)
Length = 214
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (47%)
Query: 31 KKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMSE 88
K+ +K A K+KY +I + + PDA K+G+ K E + K D+ + E
Sbjct: 140 KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEE 197
>HMG1_HUMAN (P09429) High mobility group protein 1 (HMG-1)
Length = 214
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (47%)
Query: 31 KKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMSE 88
K+ +K A K+KY +I + + PDA K+G+ K E + K D+ + E
Sbjct: 140 KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEE 197
>HMG1_CRIGR (P07156) High mobility group protein 1 (HMG-1)
(Fragment)
Length = 180
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (47%)
Query: 31 KKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMSE 88
K+ +K A K+KY +I + + PDA K+G+ K E + K D+ + E
Sbjct: 106 KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEE 163
>HMG1_BOVIN (P10103) High mobility group protein 1 (HMG-1)
Length = 214
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (47%)
Query: 31 KKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMSE 88
K+ +K A K+KY +I + + PDA K+G+ K E + K D+ + E
Sbjct: 140 KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEE 197
>HM1X_HUMAN (Q9UGV6) High mobility group protein 1-like 10
(HMG-1L10)
Length = 211
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (47%)
Query: 31 KKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMSE 88
K+ +K A K+KY +I + + PDA K+G+ K E + K D+ + E
Sbjct: 141 KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEE 198
>MDH1_AQUAE (O67655) Malate dehydrogenase 1 (EC 1.1.1.37)
Length = 335
Score = 30.0 bits (66), Expect = 4.3
Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 5/63 (7%)
Query: 140 KYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNITGVPYYVINGSQKL 199
+Y G Q F + K+G G EE +K P +EEE + + R++ V V L
Sbjct: 274 EYYGVQGFCVGVPVKLGSNGVEEIIKVP-----MIEEEREMWRRSVESVKKTVEVAEGIL 328
Query: 200 SGG 202
S G
Sbjct: 329 SAG 331
>BIP2_ARATH (Q39043) Luminal binding protein 2 precursor (BiP2)
(AtBP2)
Length = 668
Score = 30.0 bits (66), Expect = 4.3
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 7/66 (10%)
Query: 139 EKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNITGVPYYVINGSQK 198
+K GD++ +EAA K +E +E N N+ +E +E+LK + V +I +
Sbjct: 592 DKLEGDEKEKIEAATKEALEWLDE---NQNSEKEEYDEKLK----EVEAVCNPIITAVYQ 644
Query: 199 LSGGQP 204
SGG P
Sbjct: 645 RSGGAP 650
>BIP1_ARATH (Q9LKR3) Luminal binding protein 1 precursor (BiP1)
(AtBP1)
Length = 669
Score = 30.0 bits (66), Expect = 4.3
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 7/66 (10%)
Query: 139 EKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNITGVPYYVINGSQK 198
+K GD++ +EAA K +E +E N N+ +E +E+LK + V +I +
Sbjct: 592 DKLEGDEKEKIEAATKEALEWLDE---NQNSEKEEYDEKLK----EVEAVCNPIITAVYQ 644
Query: 199 LSGGQP 204
SGG P
Sbjct: 645 RSGGAP 650
>YW51_SULSO (Q97TY2) Hypothetical UPF0282 protein SSO3251
Length = 308
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 100 SGLTGNTMDSHRLIYFSGQQGLDKQHDLVEELGLGYFTQEKYIGDQEFLLEAAAK 154
+GL +D H L + Q L HD+ ++LG+ T +Y+ + +LEA K
Sbjct: 229 NGLETVIIDHHVLRDINYAQVLKPVHDIAKDLGVRVTTAAEYLNLEPLILEARRK 283
>THC1_SULSO (Q97YJ8) Thiamine biosynthesis protein thiC 1
Length = 433
Score = 29.6 bits (65), Expect = 5.6
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 123 KQHDLVEELG-------LGYFTQEKYIGDQEFLLEAAAKVGI---EGAEEFLKNPNN-GL 171
K++D V LG G E +G+ LLE A V EG + ++ P + L
Sbjct: 215 KEYDAVISLGDALRPGATGDAHDEFQVGE---LLETARLVKSALKEGVQVMVEGPGHVPL 271
Query: 172 KEVEEELKTYSRNITGVPYYVINGSQKLSGGQPPEVFLRAFQAATS 217
E+ ++K + GVPYYV+ G + G P + A AA S
Sbjct: 272 NEIAWDVKLMKKLTGGVPYYVL-GPLPIDVGAPYDHIASAIGAAIS 316
>STB4_YEAST (P50104) Probable transcriptional regulatory protein
STB4
Length = 949
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 136 FTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNIT 186
F Q K +GD + +E A E A+E +NP+N K V L T S N T
Sbjct: 844 FEQFKKVGDNDADVEVDAGEREENADERQENPHNNSKRV--PLATRSHNTT 892
>HMG1_PIG (P12682) High mobility group protein 1 (HMG-1)
Length = 214
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 31 KKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMSE 88
K +K A K+KY +I + + PDA K+G+ K E + K D+ + E
Sbjct: 140 KHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEE 197
>DSBA_PSEAE (P95460) Thiol:disulfide interchange protein dsbA
precursor
Length = 211
Score = 29.6 bits (65), Expect = 5.6
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 99 LSGLTGNTMDSHRLIYFSGQQGLDKQHDLVEELGLGYFTQEKYIGDQEFLLEAAAKVGIE 158
L L G + H ++ + + + +HD+ + + K + E + + A G++
Sbjct: 82 LPALFGGIWNVHGQMFLT-LESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVD 140
Query: 159 GAEEFLKNPNN-GLKEVEEELKTYSR--NITGVPYYVINGSQKL---SGGQPPE 206
E+FL N+ +K E+ K + +TGVP V+NG + S G P E
Sbjct: 141 -KEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEE 193
>ZY16_HUMAN (Q7Z3T8) Zinc finger FYVE domain-containing protein 16
(Endofin) (Endosome-associated FYVE domain protein)
Length = 1539
Score = 29.3 bits (64), Expect = 7.3
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 146 EFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKT-YSRNITGVPYYVINGSQKLSGG 202
E ++ A E + N+G+ E + T + R +TG + V NG+ K S G
Sbjct: 1275 EHVISIGASFSTEADSHLVCIQNDGIYETQANSATGHPRKVTGASFVVFNGALKTSSG 1332
>YCF2_OENPI (P31568) Protein ycf2 (Fragment)
Length = 721
Score = 29.3 bits (64), Expect = 7.3
Identities = 20/89 (22%), Positives = 42/89 (46%), Gaps = 2/89 (2%)
Query: 119 QGLDKQHDLVEELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEEL 178
+G +++ + EE G T+E+ G ++ +E +EG EE ++ ++ EEE+
Sbjct: 223 EGTEEEVEGTEEEVEG--TEEEVEGTEDEEVEGTEDEEVEGTEEEVEGTEEEVEGTEEEV 280
Query: 179 KTYSRNITGVPYYVINGSQKLSGGQPPEV 207
+ + G + G+++ G EV
Sbjct: 281 EGTEEEVEGTEDEEVEGTEEEVEGTEEEV 309
>VATG_DROME (Q9XZH6) Vacuolar ATP synthase subunit G (EC 3.6.3.14)
(V-ATPase G subunit) (Vacuolar proton pump G subunit)
(V-ATPase 13 kDa subunit)
Length = 117
Score = 29.3 bits (64), Expect = 7.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 33 NLDKAIASSKDKYNFEILWHPYQLSPDAPK 62
++D+AI + KD + EIL + Y +SP+ K
Sbjct: 83 DMDRAIQTRKDPFILEILQYVYNISPEVHK 112
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
chain) (RNA polymerase beta' subunit)
Length = 1405
Score = 29.3 bits (64), Expect = 7.3
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 108 DSHRLIYFSGQQGLDKQHDLVEELGLGYFTQEKYIGD-QEFLLEAAAKVGIEGAEEFLKN 166
D R++YF D + + + T+E+Y+ +EF E AK+G E +E LKN
Sbjct: 134 DIERVLYFESYVVTDGGMTSLNQRQI--LTEEQYLDSLEEFGDEFDAKMGAEAIQEILKN 191
Query: 167 PNNGLKE 173
N LKE
Sbjct: 192 MN--LKE 196
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,010,031
Number of Sequences: 164201
Number of extensions: 1104165
Number of successful extensions: 2420
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2403
Number of HSP's gapped (non-prelim): 30
length of query: 217
length of database: 59,974,054
effective HSP length: 106
effective length of query: 111
effective length of database: 42,568,748
effective search space: 4725131028
effective search space used: 4725131028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Medicago: description of AC137823.6