BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137822.17 - phase: 0
(418 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y528_SYNY3 (Q55518) Hypothetical protein sll0528 (EC 3.4.24.-) 34 0.80
YCX9_EUGGR (P05729) Hypothetical 46.2 kDa protein in 16S rRNA 5'... 33 1.0
RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen) 33 1.8
RS1_CHLTR (O84100) 30S ribosomal protein S1 32 2.3
YXE0_STRAW (Q827I4) Hypothetical UPF0317 protein SAV6940 32 3.0
RUVX_CHLCV (Q822T1) Putative Holliday junction resolvase (EC 3.1... 32 3.0
LON_HAEIN (P43864) ATP-dependent protease La (EC 3.4.21.53) 32 3.0
RBN_NEIMB (Q9K0R0) tRNA processing ribonuclease BN (EC 3.1.-.-) ... 32 4.0
RBN_NEIMA (Q9JVT9) tRNA processing ribonuclease BN (EC 3.1.-.-) ... 32 4.0
NIC1_SCHPO (O74869) High-affinity nickel transport protein nic1 32 4.0
AOX1_AERPE (Q9YDX6) Heme-copper oxidase subunit I+III (EC 1.9.3.-) 32 4.0
YQ04_PSEAE (Q03268) Hypothetical protein PA2604 31 5.2
NORM_VIBVU (Q8D9N8) Probable multidrug resistance protein norM (... 31 5.2
TLC2_CHLTR (O84502) ADP,ATP carrier protein 2 (ADP/ATP transloca... 31 6.7
NIFN_RHOCA (P19077) Nitrogenase iron-molybdenum cofactor biosynt... 31 6.7
NH71_CAEEL (Q9GTD4) Nuclear hormone receptor family member nhr-71 31 6.7
NAPA_PARPN (Q56350) Periplasmic nitrate reductase precursor (EC ... 31 6.7
CHRA_ALCEU (P17551) Chromate transport protein 31 6.7
T16C_HUMAN (Q9BYT9) Transmembrane protein 16C 30 8.8
>Y528_SYNY3 (Q55518) Hypothetical protein sll0528 (EC 3.4.24.-)
Length = 379
Score = 33.9 bits (76), Expect = 0.80
Identities = 47/222 (21%), Positives = 76/222 (34%), Gaps = 63/222 (28%)
Query: 161 YPFVESALPLAYGVLGVLLF------HEVGHFLAAFPKQVKLSIPFFIPHITLGSFGAIT 214
+P + P G++ LL HE+GH L A + ++ + ITL FG +
Sbjct: 49 FPQLSGGTPWILGLITALLLFASVVAHELGHSLVALAQGIE------VKSITLFLFGGLA 102
Query: 215 QFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSSNPDVAGDLVQVPSMLFQGSLL 274
+ +++AGP VL + VG Q+P + G +
Sbjct: 103 SLEKESNTPWQAFAVAIAGPAVSLVLFLGLTIVG-------------TQIP-LPVPGQAI 148
Query: 275 LGLISRATLGYAAVHAATVPIHPLVIAGWCGLTIQAFNMLPVGCLDGGR-------SVQG 327
+GL+ G L + FN++P LDGG + G
Sbjct: 149 IGLL-----------------------GMINLALALFNLIPGLPLDGGNVLKSIVWQITG 185
Query: 328 AFGKGATMV------FGLTTYTLLGLGVLG-GPLSLAWGFFV 362
KG + FG + LG+L P+ W +
Sbjct: 186 NQNKGILIASRVGQGFGWLAIAIGSLGILNILPIGSFWTILI 227
>YCX9_EUGGR (P05729) Hypothetical 46.2 kDa protein in 16S rRNA
5'region (ORF406)
Length = 406
Score = 33.5 bits (75), Expect = 1.0
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 1/69 (1%)
Query: 168 LPLAYGVLGVLLFHEVGHFLAAFPKQVKLSIPFFIPHITLGS-FGAITQFKSILPDRSTQ 226
+PL ++ + E+ + PK+ + + IPH +GS + T K IL T
Sbjct: 291 MPLPPNLVNEMSSEEIKEAILEVPKEAAKGLVYGIPHFLIGSVVNSFTGVKYILMRVGTV 350
Query: 227 VDISLAGPF 235
V ++AGPF
Sbjct: 351 VFFTIAGPF 359
>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)
Length = 570
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (54%)
Query: 11 PADVKKIKDKLFGYSTFWVTKEEPFGELGEGILFIGNL 48
P DVK+ KD L+ F T+EEP E+ G + G +
Sbjct: 22 PEDVKQFKDLLYAMHGFTATEEEPTSEVQPGAILKGTV 59
>RS1_CHLTR (O84100) 30S ribosomal protein S1
Length = 569
Score = 32.3 bits (72), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (54%)
Query: 11 PADVKKIKDKLFGYSTFWVTKEEPFGELGEGILFIGNL 48
P DVK+ KD L+ F T+EEP E+ G + G +
Sbjct: 22 PEDVKQFKDLLYAMYGFTATEEEPTSEVHPGAILKGTV 59
>YXE0_STRAW (Q827I4) Hypothetical UPF0317 protein SAV6940
Length = 274
Score = 32.0 bits (71), Expect = 3.0
Identities = 26/79 (32%), Positives = 36/79 (44%), Gaps = 8/79 (10%)
Query: 327 GAFGKGATMVFGLTTYTLLGLGVLGGPLSLAWGFFVIFSQRSPEKPC-LNDVTEVGTWRQ 385
G FG A + G T L+ L P A+ ++F QR+P KPC + DVT+ G+W
Sbjct: 32 GVFGPTAGVAAGHTQANLISL-----PADWAYDM-LLFCQRNP-KPCPVLDVTDAGSWTT 84
Query: 386 TFVGVAIFLAVLTLLPVWD 404
A L VW+
Sbjct: 85 PLAEGADLRTDLPRYRVWE 103
>RUVX_CHLCV (Q822T1) Putative Holliday junction resolvase (EC
3.1.-.-)
Length = 163
Score = 32.0 bits (71), Expect = 3.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 311 FNMLPVGCLDGGRSVQGAFGKGATMVFGLTTYTLLGLGVLGGPLSLAWGFFVIFSQRSPE 370
F LP+GC++ G +V+ A ++F + + VLG P+ + Q+ +
Sbjct: 32 FISLPIGCIEAGNTVEAT----AKILFNIIQERSVSCVVLGNPIPM---------QKGQK 78
Query: 371 KPCLNDVTEVGTWRQTFVGVAIFLAVLTLLPVWDE 405
++T++ + Q GV + L WDE
Sbjct: 79 SALQEEITKLSSLIQESCGVEVIL--------WDE 105
>LON_HAEIN (P43864) ATP-dependent protease La (EC 3.4.21.53)
Length = 803
Score = 32.0 bits (71), Expect = 3.0
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 41 GILFIGNLRGKREDIFSILQNRLVEA---TGDKYNLFMVEEPDSDSPDPRGGPRVSFGLL 97
G+ +RG R+ L +L++ G K LF+++E D + D RG P +
Sbjct: 384 GVRDEAEIRGHRKTYIGALPGKLIQKMAKVGVKNPLFLLDEIDKMASDMRGDPASAL--- 440
Query: 98 RKEVSEPEETTLW-------QYVVASLLFLLT 122
EV +PE+ T + Y ++ ++F+ T
Sbjct: 441 -LEVLDPEQNTTFNDHYLEVDYDLSDVMFVAT 471
>RBN_NEIMB (Q9K0R0) tRNA processing ribonuclease BN (EC 3.1.-.-)
(RNase BN)
Length = 406
Score = 31.6 bits (70), Expect = 4.0
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 233 GPFA-GAVLSFSMFAV--GLLLSSNPDVAGDLVQVPSMLFQGSLLLGLISRATLGYAAVH 289
GP + G +SF + +V L S P +G L ++ F LL GL +
Sbjct: 149 GPLSLGVGISFMVGSVQDAALASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPAR 208
Query: 290 AATVPIHPLVIAGWCGLTIQAFNMLPVGCLDGGRSVQGAFGKGATMVFGLTTYTLLGLGV 349
A V + +C T ++ +G DG RS+ GAF A + F L LL V
Sbjct: 209 QAFVGA---LATAFCLETARSLFTWYMGNFDGYRSIYGAF---AAVPFFLLWLNLLWTLV 262
Query: 350 LGG 352
LGG
Sbjct: 263 LGG 265
>RBN_NEIMA (Q9JVT9) tRNA processing ribonuclease BN (EC 3.1.-.-)
(RNase BN)
Length = 408
Score = 31.6 bits (70), Expect = 4.0
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 233 GPFA-GAVLSFSMFAV--GLLLSSNPDVAGDLVQVPSMLFQGSLLLGLISRATLGYAAVH 289
GP + G +SF + +V L S P +G L ++ F LL GL +
Sbjct: 149 GPLSLGVGISFMVGSVQDAALASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPAR 208
Query: 290 AATVPIHPLVIAGWCGLTIQAFNMLPVGCLDGGRSVQGAFGKGATMVFGLTTYTLLGLGV 349
A V + +C T ++ +G DG RS+ GAF A + F L LL V
Sbjct: 209 QAFVGA---LATAFCLETARSLFTWYMGNFDGYRSIYGAF---AAVPFFLLWLNLLWTLV 262
Query: 350 LGG 352
LGG
Sbjct: 263 LGG 265
>NIC1_SCHPO (O74869) High-affinity nickel transport protein nic1
Length = 405
Score = 31.6 bits (70), Expect = 4.0
Identities = 35/130 (26%), Positives = 55/130 (41%), Gaps = 21/130 (16%)
Query: 222 DRSTQVDI-------SLAGPFAGAVLSFSM-FAVGLLLSSNPDVA----------GDLVQ 263
D ST+V + +L G A+L F + F VG+ L D A G+
Sbjct: 217 DTSTEVSLLGIATLQALKGTSIWAILLFPIVFLVGMCLVDTTDGALMYYAYSYSSGETNP 276
Query: 264 VPSMLFQGSLL--LGLISRATLGYAAVHAATVPIHPLVIAGWCGLTIQAFNMLPV-GCLD 320
S L+ +L + +I+ T+G + + +HP+ W GL + N V GC+
Sbjct: 277 YFSRLYYSIILTFVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLSDNYEIVGGCIC 336
Query: 321 GGRSVQGAFG 330
G + G FG
Sbjct: 337 GAFVLAGLFG 346
>AOX1_AERPE (Q9YDX6) Heme-copper oxidase subunit I+III (EC 1.9.3.-)
Length = 815
Score = 31.6 bits (70), Expect = 4.0
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 112 YVVASLLFLLTIGTSVEVGIASQINRLPPELVKFLTDPNYTEAPDMEMLYPFVESALPLA 171
Y+V S+ FLL G+ + + ++ P+ FLT Y EA + L + A P A
Sbjct: 28 YLVTSIAFLLIAGS---LALLFRVQLAIPKS-NFLTGDAYYEAVTVHGLIMLLWFASPFA 83
Query: 172 YGVLGVLLFHEVGHFLAAFPKQVKLS 197
+G+ ++ ++G AFP+ LS
Sbjct: 84 FGLANYIVPLQIGARDLAFPRLNALS 109
>YQ04_PSEAE (Q03268) Hypothetical protein PA2604
Length = 222
Score = 31.2 bits (69), Expect = 5.2
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Query: 295 IHPLVIAGWCGLTIQAFNMLPVGCLDGGRSVQGAFGKGATMVFGLTTYTLL---GLGVLG 351
+ + G+ G T+ + +G +GG + AF A + FGL+ Y L + L
Sbjct: 78 VSTFALTGFMGYTLGPILNMYLGLPNGGSVITSAFAMTALVFFGLSAYVLTTRKDMSFLS 137
Query: 352 GPLSLAWGFFVI 363
G ++ GFFV+
Sbjct: 138 GFITA--GFFVL 147
>NORM_VIBVU (Q8D9N8) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 483
Score = 31.2 bits (69), Expect = 5.2
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 194 VKLSIPFFIPHITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSS 253
+KL+ P I + G + +++ + D++ A L +F +GLL++
Sbjct: 39 IKLATPVLIASVAQTGMGFVD---TVMAGGVSATDMAAVSVAASIWLPSILFGIGLLMAL 95
Query: 254 NPDVA-----GDLVQVPSMLFQGSLLLGLISRATLG 284
P VA G QVP + QG+++ LIS +G
Sbjct: 96 VPVVAQLNGAGKREQVPFEIQQGAVMALLISIPIIG 131
>TLC2_CHLTR (O84502) ADP,ATP carrier protein 2 (ADP/ATP translocase
2)
Length = 540
Score = 30.8 bits (68), Expect = 6.7
Identities = 21/62 (33%), Positives = 28/62 (44%), Gaps = 1/62 (1%)
Query: 244 MFAVGLLLSSNPDVAGDLVQVPSMLFQGSLLLGLISRATLGYAAVHAATVPIHPLVIAGW 303
+FA G + G LV +ML G+L G I A G A + + I PLV+ W
Sbjct: 347 IFAAGQTIRRWGWTIGALVPPLTMLITGALFFGAIY-AVKGDAMIFGGILGISPLVLTAW 405
Query: 304 CG 305
G
Sbjct: 406 LG 407
>NIFN_RHOCA (P19077) Nitrogenase iron-molybdenum cofactor
biosynthesis protein nifN
Length = 461
Score = 30.8 bits (68), Expect = 6.7
Identities = 21/51 (41%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
Query: 147 TDPNYTEAP-DMEMLYPFVESALPLAYGVLGVLLF---HEVGHFLAAFPKQ 193
T+P T AP M Y +E A+PL +G G F H V HF A P Q
Sbjct: 13 TNPLKTSAPLGAAMAYLGIEGAVPLFHGAQGCTAFGVVHLVRHFKEAVPLQ 63
>NH71_CAEEL (Q9GTD4) Nuclear hormone receptor family member nhr-71
Length = 579
Score = 30.8 bits (68), Expect = 6.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 5 GPE--KVDPADVKKIKDKLFGYSTFWVTKEEPFGEL 38
GP+ ++DP DV K+ +W+ K++P+GEL
Sbjct: 225 GPKLRRMDPLDVSKLSAVELTGLLYWIEKQQPYGEL 260
>NAPA_PARPN (Q56350) Periplasmic nitrate reductase precursor (EC
1.7.99.4)
Length = 831
Score = 30.8 bits (68), Expect = 6.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 23 GYSTFWVTKE--EPFGELGEGILFIGNLRGKREDIFSILQNRLVEATGDKYNLFMV 76
G T W +E +P+ E G G+ F GN GK I ++ E ++YN+++V
Sbjct: 666 GKETLWRYREGLDPYVEPGAGVQFYGNPDGKAR-IIAVPYEPPAEPPDEEYNIWLV 720
>CHRA_ALCEU (P17551) Chromate transport protein
Length = 401
Score = 30.8 bits (68), Expect = 6.7
Identities = 31/111 (27%), Positives = 50/111 (44%), Gaps = 10/111 (9%)
Query: 113 VVASLLFLLTIGTSVEVGIASQINRLPPELVKFLTDPNYTEAPDMEMLYPFVESALPLAY 172
+V L L T+G V +A ++R E +++TD +Y E + L P +A Y
Sbjct: 26 LVMYFLRLGTLGFGGPVALAGYMHRDLVEAKQWITDADYKEGLALAQLAPGPLAAQLAIY 85
Query: 173 GVLGVLLFHEVGHFLAAFPKQVKLSIPFFIPHITLG----SFGAITQFKSI 219
LG + + VG L V +P F+ + LG FG +T +S+
Sbjct: 86 --LGYVHYRIVGATLVG----VAFVLPSFLMVLALGWAYVRFGGLTWMQSV 130
>T16C_HUMAN (Q9BYT9) Transmembrane protein 16C
Length = 981
Score = 30.4 bits (67), Expect = 8.8
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 177 VLLFHEVGHFLAAFPKQVKLSIPFFIPHITLGSFGAITQFKSILPDRSTQVDISL 231
VL F F+AAFP L++ I I L ++ +TQ++ LP R+T + I L
Sbjct: 759 VLQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLPARATDIGIWL 813
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.143 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,152,455
Number of Sequences: 164201
Number of extensions: 2162216
Number of successful extensions: 4860
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4856
Number of HSP's gapped (non-prelim): 19
length of query: 418
length of database: 59,974,054
effective HSP length: 113
effective length of query: 305
effective length of database: 41,419,341
effective search space: 12632899005
effective search space used: 12632899005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC137822.17