BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137702.2 + phase: 0
(257 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
P4H1_RAT (P54001) Prolyl 4-hydroxylase alpha-1 subunit precursor... 113 4e-25
P4H2_CAEEL (Q20065) Prolyl 4-hydroxylase alpha-2 subunit precurs... 112 1e-24
P4HA_CHICK (P16924) Prolyl 4-hydroxylase alpha subunit (EC 1.14.... 109 6e-24
P4H2_HUMAN (O15460) Prolyl 4-hydroxylase alpha-2 subunit precurs... 107 3e-23
P4H2_MOUSE (Q60716) Prolyl 4-hydroxylase alpha-2 subunit precurs... 106 5e-23
P4H1_MOUSE (Q60715) Prolyl 4-hydroxylase alpha-1 subunit precurs... 103 5e-22
P4H1_CAEEL (Q10576) Prolyl 4-hydroxylase alpha-1 subunit precurs... 101 2e-21
P4H1_HUMAN (P13674) Prolyl 4-hydroxylase alpha-1 subunit precurs... 100 3e-21
EGLX_MOUSE (Q8BG58) Putative HIF-prolyl hydroxylase PH-4 (EC 1.1... 54 4e-07
EGLX_HUMAN (Q9NXG6) Putative HIF-prolyl hydroxylase PH-4 (EC 1.1... 54 4e-07
AAT_RICCN (Q92JE7) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 37 0.047
AAT_RICPR (Q9ZE56) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 34 0.30
DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC) 34 0.40
ER1A_HUMAN (Q96HE7) ERO1-like protein alpha precursor (EC 1.8.4.... 32 1.5
SSU1_YEAST (P41930) Sulfite sensitivity protein SSU1 32 2.0
EXL2_MOUSE (Q9ES89) Exostosin-like 2 (EC 2.4.1.223) (Glucuronyl-... 32 2.0
RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC ... 31 3.4
KEM1_YEAST (P22147) Strand exchange protein 1 (KAR(-) enhancing ... 31 3.4
UVRC_OCEIH (Q8CXB4) UvrABC system protein C (UvrC protein) (Exci... 30 4.4
ATPF_SYNY3 (P27181) ATP synthase B chain (EC 3.6.3.14) (Subunit I) 30 4.4
>P4H1_RAT (P54001) Prolyl 4-hydroxylase alpha-1 subunit precursor
(EC 1.14.11.2) (4-PH alpha-1)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase
alpha-1 subunit)
Length = 534
Score = 113 bits (283), Expect = 4e-25
Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 28/199 (14%)
Query: 62 AEKKEQWTEILSWEPRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRT 121
A+++++W + PR +H+ +S E E + +LAKP L++++V D +TGK T ++ R
Sbjct: 326 AKQEDEWDK-----PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRV 380
Query: 122 SSGMFLKRGKDKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYFL----DE 177
S +L +D ++ I RI D T + V E LQV +YGVG +YEPH+D+ D
Sbjct: 381 SKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDA 440
Query: 178 FNTKNGGQRVATVLMYLSDVEEGGETVFPAAKANFSSVPWWNDLSECARKGLSLKPKMGD 237
F G R+AT L Y+SDV GG TVFP G S+ PK G
Sbjct: 441 FRELGTGNRIATWLFYMSDVSAGGATVFPEV-------------------GASVWPKKGT 481
Query: 238 ALLFWSMRPDATLDASSLH 256
A+ ++++ D S+ H
Sbjct: 482 AVFWYNLFASGEGDYSTRH 500
>P4H2_CAEEL (Q20065) Prolyl 4-hydroxylase alpha-2 subunit precursor
(EC 1.14.11.2) (4-PH alpha-2)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase
alpha-2 subunit)
Length = 539
Score = 112 bits (279), Expect = 1e-24
Identities = 69/191 (36%), Positives = 99/191 (51%), Gaps = 23/191 (12%)
Query: 70 EILSWEPRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRTSSGMFLKR 129
EIL ++P A ++ N + E E + LA P L +++V +SKTG+ + R S +LK
Sbjct: 319 EILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKG 378
Query: 130 GKDKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYFLDE----FNTKNGGQ 185
D +I + RRI DFT + E LQV +YG+G Y+PH+D+ E F T N G
Sbjct: 379 DLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGN 438
Query: 186 RVATVLMYLSDVEEGGETVFPAAKANFSSVPWWNDLSECARKGLSLKPKMGDALLFWSMR 245
R+ATVL Y+S E GG TVF N L G ++ P DAL ++++R
Sbjct: 439 RIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNLR 479
Query: 246 PDATLDASSLH 256
D D + H
Sbjct: 480 RDGEGDLRTRH 490
>P4HA_CHICK (P16924) Prolyl 4-hydroxylase alpha subunit (EC
1.14.11.2) (4-PH alpha)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha
subunit)
Length = 516
Score = 109 bits (273), Expect = 6e-24
Identities = 67/198 (33%), Positives = 101/198 (50%), Gaps = 28/198 (14%)
Query: 63 EKKEQWTEILSWEPRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRTS 122
+++++W + PR + + +S EE E + LAKP L++++V D +TGK T + R S
Sbjct: 309 KQEDEWDK-----PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVS 363
Query: 123 SGMFLKRGKDKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYFL----DEF 178
+L + ++ I RI D T + V E LQV +YGVG +YEPH+D+ D F
Sbjct: 364 KSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAF 423
Query: 179 NTKNGGQRVATVLMYLSDVEEGGETVFPAAKANFSSVPWWNDLSECARKGLSLKPKMGDA 238
G R+AT L Y+SDV GG TVFP G S+ PK G A
Sbjct: 424 KELGTGNRIATWLFYMSDVSAGGATVFPEV-------------------GASVWPKKGTA 464
Query: 239 LLFWSMRPDATLDASSLH 256
+ ++++ P D S+ H
Sbjct: 465 VFWYNLFPSGEGDYSTRH 482
>P4H2_HUMAN (O15460) Prolyl 4-hydroxylase alpha-2 subunit precursor
(EC 1.14.11.2) (4-PH alpha-2)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase
alpha-2 subunit) (UNQ290/PRO330)
Length = 535
Score = 107 bits (267), Expect = 3e-23
Identities = 62/156 (39%), Positives = 88/156 (55%), Gaps = 10/156 (6%)
Query: 74 WE-PRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRTSSGMFLKRGKD 132
W+ P Y++ +S EE E + +AKP LA+++V D KTG T + R S +L+ D
Sbjct: 333 WDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDD 392
Query: 133 KIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYF----LDEFNTKNGGQRVA 188
++ + RR+ T + V+ E LQV +YGVG +YEPH+D+ D F G RVA
Sbjct: 393 PVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVA 452
Query: 189 TVLMYLSDVEEGGETVFPAAKANF-----SSVPWWN 219
T L Y+SDVE GG TVFP A ++V W+N
Sbjct: 453 TFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYN 488
>P4H2_MOUSE (Q60716) Prolyl 4-hydroxylase alpha-2 subunit precursor
(EC 1.14.11.2) (4-PH alpha-2)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase
alpha-2 subunit)
Length = 537
Score = 106 bits (265), Expect = 5e-23
Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 10/156 (6%)
Query: 74 WE-PRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRTSSGMFLKRGKD 132
W+ P Y++ +S EE E + +AKP LA+++V D KTG T + R S +L+ D
Sbjct: 335 WDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDD 394
Query: 133 KIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYFL----DEFNTKNGGQRVA 188
++ + RR+ T + V+ E LQV +YG+G +YEPH+D+ D F G RVA
Sbjct: 395 PVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVA 454
Query: 189 TVLMYLSDVEEGGETVFPAAKANF-----SSVPWWN 219
T L Y+SDVE GG TVFP A ++V W+N
Sbjct: 455 TFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYN 490
>P4H1_MOUSE (Q60715) Prolyl 4-hydroxylase alpha-1 subunit precursor
(EC 1.14.11.2) (4-PH alpha-1)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase
alpha-1 subunit)
Length = 534
Score = 103 bits (256), Expect = 5e-22
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 62 AEKKEQWTEILSWEPRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRT 121
A+++++W + PR +H+ +S E E + +LAKP L ++++ + TG R
Sbjct: 326 AKQEDEWDK-----PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRI 380
Query: 122 SSGMFLKRGKDKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYFL----DE 177
S +L +D ++ I RI D T + V E LQV +YGVG +YEPH+D+ D
Sbjct: 381 SKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDA 440
Query: 178 FNTKNGGQRVATVLMYLSDVEEGGETVFPAAKANFSSVPWWNDLSECARKGLSLKPKMGD 237
F G R+AT L Y+SDV GG TVFP G S+ PK G
Sbjct: 441 FRELGTGNRIATWLFYMSDVSAGGATVFPEV-------------------GASVWPKKGT 481
Query: 238 ALLFWSMRPDATLDASSLH 256
A+ ++++ D S+ H
Sbjct: 482 AVFWYNLFASGEGDYSTRH 500
>P4H1_CAEEL (Q10576) Prolyl 4-hydroxylase alpha-1 subunit precursor
(EC 1.14.11.2) (4-PH alpha-1)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase
alpha-1 subunit)
Length = 559
Score = 101 bits (251), Expect = 2e-21
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 6/155 (3%)
Query: 70 EILSWEPRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRTSSGMFLKR 129
EI + P A ++ + +S +E + LAKP LA+++V DS TGK + R S +LK
Sbjct: 322 EIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKE 381
Query: 130 GKDKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYFLDE----FNTKNGGQ 185
+ +++ + +RI T + +E E LQ+ +YG+G Y+PH+D+ E F + G
Sbjct: 382 WEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGN 441
Query: 186 RVATVLMYLSDVEEGGETVFPAAKANFSSVPWWND 220
R+ATVL Y+S GG TVF AK+ +P ND
Sbjct: 442 RIATVLFYMSQPSHGGGTVFTEAKSTI--LPTKND 474
>P4H1_HUMAN (P13674) Prolyl 4-hydroxylase alpha-1 subunit precursor
(EC 1.14.11.2) (4-PH alpha-1)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase
alpha-1 subunit)
Length = 534
Score = 100 bits (250), Expect = 3e-21
Identities = 63/199 (31%), Positives = 98/199 (48%), Gaps = 28/199 (14%)
Query: 62 AEKKEQWTEILSWEPRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRT 121
A+++++W + PR +H+ +S E E + +LAKP L ++++ + TG R
Sbjct: 326 AKQEDEWDK-----PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRI 380
Query: 122 SSGMFLKRGKDKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHYDYFL----DE 177
S +L ++ ++ I RI D T + V E LQV +YGVG +YEPH+D+ D
Sbjct: 381 SKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDA 440
Query: 178 FNTKNGGQRVATVLMYLSDVEEGGETVFPAAKANFSSVPWWNDLSECARKGLSLKPKMGD 237
F G R+AT L Y+SDV GG TVFP G S+ PK G
Sbjct: 441 FKELGTGNRIATWLFYMSDVSAGGATVFPEV-------------------GASVWPKKGT 481
Query: 238 ALLFWSMRPDATLDASSLH 256
A+ ++++ D S+ H
Sbjct: 482 AVFWYNLFASGEGDYSTRH 500
>EGLX_MOUSE (Q8BG58) Putative HIF-prolyl hydroxylase PH-4 (EC
1.14.11.-) (Hypoxia-inducible factor prolyl
4-hydroxylase)
Length = 503
Score = 53.9 bits (128), Expect = 4e-07
Identities = 50/171 (29%), Positives = 72/171 (41%), Gaps = 32/171 (18%)
Query: 119 VRTSSGMFLKRGKDK--IIQNIERRIADFTFIP---VENGEGLQVLHYGVGEKYEPHYD- 172
VR S +L +G+ +++ I +R+ T + VE E LQV+ YG G Y H D
Sbjct: 273 VRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVDS 332
Query: 173 -------------YFLDEFNTKNGGQRVATVLMYLSDVEEGGETVFPAAKANF------- 212
+E R TVL YL++V GGETVFP A
Sbjct: 333 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLI 392
Query: 213 -SSVPWWNDLSECARKGLSLKPKMGDALLFWSMRPD-----ATLDASSLHG 257
V + C + L +KP+ G A+ +++ PD +D SLHG
Sbjct: 393 QDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHG 443
>EGLX_HUMAN (Q9NXG6) Putative HIF-prolyl hydroxylase PH-4 (EC
1.14.11.-) (Hypoxia-inducible factor prolyl
4-hydroxylase)
Length = 502
Score = 53.9 bits (128), Expect = 4e-07
Identities = 51/171 (29%), Positives = 72/171 (41%), Gaps = 32/171 (18%)
Query: 119 VRTSSGMFLKRGKDK--IIQNIERRIADFTFIP---VENGEGLQVLHYGVGEKYEPHYD- 172
VR S +L +G+ I++ I +R+ T + VE E LQV+ YG G Y H D
Sbjct: 272 VRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDS 331
Query: 173 -------------YFLDEFNTKNGGQRVATVLMYLSDVEEGGETVFPAAKANF------- 212
+E R TVL YL++V GGETVFP A
Sbjct: 332 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLI 391
Query: 213 -SSVPWWNDLSECARKGLSLKPKMGDALLFWSMRPD-----ATLDASSLHG 257
V + C + L +KP+ G A+ +++ PD +D SLHG
Sbjct: 392 QDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHG 442
>AAT_RICCN (Q92JE7) Aspartate aminotransferase (EC 2.6.1.1)
(Transaminase A) (ASPAT)
Length = 401
Score = 37.0 bits (84), Expect = 0.047
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 132 DKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKY--EPHYDYFLDEFNTKNGGQRVAT 189
D I + + I D F N EG+ +L + +K+ E + DY LDE GG++V
Sbjct: 47 DNIKEGAIKAIKD-GFTKYTNVEGMPLLKQAIKDKFKRENNIDYELDEIIVSTGGKQVIY 105
Query: 190 VLMYLSDVEEGGETVFPAAKANFSSVPWW 218
L +++ +++G E + PA P+W
Sbjct: 106 NL-FMASLDQGDEVIIPA--------PYW 125
>AAT_RICPR (Q9ZE56) Aspartate aminotransferase (EC 2.6.1.1)
(Transaminase A) (ASPAT)
Length = 399
Score = 34.3 bits (77), Expect = 0.30
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 11/74 (14%)
Query: 147 FIPVENGEGLQVLHYGVGEKY--EPHYDYFLDEFNTKNGGQRVATVLMYLSDVEEGGETV 204
F N +G+ +L + K+ E + DY LDE GG++V L +++ +++G E +
Sbjct: 61 FTKYTNVDGIPLLKQAIKNKFKRENNIDYELDEIIVSTGGKQVIYNL-FMASLDKGDEVI 119
Query: 205 FPAAKANFSSVPWW 218
P VP+W
Sbjct: 120 IP--------VPYW 125
>DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC)
Length = 4196
Score = 33.9 bits (76), Expect = 0.40
Identities = 40/143 (27%), Positives = 64/143 (43%), Gaps = 8/143 (5%)
Query: 5 KHTHPRSQVKKLSTLILLTLFMLTLVIIVLLALGILYLPNTTDD-SLITDRRKIYESLAE 63
K P + L+ L+ LF L L+L +++L + D+ +TD + + E
Sbjct: 1055 KKVEPFLNLNSLNLLLKSELFQLDQCYS--LSLYLIHLKSEVDEIGKVTDFKIFSVNNTE 1112
Query: 64 KKEQ-WTEILSWEPRAFVYHNFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRTS 122
K Q + + W F FL +E EHL+N + S VD T +TES + S
Sbjct: 1113 FKSQVYLYLREWINALFDRFTFLLGKESEHLLNELDDTHSSLSTVDF-TVNNTESLI-NS 1170
Query: 123 SGMFLKRGKDKIIQNIERRIADF 145
+F K G K+ N+E +I +
Sbjct: 1171 LKIFKKAGCYKL--NVEHKIITY 1191
>ER1A_HUMAN (Q96HE7) ERO1-like protein alpha precursor (EC 1.8.4.-)
(ERO1-Lalpha) (Oxidoreductin 1-lalpha) (Endoplasmic
oxidoreductin 1-like protein) (ERO1-L) (UNQ434/PRO865)
Length = 468
Score = 32.0 bits (71), Expect = 1.5
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 6/38 (15%)
Query: 216 PWWNDLSECARKGLSLKPKMGDALLFWSMRPDATLDAS 253
P+WND+S+C R+ ++KP D + PD AS
Sbjct: 86 PFWNDISQCGRRDCAVKPCQSDEV------PDGIKSAS 117
>SSU1_YEAST (P41930) Sulfite sensitivity protein SSU1
Length = 458
Score = 31.6 bits (70), Expect = 2.0
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Query: 154 EGLQVLHYGVGEKYEPHYDYFLDEF-NTKNG------GQRVATVLMYLSDVEEGGETVFP 206
+ LQ+LH V K + +YF D F N K+ + T++ +L + + T P
Sbjct: 60 QALQILHLIVYIKEKSFREYFNDFFRNMKHNLFWGTYPMGLVTIINFLGALSKANTTKSP 119
Query: 207 AAKAN---FSSVPWWNDLSEC 224
N F V WW DL+ C
Sbjct: 120 TNARNLMIFVYVLWWYDLAVC 140
>EXL2_MOUSE (Q9ES89) Exostosin-like 2 (EC 2.4.1.223)
(Glucuronyl-galactosyl-proteoglycan
4-alpha-N-acetylglucosaminyltransferase)
(Alpha-1,4-N-acetylhexosaminyltransferase EXTL2)
(Alpha-GalNAcT EXTL2) (EXT-related protein 2)
Length = 330
Score = 31.6 bits (70), Expect = 2.0
Identities = 27/102 (26%), Positives = 45/102 (43%), Gaps = 9/102 (8%)
Query: 25 FMLTLVIIVLLALGIL--YLPNTTDDSLITDRRKIYESLAEKKEQWTEILSWEPRAFVYH 82
F L +++++LL G L LPN +D ++T RR+I + +T I+ R +
Sbjct: 22 FSLVVILVLLLVAGALTNLLPNIKEDKMLTLRREIKSPSKSALDSFTLIMQTYNRTDLLL 81
Query: 83 NFLSKEECEHLINLAKPFLAKSSVVDSKTGKSTESRVRTSSG 124
L+ + A P L K VV + G+ + S G
Sbjct: 82 RLLNHYQ-------AVPSLHKVIVVWNNVGEKGPEELWNSLG 116
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
chain) (RNA polymerase beta' subunit)
Length = 1406
Score = 30.8 bits (68), Expect = 3.4
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 25/139 (17%)
Query: 113 KSTESRVRTSSGMFLKRGKDKIIQNIERRIADFTFIPVENG----EGLQVLHYGVGEKYE 168
KS SR+ G+ L D +++IER + +++ VE G E Q+L E+Y
Sbjct: 118 KSLPSRI----GLLL----DMPLRDIERVLYFESYVVVEGGMTSLERSQIL---TEEQYL 166
Query: 169 PHYDYFLDEFNTKNGGQRVATVLMYLSDVEEGGETVFPAAKANFSSVPWWNDLSECARKG 228
+ F DEF+ K G + + ++L L D+E ET+ + N ++ SE RK
Sbjct: 167 DALEEFGDEFDAKMGAEAIQSLLKNL-DLENECETL--REELNETN-------SETKRKK 216
Query: 229 LSLKPKMGDALLFWSMRPD 247
L+ + K+ +A + +P+
Sbjct: 217 LTKRIKLLEAFIQSGNKPE 235
>KEM1_YEAST (P22147) Strand exchange protein 1 (KAR(-) enhancing
mutation protein) (5'-3' exoribonuclease) (DNA strand
transfer protein beta) (STP-beta) (P175)
Length = 1528
Score = 30.8 bits (68), Expect = 3.4
Identities = 33/115 (28%), Positives = 52/115 (44%), Gaps = 14/115 (12%)
Query: 51 ITDRRKIYESLA-----EKKEQW------TEILSWEPRAFVYHNFLSKEECEHLINLAKP 99
IT+R+ IY S A EKK+Q T+ P L KE L+N K
Sbjct: 1234 ITNRQFIYHSKASKKALEKKKQSNNRNNNTKTAHKTPSKQQSEEKLRKERAHDLLNFIKK 1293
Query: 100 FLAK--SSVVDSKTGKSTESRVRTSSGMFLKRGKDKIIQNIERRIADFTFIPVEN 152
+ S VD+K+ S + + + + LKR K +N++ +A+F P++N
Sbjct: 1294 DTNEKNSESVDNKSMGSQKDS-KPAKKVLLKRPAQKSSENVQVDLANFEKAPLDN 1347
>UVRC_OCEIH (Q8CXB4) UvrABC system protein C (UvrC protein)
(Excinuclease ABC subunit C)
Length = 596
Score = 30.4 bits (67), Expect = 4.4
Identities = 17/66 (25%), Positives = 32/66 (47%), Gaps = 2/66 (3%)
Query: 112 GKSTESRVRTSSGMFLKRGKDKIIQNIERRIADFTFIPVENGEGLQVLHYGVGEKYEPHY 171
GKS + R R S + + D+ Q + + I DF ++ + +L + +KY+P Y
Sbjct: 32 GKSKKLRNRVRS--YFRGANDRKTQRLVQEIRDFEYMVTSSEIEALILEMNLIKKYDPRY 89
Query: 172 DYFLDE 177
+ L +
Sbjct: 90 NVMLKD 95
>ATPF_SYNY3 (P27181) ATP synthase B chain (EC 3.6.3.14) (Subunit I)
Length = 179
Score = 30.4 bits (67), Expect = 4.4
Identities = 27/120 (22%), Positives = 58/120 (47%), Gaps = 13/120 (10%)
Query: 31 IIVLLALGILYLPNTTDDSLITDRRKIYESLAE---KKEQWTEILSWEPRAFVYHNFLSK 87
+ +LL + I Y P T L R+KI +++ E ++ + +IL+ E + +K
Sbjct: 34 LAILLGIIIYYAPKTLGKILGDRRQKIADAIEEAETRQRKSAQILAEEEKKLAQ----AK 89
Query: 88 EECEHLINLAKPFLAKSSVVDSKTGKSTES---RVRTSSGMFLKRGKDKIIQNIERRIAD 144
E ++ A ++ V + TE+ R++ ++ L ++++I ++RRIA+
Sbjct: 90 AEAARIVQEAG---QRAEVAKQEIATQTEADLRRMQEAAAQDLGAEQERVIAELKRRIAE 146
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,252,703
Number of Sequences: 164201
Number of extensions: 1265777
Number of successful extensions: 3973
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3942
Number of HSP's gapped (non-prelim): 30
length of query: 257
length of database: 59,974,054
effective HSP length: 108
effective length of query: 149
effective length of database: 42,240,346
effective search space: 6293811554
effective search space used: 6293811554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC137702.2