BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137702.3 - phase: 2 /pseudo
(899 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m... 43 0.004
YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergeni... 42 0.006
DR24_ARATH (O23317) Probable disease resistance protein At4g1461... 39 0.062
DR19_ARATH (Q9C8T9) Putative disease resistance protein At1g63350 38 0.14
PIF1_YEAST (P07271) DNA repair and recombination protein PIF1, m... 37 0.18
DRL2_ARATH (P60839) Probable disease resistance protein At1g12290 37 0.31
RFC2_SCHPO (Q09843) Probable activator 1 subunit 2 (Replication ... 36 0.52
PRIA_BORBU (Q45032) Primosomal protein N' (Replication factor Y) 35 0.68
PRIA_BACSU (P94461) Primosomal protein N' (Replication factor Y) 35 0.89
FTSY_BUCAI (P57137) Cell division protein ftsY homolog 35 0.89
DR33_ARATH (Q9FG90) Probable disease resistance protein At5g43740 34 1.5
DR17_ARATH (O64790) Putative disease resistance protein At1g61300 34 1.5
TIG_MYCTU (O53189) Trigger factor (TF) 34 2.0
TIG_MYCBO (Q7TYJ1) Trigger factor (TF) 34 2.0
TBUD_BURPI (Q01551) Phenol 2-monooxygenase (EC 1.14.13.7) (Pheno... 34 2.0
RPS5_ARATH (O64973) Disease resistance protein RPS5 (Resistance ... 33 2.6
FTSY_BUCAP (Q8KA77) Cell division protein ftsY homolog 33 2.6
MTB2_BACAM (P18051) Modification methylase BamHII (EC 2.1.1.113)... 33 3.4
PRIA_CHLPN (Q9Z6Y2) Primosomal protein N' (Replication factor Y) 33 4.4
DR15_ARATH (Q940K0) Probable disease resistance protein At1g61180 33 4.4
>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1,
mitochondrial precursor
Length = 805
Score = 42.7 bits (99), Expect = 0.004
Identities = 35/134 (26%), Positives = 59/134 (43%), Gaps = 12/134 (8%)
Query: 734 MTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILR----ALSSAVRSRKEIVLTVA 789
++ EQK + + ++ + F G GTGK+ +LR L S R + + V A
Sbjct: 310 LSDEQKRILDMVVEQQHS-----IFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTA 364
Query: 790 SSGIAALLIPGGRTAHSRFGIPIIVDEIS--TCGIHPKSPLAKLVCKAKLIIWDEAPMMH 847
S+G+AA I GG T HS G+ + + + I + +++I DE M+
Sbjct: 365 STGLAACNI-GGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMVD 423
Query: 848 KHCFEALDRSLRDI 861
+ L+ R I
Sbjct: 424 AELMDKLEEVARVI 437
>YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergenic
region
Length = 723
Score = 42.4 bits (98), Expect = 0.006
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 734 MTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILRALSSAVRS--RKEIVLTVASS 791
+T EQ+ V I+ + + F G GTGK+ IL+ + + S KE + AS+
Sbjct: 232 LTMEQERVVNLIVKKRTN-----VFYTGSAGTGKSVILQTIIRQLSSLYGKESIAITAST 286
Query: 792 GIAALLIPGGRTAHSRFGIPI---IVDEISTCGIHPKSPLAKLVCKAKLIIWDEAPMMHK 848
G+AA+ I GG T H GI I +D++ I + L K++I DE M+
Sbjct: 287 GLAAVTI-GGSTLHKWSGIGIGNKTIDQL-VKKIQSQKDLLAAWRYTKVLIIDEISMVDG 344
Query: 849 HCFEALDRSLRDI 861
+ + L++ R I
Sbjct: 345 NLLDKLEQIARRI 357
>DR24_ARATH (O23317) Probable disease resistance protein At4g14610
(pCol1)
Length = 719
Score = 38.9 bits (89), Expect = 0.062
Identities = 32/124 (25%), Positives = 60/124 (47%), Gaps = 13/124 (10%)
Query: 658 DDMLHRQRRASQLKNYTLAEIDRLL------RSHGKSMKEDYPTMPRTDISLIHESRNRL 711
++ L R+ R SQ++ EI+RL +S GKS Y M + + +R
Sbjct: 54 EEFLGRRHRLSQVQ----VEIERLCFCGFCSKSFGKSYH--YGKMVSVMLKEVENLSSRG 107
Query: 712 IYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFIL 771
++D + + ++E + ST+ Q+ + E++ + + + I LYG GG GKT +L
Sbjct: 108 VFDVVTEENLVAQVEEMPIQSTVVG-QETMLERVWNTLMKDGFKIMGLYGMGGVGKTTLL 166
Query: 772 RALS 775
++
Sbjct: 167 TQIN 170
>DR19_ARATH (Q9C8T9) Putative disease resistance protein At1g63350
Length = 898
Score = 37.7 bits (86), Expect = 0.14
Identities = 32/129 (24%), Positives = 59/129 (44%), Gaps = 7/129 (5%)
Query: 651 KTWQNLSDDMLHRQRRASQLKNYTLAEIDRLLRSH--GKSMKEDYPTMPRTDISLIH-ES 707
K W N + + + R + L N AE+ RL KS+ Y + L E
Sbjct: 70 KVWLNRVETI---ESRVNDLLNARNAELQRLCLCGFCSKSLTTSYRYGKSVFLKLREVEK 126
Query: 708 RNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGK 767
R +++ ++ E+E ++L T+ Q+ + + + + ++ GI LYG GG GK
Sbjct: 127 LERRVFEVISDQASTSEVEEQQLQPTIVG-QETMLDNAWNHLMEDGVGIMGLYGMGGVGK 185
Query: 768 TFILRALSS 776
T +L +++
Sbjct: 186 TTLLTQINN 194
>PIF1_YEAST (P07271) DNA repair and recombination protein PIF1,
mitochondrial precursor
Length = 857
Score = 37.4 bits (85), Expect = 0.18
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 635 QLLVTNQFAQPEVVWSKT--WQNLSDDMLHRQRRASQLKNYTLAEIDRLLRSHGKSMKED 692
QL+ N F Q S++ ++N L ++ +L+N ++++ +R L ++ K+
Sbjct: 137 QLISENSFDQSSQKKSRSTGFKNPLRPALKKESSFDELQNNSISQ-ERSLEMINENEKKK 195
Query: 693 YPTMPRTDISLIHESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDN 752
+ + S L D+ + N K+ ++ EQ+++ ++ +N
Sbjct: 196 MQFGEKIAVLTQRPSFTELQNDQDDSNLNPHNGVKVKIPICLSKEQESII-----KLAEN 250
Query: 753 LPGIFFLYGYGGTGKTFILRALSSAVRS--RKEIVLTVASSGIAALLIPGGRTAHSRFGI 810
IF+ G GTGK+ +LR + ++ +E V AS+G+AA I GG T HS GI
Sbjct: 251 GHNIFYT-GSAGTGKSILLREMIKVLKGIYGRENVAVTASTGLAACNI-GGITIHSFAGI 308
>DRL2_ARATH (P60839) Probable disease resistance protein At1g12290
Length = 884
Score = 36.6 bits (83), Expect = 0.31
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 668 SQLKNYTLAEIDRL----LRSHGKSMKEDYPTMPRTDISLIHESRNRLIYDELNYNQQLL 723
+ L + E+ RL + S + DY ++++ + +++ I++E+ +
Sbjct: 86 NDLDSSRTVELQRLCCCGVGSRNLRLSYDYGRRVFLMLNIVEDLKSKGIFEEVAHPATRA 145
Query: 724 EIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILRALSSA---VRS 780
E + L T+ Q+ + EK + D+ I LYG GG GKT +L +++
Sbjct: 146 VGEERPLQPTIVG-QETILEKAWDHLMDDGTKIMGLYGMGGVGKTTLLTQINNRFCDTDD 204
Query: 781 RKEIVLTVASSG 792
EIV+ V SG
Sbjct: 205 GVEIVIWVVVSG 216
>RFC2_SCHPO (Q09843) Probable activator 1 subunit 2 (Replication
factor C subunit 2) (Replication factor C2)
Length = 340
Score = 35.8 bits (81), Expect = 0.52
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 708 RNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGK 767
RN+ E + +E+ K + +++++ V + + +NLP + F YG GTGK
Sbjct: 7 RNKKTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLF-YGSPGTGK 65
Query: 768 TFILRALSSAV---RSRKEIVLTVASSGIAALLIPGGRTAHSRFGIPIIVDEISTCGIHP 824
T + ALS + + K VL + +S + I R F + +++ +P
Sbjct: 66 TSTILALSRELFGPQLMKSRVLELNASDERGISII--REKVKSFAKTTVTNKVDG---YP 120
Query: 825 KSPLAKLVCKAKLIIWDEAPMMHKHCFEALDRSLRDILRV 864
P K+II DEA M + AL R++ R+
Sbjct: 121 CPPF-------KIIILDEADSMTQDAQAALRRTMESYARI 153
>PRIA_BORBU (Q45032) Primosomal protein N' (Replication factor Y)
Length = 660
Score = 35.4 bits (80), Expect = 0.68
Identities = 21/61 (34%), Positives = 35/61 (56%), Gaps = 4/61 (6%)
Query: 726 EHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILRALSSAVRSRKEIV 785
+HKK + + EQ+N+Y++II N +F+L+G G+GKT I L + ++ V
Sbjct: 127 DHKKCLE-LNNEQQNIYKEIIGSEKTN---VFYLFGIPGSGKTEIFIKLCEYYLALEQQV 182
Query: 786 L 786
L
Sbjct: 183 L 183
>PRIA_BACSU (P94461) Primosomal protein N' (Replication factor Y)
Length = 805
Score = 35.0 bits (79), Expect = 0.89
Identities = 29/121 (23%), Positives = 55/121 (44%), Gaps = 4/121 (3%)
Query: 695 TMPRTDISLIHESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLP 754
T T +LI + + Y+E+ + ++ K +T EQ+ +E I +D +
Sbjct: 229 TSSATIKTLIQKGLLKESYEEVYRDPYQDKMFKKTEPLPLTDEQRAAFEPIRETLDSDEH 288
Query: 755 GIFFLYGYGGTGKTFI-LRALSSAVRSRKEIVLTVASSGIAALLIPGGRTAHSRFGIPII 813
+F L+G G+GKT I L+++ + KE ++ V + ++ RFG +
Sbjct: 289 KVFLLHGVTGSGKTEIYLQSIEKVLAKGKEAIVLVPEISLTPQMV---NRFKGRFGSQVA 345
Query: 814 V 814
V
Sbjct: 346 V 346
>FTSY_BUCAI (P57137) Cell division protein ftsY homolog
Length = 378
Score = 35.0 bits (79), Expect = 0.89
Identities = 36/157 (22%), Positives = 65/157 (40%), Gaps = 12/157 (7%)
Query: 728 KKLMSTMTAEQKNVYEK--IISRVDDNLPGIFFLYGYGGTGKTFILRALSSAVRSRKEIV 785
+KL + + N+ +K I + + P + + G GTGKT + L+ + + +
Sbjct: 149 EKLYFLLKRKMFNILKKVEIPLEISSHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSI 208
Query: 786 LTVASSGIAALLIPGGRTAHSRFGIPIIVDEISTCGIHPKSPLAKLVCKAK-----LIIW 840
+ A+ A I +T IP+I G P + + V AK ++I
Sbjct: 209 MLAAADTFRAAGIEQLQTLGKLNNIPVIAQR---SGSDPAAVIFDAVKSAKSKKIDVLII 265
Query: 841 DEAPMMHK--HCFEALDRSLRDILRVQNNGRTASLLV 875
D A +H H E L + +R I ++ + LL+
Sbjct: 266 DTAGRLHNKLHLIEELKKIVRVIKKIDISAPHEKLLI 302
>DR33_ARATH (Q9FG90) Probable disease resistance protein At5g43740
Length = 862
Score = 34.3 bits (77), Expect = 1.5
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 720 QQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILRALSS--- 776
Q+++ KKL+ T K V S ++D + G LYG GG GKT +L +L++
Sbjct: 138 QEIIHKVEKKLIQTTVGLDKLVEMAWSSLMNDEI-GTLGLYGMGGVGKTTLLESLNNKFV 196
Query: 777 AVRSRKEIVLTVASS 791
+ S ++V+ V S
Sbjct: 197 ELESEFDVVIWVVVS 211
>DR17_ARATH (O64790) Putative disease resistance protein At1g61300
Length = 766
Score = 34.3 bits (77), Expect = 1.5
Identities = 24/83 (28%), Positives = 43/83 (50%), Gaps = 5/83 (6%)
Query: 717 NYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILRALS- 775
N N+ +E + T+ E+ + EK +R+ ++ GI L+G GG GKT + + +
Sbjct: 26 NINRNSFGVEERPTQPTIGQEE--MLEKAWNRLMEDRVGIMGLHGMGGVGKTTLFKKIHN 83
Query: 776 --SAVRSRKEIVLTVASSGIAAL 796
+ + SR +IV+ + S A L
Sbjct: 84 KFAKMSSRFDIVIWIVVSKGAKL 106
>TIG_MYCTU (O53189) Trigger factor (TF)
Length = 466
Score = 33.9 bits (76), Expect = 2.0
Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 4/90 (4%)
Query: 659 DMLHRQRRASQLKNYTLAEIDRLLRSHGKSMKEDYPTMPRTDISLIHESRNRLIYDELNY 718
D + + +RA Q + A ID LL + E Y + D S++H + + L +DE +
Sbjct: 268 DQVRQAKRAQQAEQIRNATIDALLEQVDVPLPESY-VQAQFD-SVLHSALSGLNHDEARF 325
Query: 719 NQQLLEIEHKKLMSTMTAEQKNVYEKIISR 748
N+ L +E + AE + EK + R
Sbjct: 326 NELL--VEQGSSRAAFDAEARTASEKDVKR 353
>TIG_MYCBO (Q7TYJ1) Trigger factor (TF)
Length = 466
Score = 33.9 bits (76), Expect = 2.0
Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 4/90 (4%)
Query: 659 DMLHRQRRASQLKNYTLAEIDRLLRSHGKSMKEDYPTMPRTDISLIHESRNRLIYDELNY 718
D + + +RA Q + A ID LL + E Y + D S++H + + L +DE +
Sbjct: 268 DQVRQAKRAQQAEQIRNATIDALLEQVDVPLPESY-VQAQFD-SVLHSALSGLNHDEARF 325
Query: 719 NQQLLEIEHKKLMSTMTAEQKNVYEKIISR 748
N+ L +E + AE + EK + R
Sbjct: 326 NELL--VEQGSSRAAFDAEARTASEKDVKR 353
>TBUD_BURPI (Q01551) Phenol 2-monooxygenase (EC 1.14.13.7) (Phenol
hydroxylase)
Length = 670
Score = 33.9 bits (76), Expect = 2.0
Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 5/90 (5%)
Query: 705 HESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGG 764
HE+ +L + L ++LLE++ + MS +T + Y+ ++ VD+N PG G
Sbjct: 176 HET-GQLRLERLGRPEELLELDEENSMSVVTNLKAAPYKFLMKDVDENFPGELSTSG--- 231
Query: 765 TGKTFILRALSSAVRSRKEIVLTVASSGIA 794
GKT + A SA+ + V G A
Sbjct: 232 -GKTTSISADESAIDAALHAVWDADDLGAA 260
>RPS5_ARATH (O64973) Disease resistance protein RPS5 (Resistance to
Pseudomonas syringae protein 5) (pNd3/pNd10)
Length = 889
Score = 33.5 bits (75), Expect = 2.6
Identities = 36/159 (22%), Positives = 72/159 (44%), Gaps = 25/159 (15%)
Query: 657 SDDMLHRQRRASQLKNYTLA------EIDRLLRSH-------------GKSMKEDYPTMP 697
+++ RQ+R SQ++ + + + + LLRS+ K +K Y
Sbjct: 59 TEEFTGRQQRLSQVQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGK 118
Query: 698 RTDISL--IHESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPG 755
R + L + ++ +D ++ +++ T+ Q+ + EK +R+ ++ G
Sbjct: 119 RVIMMLKEVESLSSQGFFDVVSEATPFADVDEIPFQPTIVG-QEIMLEKAWNRLMEDGSG 177
Query: 756 IFFLYGYGGTGKTFILRALS---SAVRSRKEIVLTVASS 791
I LYG GG GKT +L ++ S + R ++V+ V S
Sbjct: 178 ILGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVS 216
>FTSY_BUCAP (Q8KA77) Cell division protein ftsY homolog
Length = 351
Score = 33.5 bits (75), Expect = 2.6
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 748 RVDDNLPGIFFLYGYGGTGKTFILRALSSAVRSRKEIVLTVASSGIAALLIPGGRTAHSR 807
++ ++ P + + G GTGKT + L+ + + V+ A+ A I + R
Sbjct: 143 KISNHTPFVILVVGINGTGKTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKR 202
Query: 808 FGIPII-----VDEISTCGIHPKSPLAKLVCKAKLIIWDEAPMMHK--HCFEALDRSLRD 860
IP+I D S KS ++K K ++I D A +H H E L + +R
Sbjct: 203 NNIPVISQSSGSDPASVAFDAVKSAISK---KIDVLIIDTAGRLHNKLHLLEELKKMVRV 259
Query: 861 ILRV 864
I ++
Sbjct: 260 IKKL 263
>MTB2_BACAM (P18051) Modification methylase BamHII (EC 2.1.1.113)
(N-4 cytosine-specific methyltransferase BamHII)
(M.BamHII)
Length = 265
Score = 33.1 bits (74), Expect = 3.4
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 280 SHQGDKEGENFRQS*S------SLHPNQIDKIISAEIPDKNRDPKLYEIVASLMIHGPCG 333
+H+G + G +FRQ+ +LH I + S PDKNR Y+I + I
Sbjct: 57 THKGSETGSSFRQALYFKELGFNLHDTMIYEKDSISFPDKNRY---YQIFEYMFIFSKGK 113
Query: 334 PQNKSSPCILIKKCTKYFPKKFVDNTVIDSDGYPVYRRRDNGVFIKKKGESFVDNRWVVP 393
P K+ + +K Y KK + DG V + N +K+ G F N W +P
Sbjct: 114 P--KTINLLADRKNKWYNGKKHIKGHYRKMDGEKVRHHKQN--LLKEFGVRF--NIWRIP 167
>PRIA_CHLPN (Q9Z6Y2) Primosomal protein N' (Replication factor Y)
Length = 749
Score = 32.7 bits (73), Expect = 4.4
Identities = 25/74 (33%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
Query: 737 EQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFI-LRALSSAVRSRKEIVLTVASSGIAA 795
EQ++ +KI S + + L+G G+GKT I LRA S A++ K +L V A
Sbjct: 213 EQQSAIDKIFSSLKTSQFHTHLLFGITGSGKTEIYLRATSEALKQGKSTILLVPE---IA 269
Query: 796 LLIPGGRTAHSRFG 809
L + +RFG
Sbjct: 270 LTVQTVSLFKARFG 283
>DR15_ARATH (Q940K0) Probable disease resistance protein At1g61180
Length = 889
Score = 32.7 bits (73), Expect = 4.4
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 713 YDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILR 772
+DE++ E+E + T+ Q+++ EK +R+ ++ GI L+G GG GKT + +
Sbjct: 133 FDEVSQPPPRSEVEERPTQPTIG--QEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFK 190
Query: 773 AL 774
+
Sbjct: 191 KI 192
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.335 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,138,864
Number of Sequences: 164201
Number of extensions: 4206445
Number of successful extensions: 15237
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 15232
Number of HSP's gapped (non-prelim): 33
length of query: 899
length of database: 59,974,054
effective HSP length: 119
effective length of query: 780
effective length of database: 40,434,135
effective search space: 31538625300
effective search space used: 31538625300
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC137702.3